Wall clock time and date at job start Tue Mar 31 2020 05:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48504 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47316 * 299.99968 * 3 2 1 6 6 H 1.48505 * 109.46743 * 60.00011 * 3 2 1 7 7 C 1.40126 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.46175 * 119.99348 * 0.02562 * 7 2 1 10 10 O 1.21741 * 120.00406 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99794 * 179.97438 * 9 7 2 12 12 C 1.39526 * 120.00175 * 185.27559 * 11 9 7 13 13 C 1.39030 * 120.08431 * 33.39888 * 12 11 9 14 14 C 1.38054 * 119.91966 * 179.70014 * 13 12 11 15 15 C 1.38330 * 120.08150 * 0.25598 * 14 13 12 16 16 S 1.76207 * 119.91624 * 180.02562 * 15 14 13 17 17 O 1.42100 * 106.40093 * 203.54064 * 16 15 14 18 18 O 1.42097 * 106.40002 * 336.45712 * 16 15 14 19 19 N 1.65596 * 107.21860 * 89.99512 * 16 15 14 20 20 C 1.47148 * 120.98612 * 269.71863 * 19 16 15 21 21 C 1.53706 * 108.16661 * 129.43172 * 20 19 16 22 22 O 1.42964 * 109.14520 * 52.54046 * 21 20 19 23 23 C 1.42967 * 114.16342 * 297.29134 * 22 21 20 24 24 C 1.47155 * 120.98094 * 90.00431 * 19 16 15 25 25 C 1.38332 * 120.17111 * 0.02562 * 15 14 13 26 26 C 1.38059 * 120.07830 * 0.02562 * 25 15 14 27 27 H 0.97002 * 120.00586 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99805 * 5.28080 * 11 9 7 29 29 H 1.07999 * 120.03671 * 359.97047 * 13 12 11 30 30 H 1.08001 * 119.96212 * 180.27719 * 14 13 12 31 31 H 1.08998 * 109.68003 * 249.21651 * 20 19 16 32 32 H 1.09008 * 109.67730 * 9.76427 * 20 19 16 33 33 H 1.09006 * 109.65746 * 292.57999 * 21 20 19 34 34 H 1.09000 * 109.49219 * 172.40239 * 21 20 19 35 35 H 1.09000 * 109.51201 * 302.65222 * 23 22 21 36 36 H 1.09004 * 109.54937 * 182.52985 * 23 22 21 37 37 H 1.09000 * 109.67809 * 350.23135 * 24 19 16 38 38 H 1.08996 * 109.68434 * 110.74794 * 24 19 16 39 39 H 1.07993 * 119.95977 * 179.97438 * 25 15 14 40 40 H 1.08004 * 120.03967 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8814 2.3964 1.2126 7 6 2.0071 -1.2135 0.0005 8 1 3.0870 -1.2133 0.0010 9 6 1.2762 -2.4794 0.0005 10 8 0.0588 -2.4794 -0.0004 11 7 1.9501 -3.6465 0.0005 12 6 1.2569 -4.8523 -0.1106 13 6 0.0955 -4.9210 -0.8716 14 6 -0.5843 -6.1173 -0.9843 15 6 -0.1140 -7.2456 -0.3368 16 16 -0.9847 -8.7704 -0.4841 17 8 -0.6347 -9.5440 0.6554 18 8 -2.3257 -8.4364 -0.8147 19 7 -0.3633 -9.5648 -1.7975 20 6 -0.9364 -9.3739 -3.1393 21 6 0.2109 -9.0463 -4.1083 22 8 1.2257 -10.0461 -3.9884 23 6 1.8351 -10.1096 -2.6967 24 6 0.7745 -10.4873 -1.6563 25 6 1.0380 -7.1799 0.4262 26 6 1.7226 -5.9869 0.5444 27 1 -0.4851 0.8400 -0.0004 28 1 2.9170 -3.6482 0.0779 29 1 -0.2721 -4.0405 -1.3776 30 1 -1.4841 -6.1725 -1.5790 31 1 -1.4395 -10.2872 -3.4568 32 1 -1.6490 -8.5492 -3.1201 33 1 0.6305 -8.0705 -3.8633 34 1 -0.1685 -9.0334 -5.1300 35 1 2.2605 -9.1377 -2.4467 36 1 2.6239 -10.8618 -2.7020 37 1 1.1955 -10.4003 -0.6546 38 1 0.4406 -11.5108 -1.8265 39 1 1.4019 -8.0628 0.9306 40 1 2.6222 -5.9364 1.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003227251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:44 Heat of formation + Delta-G solvation = -121.131366 kcal Electronic energy + Delta-G solvation = -27504.069708 eV Core-core repulsion = 23411.108386 eV Total energy + Delta-G solvation = -4092.961321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.47004 -39.39403 -37.25175 -37.17590 -35.80777 -35.01410 -33.77088 -32.66387 -31.64903 -30.66358 -29.46389 -27.28801 -26.50812 -24.47828 -22.92921 -22.52200 -21.64157 -20.11345 -19.10947 -18.13735 -17.83404 -17.42994 -16.63641 -16.38083 -16.01481 -15.68246 -15.57128 -15.28726 -14.96297 -14.49174 -14.39595 -14.15629 -14.06450 -13.36579 -13.14194 -12.91057 -12.86171 -12.56227 -12.36514 -12.27749 -12.20273 -12.01460 -11.81771 -11.66481 -11.45369 -11.26108 -11.03048 -10.93627 -10.79220 -10.74572 -10.44031 -10.37401 -9.78501 -9.11353 -9.06493 -8.74249 -7.99496 -7.56666 -6.52104 -5.01033 0.39882 1.22849 1.70948 2.85938 2.96299 3.04898 3.09284 3.56663 3.73075 3.82730 3.91653 4.23722 4.29500 4.33769 4.49909 4.54726 4.83319 4.91857 4.94640 5.07042 5.09870 5.15171 5.29604 5.32101 5.42999 5.50779 5.61992 5.66596 5.76249 5.81071 5.97265 6.22678 6.24361 6.32708 6.55412 6.76951 6.83864 7.07631 7.13747 7.47736 7.75013 7.93520 8.67297 8.93859 10.15230 10.37528 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.002782 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.716774 B =10062.376231 C =10387.732799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.536 3.464 10 O -0.554 6.554 11 N -0.695 5.695 12 C 0.252 3.748 13 C -0.151 4.151 14 C -0.002 4.002 15 C -0.725 4.725 16 S 2.697 3.303 17 O -0.963 6.963 18 O -0.960 6.960 19 N -1.004 6.004 20 C 0.088 3.912 21 C 0.046 3.954 22 O -0.379 6.379 23 C 0.046 3.954 24 C 0.089 3.911 25 C 0.001 3.999 26 C -0.198 4.198 27 H 0.274 0.726 28 H 0.398 0.602 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -17.341 -6.208 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.344 3.656 10 O -0.435 6.435 11 N -0.336 5.336 12 C 0.150 3.850 13 C -0.173 4.173 14 C -0.023 4.023 15 C -0.817 4.817 16 S 2.792 3.208 17 O -0.953 6.953 18 O -0.950 6.950 19 N -0.843 5.843 20 C -0.037 4.037 21 C -0.033 4.033 22 O -0.297 6.297 23 C -0.032 4.032 24 C -0.037 4.037 25 C -0.020 4.020 26 C -0.221 4.221 27 H 0.085 0.915 28 H 0.232 0.768 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.797 -17.507 -5.823 18.661 hybrid contribution 1.378 1.634 0.244 2.151 sum 4.175 -15.873 -5.579 17.335 Atomic orbital electron populations 1.69974 1.07232 1.28097 1.32880 1.25776 0.94767 1.00715 0.92461 0.86173 0.80392 0.80920 0.78542 1.18566 1.19840 1.19867 1.20899 0.93948 0.88764 1.53358 0.90715 1.18516 0.87600 0.81989 0.77545 1.90670 1.13556 1.85772 1.53528 1.44513 1.10139 1.04487 1.74434 1.18336 0.91796 0.86327 0.88588 1.21455 0.96739 0.98482 1.00628 1.20653 0.96629 0.91070 0.93905 1.30302 1.14191 1.19851 1.17312 1.01673 0.73540 0.73421 0.72189 1.93540 1.84627 1.69514 1.47658 1.93556 1.32955 1.84755 1.83755 1.57964 1.46016 1.57923 1.22352 1.22189 0.96252 1.03553 0.81752 1.23076 0.88433 0.91707 1.00035 1.87941 1.53256 1.57248 1.31255 1.22982 0.94612 1.02313 0.83312 1.22087 0.86808 0.93853 1.00947 1.20448 0.91197 0.97636 0.92685 1.20981 1.03768 0.93206 1.04143 0.91489 0.76827 0.83501 0.85062 0.90136 0.88118 0.92072 0.87682 0.92213 0.87761 0.88282 0.90199 0.85145 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.03 11.82 55.55 0.66 -20.38 16 2 C 0.08 2.19 5.50 -17.35 -0.10 2.09 16 3 Si 0.92 18.62 29.56 -169.99 -5.02 13.59 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.53 -13.80 9.54 -35.69 -0.34 -14.14 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.54 14.02 7.47 -13.08 -0.10 13.93 16 10 O -0.55 -16.49 12.70 5.15 0.07 -16.43 16 11 N -0.69 -14.41 5.32 -11.20 -0.06 -14.47 16 12 C 0.25 4.89 6.28 -83.77 -0.53 4.37 16 13 C -0.15 -3.02 8.65 -39.36 -0.34 -3.36 16 14 C 0.00 -0.03 9.51 -39.62 -0.38 -0.41 16 15 C -0.73 -11.08 5.98 -39.51 -0.24 -11.32 16 16 S 2.70 37.39 5.70 -107.50 -0.61 36.77 16 17 O -0.96 -14.97 16.08 -57.17 -0.92 -15.89 16 18 O -0.96 -15.66 16.07 -57.17 -0.92 -16.58 16 19 N -1.00 -10.65 3.34 -112.83 -0.38 -11.03 16 20 C 0.09 0.81 6.60 -3.32 -0.02 0.78 16 21 C 0.05 0.39 7.00 37.52 0.26 0.66 16 22 O -0.38 -3.73 10.74 -35.23 -0.38 -4.11 16 23 C 0.05 0.37 6.98 37.31 0.26 0.63 16 24 C 0.09 0.76 6.57 -3.53 -0.02 0.74 16 25 C 0.00 0.01 9.51 -39.61 -0.38 -0.37 16 26 C -0.20 -3.16 9.97 -39.35 -0.39 -3.56 16 27 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 28 H 0.40 6.86 8.80 -40.82 -0.36 6.50 16 29 H 0.15 3.33 6.41 -52.49 -0.34 2.99 16 30 H 0.13 1.98 7.61 -52.49 -0.40 1.58 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.90 7.24 -51.92 -0.38 0.52 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.78 7.25 -51.93 -0.38 0.41 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.13 1.56 7.61 -52.49 -0.40 1.16 16 40 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -35.36 350.17 -9.35 -44.71 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.75 Total: 8.50 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.30 Total: -9.96 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.22 Total: -45.88 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -2.15 Total: -53.01 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Atomic # 16 Polarization: 37.39 SS G_CDS: -0.61 Total: 36.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.36 -9.35 -44.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003227251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.426 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds