Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00403 * 2 1 4 4 H 1.48504 * 109.47422 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47007 * 299.99962 * 3 2 1 6 6 H 1.48499 * 109.47092 * 59.99922 * 3 2 1 7 7 C 1.37879 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99681 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46672 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00034 * 90.00183 * 10 9 7 12 12 O 1.21287 * 120.00666 * 175.26159 * 11 10 9 13 13 C 1.50701 * 119.99975 * 355.26584 * 11 10 9 14 14 O 1.45196 * 109.47347 * 180.02562 * 13 11 10 15 15 C 1.34674 * 117.00229 * 179.97438 * 14 13 11 16 16 O 1.21434 * 119.99708 * 0.02562 * 15 14 13 17 17 C 1.48051 * 120.00392 * 179.97438 * 15 14 13 18 18 C 1.39855 * 120.92348 * 359.72755 * 17 15 14 19 19 C 1.38149 * 118.99438 * 179.74961 * 18 17 15 20 20 N 1.31805 * 120.90014 * 0.53521 * 19 18 17 21 21 C 1.31811 * 122.06156 * 359.70754 * 20 19 18 22 22 C 1.38153 * 120.89924 * 0.03466 * 21 20 19 23 23 C 1.39926 * 120.00489 * 269.99858 * 10 9 7 24 24 C 1.38864 * 120.07324 * 111.84829 * 23 10 9 25 25 C 1.38112 * 119.92851 * 179.74891 * 24 23 10 26 26 C 1.38279 * 120.07197 * 0.53338 * 25 24 23 27 27 C 1.38282 * 120.13934 * 359.74686 * 26 25 24 28 28 C 1.38107 * 120.07289 * 359.97101 * 27 26 25 29 29 H 0.97005 * 119.99381 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47103 * 59.99809 * 9 7 2 31 31 H 1.08990 * 109.46882 * 299.99699 * 9 7 2 32 32 H 1.09003 * 109.47441 * 59.99511 * 13 11 10 33 33 H 1.09004 * 109.46885 * 300.00134 * 13 11 10 34 34 H 1.08005 * 120.50434 * 359.97438 * 18 17 15 35 35 H 1.08003 * 119.55369 * 180.24407 * 19 18 17 36 36 H 1.07997 * 119.55258 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.49733 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.03269 * 0.03437 * 24 23 10 39 39 H 1.08001 * 119.96322 * 180.28225 * 25 24 23 40 40 H 1.08001 * 119.93381 * 179.72090 * 26 25 24 41 41 H 1.08001 * 119.96265 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.03703 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6408 -4.1249 1.1677 12 8 3.3610 -5.1008 1.1696 13 6 2.2355 -3.4851 2.4706 14 8 2.8319 -4.2155 3.5747 15 6 2.5669 -3.7691 4.8173 16 8 1.8568 -2.7967 4.9745 17 6 3.1404 -4.4644 5.9918 18 6 3.9552 -5.5901 5.8335 19 6 4.4735 -6.2049 6.9568 20 7 4.2009 -5.7507 8.1637 21 6 3.4339 -4.6963 8.3577 22 6 2.8779 -4.0174 7.2907 23 6 2.6576 -4.1445 -1.2112 24 6 3.9832 -3.9786 -1.5902 25 6 4.4300 -4.5093 -2.7844 26 6 3.5564 -5.1957 -3.6076 27 6 2.2344 -5.3577 -3.2358 28 6 1.7826 -4.8345 -2.0402 29 1 -0.4849 0.8401 -0.0004 30 1 0.6245 -2.5570 -0.8897 31 1 0.6240 -2.5566 0.8902 32 1 1.1497 -3.5074 2.5641 33 1 2.5807 -2.4514 2.4906 34 1 4.1788 -5.9707 4.8478 35 1 5.1071 -7.0724 6.8448 36 1 3.2374 -4.3587 9.3646 37 1 2.2501 -3.1546 7.4572 38 1 4.6650 -3.4390 -0.9495 39 1 5.4620 -4.3844 -3.0776 40 1 3.9072 -5.6059 -4.5431 41 1 1.5546 -5.8948 -3.8807 42 1 0.7501 -4.9617 -1.7502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003234294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -43.590864 kcal Electronic energy + Delta-G solvation = -28219.021264 eV Core-core repulsion = 24129.811494 eV Total energy + Delta-G solvation = -4089.209770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91070 -40.10476 -39.52000 -37.99764 -36.31640 -35.17737 -33.05045 -32.76433 -31.54740 -30.59366 -30.27482 -28.19897 -27.14134 -25.18171 -23.71637 -23.29534 -22.41784 -22.03556 -21.19539 -19.22411 -18.50036 -17.23182 -16.99754 -16.82720 -16.42084 -16.16459 -16.01375 -15.87373 -15.61630 -15.01814 -14.96978 -14.43620 -14.29455 -14.05320 -13.96374 -13.82673 -13.22040 -13.09264 -12.71080 -12.52456 -12.36568 -12.19470 -11.94288 -11.68789 -11.38251 -11.12332 -10.92932 -10.85239 -10.82693 -10.58118 -10.30887 -10.21821 -9.94237 -9.86046 -9.48393 -9.41447 -8.73143 -8.67616 -8.58500 -7.82970 -6.30469 -4.39220 0.35305 0.81059 1.64288 1.75367 2.31405 2.46503 2.98815 3.16768 3.25714 3.28983 3.56179 3.62720 4.12019 4.14062 4.25315 4.39569 4.64133 4.69469 4.79784 4.97806 5.04314 5.23927 5.26160 5.28675 5.38920 5.40687 5.48401 5.51622 5.66914 5.74271 5.81940 5.89384 5.93789 6.29487 6.32785 6.34505 6.53330 6.72742 6.80307 6.83519 6.99737 7.13036 7.46194 7.58968 7.63053 7.65654 7.85932 7.94016 8.57358 8.72219 9.29694 10.76646 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.003443 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.979993 B = 8130.303147 C =10454.433227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.555 5.555 11 C 0.525 3.475 12 O -0.538 6.538 13 C 0.058 3.942 14 O -0.330 6.330 15 C 0.504 3.496 16 O -0.488 6.488 17 C -0.070 4.070 18 C -0.115 4.115 19 C 0.091 3.909 20 N -0.466 5.466 21 C 0.091 3.909 22 C -0.112 4.112 23 C 0.174 3.826 24 C -0.105 4.105 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.114 4.114 28 C -0.122 4.122 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.151 0.849 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 -10.022 6.165 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.116 3.884 10 N -0.284 5.284 11 C 0.313 3.687 12 O -0.415 6.415 13 C -0.018 4.018 14 O -0.245 6.245 15 C 0.347 3.653 16 O -0.375 6.375 17 C -0.079 4.079 18 C -0.134 4.134 19 C -0.066 4.066 20 N -0.176 5.176 21 C -0.066 4.066 22 C -0.132 4.132 23 C 0.083 3.917 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.132 4.132 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.579 -10.506 6.914 13.758 hybrid contribution -0.225 1.826 -0.919 2.056 sum 5.353 -8.680 5.994 11.829 Atomic orbital electron populations 1.69914 1.06045 1.27555 1.48873 1.24922 0.94881 0.99401 0.94271 0.86433 0.80137 0.83024 0.77919 1.19561 1.20660 1.20611 1.21437 0.93708 0.90123 1.53188 0.91784 1.19696 0.87181 0.82158 0.99386 1.45791 1.45594 1.34920 1.02137 1.19839 0.80573 0.83572 0.84721 1.90679 1.37407 1.26038 1.87422 1.22892 0.99848 0.96948 0.82140 1.86470 1.68127 1.55661 1.14252 1.21032 0.78644 0.82245 0.83421 1.90897 1.34694 1.25328 1.86625 1.19530 0.99788 0.96953 0.91656 1.22674 0.94624 0.93968 1.02183 1.22856 0.97592 0.99214 0.86932 1.67546 1.12155 1.11966 1.25930 1.22790 0.93246 0.91218 0.99311 1.22372 0.98827 1.00672 0.91291 1.17510 0.92645 0.94699 0.86807 1.21238 0.95429 0.99226 0.96590 1.20948 0.99475 0.98420 0.94357 1.21039 0.93824 1.00557 0.99699 1.20911 0.95846 1.00255 0.96217 1.21206 0.99915 0.97816 0.95217 0.92308 0.93705 0.93994 0.87738 0.86222 0.82640 0.81740 0.81713 0.83107 0.86205 0.86201 0.86416 0.86126 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.55 -13.77 9.16 -34.44 -0.32 -14.09 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.23 5.36 4.88 -5.19 -0.03 5.34 16 10 N -0.56 -11.55 2.50 -114.74 -0.29 -11.84 16 11 C 0.53 10.75 7.61 -10.99 -0.08 10.66 16 12 O -0.54 -11.87 16.27 -14.11 -0.23 -12.10 16 13 C 0.06 1.08 4.62 36.01 0.17 1.25 16 14 O -0.33 -5.70 9.11 -47.10 -0.43 -6.13 16 15 C 0.50 8.03 7.92 34.76 0.28 8.30 16 16 O -0.49 -8.89 16.24 -19.22 -0.31 -9.20 16 17 C -0.07 -0.89 5.91 -104.66 -0.62 -1.51 16 18 C -0.11 -1.26 9.71 -39.01 -0.38 -1.64 16 19 C 0.09 0.88 11.17 -17.60 -0.20 0.68 16 20 N -0.47 -4.96 10.33 -13.31 -0.14 -5.10 16 21 C 0.09 0.85 11.17 -17.59 -0.20 0.66 16 22 C -0.11 -1.20 9.68 -39.01 -0.38 -1.57 16 23 C 0.17 3.42 4.74 -83.69 -0.40 3.02 16 24 C -0.11 -1.93 9.56 -39.40 -0.38 -2.31 16 25 C -0.11 -1.72 10.04 -39.61 -0.40 -2.12 16 26 C -0.13 -1.85 10.04 -39.55 -0.40 -2.24 16 27 C -0.11 -1.66 10.04 -39.61 -0.40 -2.05 16 28 C -0.12 -2.11 9.69 -39.39 -0.38 -2.49 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.04 1.08 7.86 -51.93 -0.41 0.68 16 31 H 0.04 0.97 6.47 -51.93 -0.34 0.64 16 32 H 0.10 1.87 7.25 -51.93 -0.38 1.49 16 33 H 0.12 2.34 7.91 -51.93 -0.41 1.93 16 34 H 0.16 1.65 7.71 -52.48 -0.40 1.25 16 35 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.15 1.48 7.74 -52.49 -0.41 1.07 16 38 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -31.16 377.48 -9.03 -40.19 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.85 Total: 4.78 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -4.20 Total: 1.58 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.31 Total: -40.10 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.97 Total: -27.43 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.16 -9.03 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003234294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.401 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds