Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34705 * 116.99946 * 2 1 4 4 O 1.21471 * 120.00219 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00021 * 179.97438 * 3 2 1 6 6 C 1.39630 * 120.15212 * 180.02562 * 5 3 2 7 7 C 1.37938 * 119.84860 * 180.02562 * 6 5 3 8 8 C 1.38371 * 120.15327 * 0.02640 * 7 6 5 9 9 C 1.50697 * 119.85143 * 179.97438 * 8 7 6 10 10 O 1.45201 * 109.46944 * 89.99622 * 9 8 7 11 11 C 1.34804 * 116.99925 * 180.02562 * 10 9 8 12 12 O 1.21526 * 120.00158 * 359.97438 * 11 10 9 13 13 C 1.47288 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.39296 * 120.28603 * 354.83939 * 13 11 10 15 15 C 1.38205 * 120.08627 * 180.27692 * 14 13 11 16 16 C 1.38842 * 120.68093 * 359.73704 * 15 14 13 17 17 C 1.37598 * 120.58249 * 0.02562 * 16 15 14 18 18 C 1.40703 * 119.88779 * 0.02562 * 17 16 15 19 19 C 1.40861 * 120.33435 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00819 * 145.73608 * 19 18 17 21 21 C 1.40300 * 119.99625 * 325.73972 * 19 18 17 22 22 N 1.30615 * 120.00178 * 339.67941 * 21 19 18 23 23 Si 1.86801 * 120.00058 * 159.68932 * 21 19 18 24 24 H 1.48493 * 109.47173 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.46636 * 299.99423 * 23 21 19 26 26 H 1.48494 * 109.47212 * 59.99337 * 23 21 19 27 27 C 1.38373 * 120.29854 * 0.22738 * 8 7 6 28 28 C 1.37937 * 120.14961 * 359.49314 * 27 8 7 29 29 H 1.09008 * 109.46955 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47108 * 299.99735 * 1 2 3 31 31 H 1.08993 * 109.47585 * 59.99897 * 1 2 3 32 32 H 1.07995 * 120.07177 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.92697 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46912 * 330.00028 * 9 8 7 35 35 H 1.09000 * 109.47278 * 209.99540 * 9 8 7 36 36 H 1.08000 * 119.95653 * 0.02562 * 14 13 11 37 37 H 1.07997 * 119.65882 * 179.75950 * 15 14 13 38 38 H 1.07994 * 119.70815 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.05357 * 180.02562 * 17 16 15 40 40 H 0.97001 * 119.99911 * 355.29856 * 22 21 19 41 41 H 1.08000 * 119.92028 * 179.72578 * 27 8 7 42 42 H 1.08003 * 120.07935 * 180.25432 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.1760 2.5200 0.0011 7 6 5.5538 2.5849 0.0011 8 6 6.3044 1.4225 0.0000 9 6 7.8093 1.5013 -0.0006 10 8 8.2932 1.5258 1.3682 11 6 9.6278 1.5962 1.5444 12 8 10.3667 1.6355 0.5804 13 6 10.1906 1.6243 2.9052 14 6 9.3481 1.6867 4.0127 15 6 9.8808 1.7187 5.2876 16 6 11.2551 1.6837 5.4822 17 6 12.1128 1.6171 4.4083 18 6 11.5966 1.5844 3.0998 19 6 12.4661 1.5167 1.9935 20 1 12.1757 0.9658 1.1113 21 6 13.7095 2.1650 2.0380 22 7 13.9112 3.1332 2.8913 23 14 15.0767 1.6438 0.8767 24 1 16.2799 2.4787 1.1223 25 1 15.4082 0.2155 1.1120 26 1 14.6285 1.8232 -0.5276 27 6 5.6794 0.1879 -0.0058 28 6 4.3024 0.1085 0.0000 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.5913 3.4280 0.0015 33 1 6.0480 3.5452 0.0011 34 1 8.1253 2.4094 -0.5139 35 1 8.2185 0.6319 -0.5151 36 1 8.2773 1.7143 3.8748 37 1 9.2213 1.7710 6.1412 38 1 11.6544 1.7090 6.4853 39 1 13.1803 1.5898 4.5696 40 1 13.1817 3.4499 3.4467 41 1 6.2713 -0.7154 -0.0111 42 1 3.8158 -0.8557 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003303211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = -132.008412 kcal Electronic energy + Delta-G solvation = -27453.584203 eV Core-core repulsion = 23328.247610 eV Total energy + Delta-G solvation = -4125.336593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.119 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85386 -39.72462 -38.96176 -37.50495 -36.72889 -35.46889 -34.03205 -32.56108 -31.30475 -30.24601 -29.50852 -28.48326 -26.80748 -25.38728 -23.38597 -22.95112 -22.42922 -21.13064 -20.86363 -19.91445 -18.34445 -18.10042 -17.42415 -16.77621 -16.66177 -16.28128 -15.90459 -15.21053 -14.95536 -14.80175 -14.70931 -14.21533 -14.00085 -13.82496 -13.79808 -13.63202 -13.14337 -12.89926 -12.69909 -12.47621 -12.43502 -12.20349 -11.88249 -11.58049 -11.33312 -11.23930 -11.15666 -11.01661 -10.83587 -10.79737 -10.45340 -10.28325 -10.08370 -9.81545 -9.29089 -9.25062 -9.17509 -8.89362 -7.91228 -7.73262 -7.31708 -4.62873 0.34069 1.12440 2.03492 2.19473 2.34591 2.67319 3.12998 3.23150 3.27981 3.33342 3.71952 3.80998 3.94201 4.35525 4.49051 4.55245 4.67363 4.70767 4.75089 4.82720 5.02588 5.10019 5.15827 5.31248 5.43942 5.46771 5.58117 5.76682 5.86836 5.94776 5.97807 5.99036 6.11377 6.14693 6.32016 6.40635 6.55910 6.67445 6.86964 7.10007 7.24400 7.40915 7.41879 7.50570 7.66867 7.75735 7.99950 8.08275 8.55610 8.67777 8.93632 9.89296 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.002198 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.029531 B =12735.747847 C =13588.531787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.511 3.489 4 O -0.507 6.507 5 C -0.129 4.129 6 C -0.056 4.056 7 C -0.108 4.108 8 C -0.045 4.045 9 C 0.102 3.898 10 O -0.363 6.363 11 C 0.504 3.496 12 O -0.513 6.513 13 C -0.255 4.255 14 C -0.022 4.022 15 C -0.261 4.261 16 C -0.070 4.070 17 C -0.200 4.200 18 C 0.121 3.879 19 C -0.464 4.464 20 H 0.104 0.896 21 C 0.032 3.968 22 N -0.783 5.783 23 Si 1.071 2.929 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.272 1.272 27 C -0.110 4.110 28 C -0.064 4.064 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.300 0.700 41 H 0.136 0.864 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.441 -5.119 -5.451 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.396 6.396 5 C -0.130 4.130 6 C -0.074 4.074 7 C -0.126 4.126 8 C -0.045 4.045 9 C 0.027 3.973 10 O -0.282 6.282 11 C 0.355 3.645 12 O -0.404 6.404 13 C -0.258 4.258 14 C -0.041 4.041 15 C -0.280 4.280 16 C -0.089 4.089 17 C -0.219 4.219 18 C 0.117 3.883 19 C -0.490 4.490 20 H 0.122 0.878 21 C -0.191 4.191 22 N -0.406 5.406 23 Si 0.893 3.107 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.128 4.128 28 C -0.082 4.082 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.154 0.846 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.880 -4.479 -6.131 17.602 hybrid contribution -1.960 -0.165 0.456 2.019 sum -17.840 -4.644 -5.675 19.288 Atomic orbital electron populations 1.23297 0.75860 1.03855 1.02696 1.86546 1.23655 1.32641 1.84303 1.21255 0.89173 0.81420 0.72518 1.90833 1.66827 1.36038 1.45928 1.19105 0.88773 0.95229 1.09869 1.21237 0.94408 0.96729 0.95017 1.21107 0.93051 0.98777 0.99695 1.20009 0.94734 0.93552 0.96241 1.21620 0.88797 1.03377 0.83464 1.86660 1.26764 1.86078 1.28748 1.21359 0.78512 0.73699 0.90953 1.90748 1.59013 1.47939 1.42683 1.18652 0.93689 1.25736 0.87714 1.20911 0.97637 0.93225 0.92296 1.20338 0.94611 1.17393 0.95639 1.20813 0.93660 0.97126 0.97254 1.21200 0.98597 1.10057 0.92069 1.17461 0.89946 0.87935 0.92948 1.21198 0.99761 1.25865 1.02210 0.87781 1.27331 1.00380 0.93192 0.98225 1.70390 1.37906 1.17716 1.14543 0.83551 0.74480 0.77136 0.75516 1.19756 1.19787 1.19691 1.21140 0.94248 0.97769 0.99675 1.21431 0.93631 0.97934 0.95177 0.87870 0.91732 0.91791 0.84287 0.84512 0.90493 0.90484 0.87798 0.88551 0.88590 0.87293 0.88631 0.84628 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.46 9.82 -40.50 -0.40 -3.86 16 3 C 0.51 5.96 7.90 34.61 0.27 6.23 16 4 O -0.51 -6.98 16.14 -19.24 -0.31 -7.29 16 5 C -0.13 -1.45 5.87 -104.98 -0.62 -2.07 16 6 C -0.06 -0.63 9.60 -39.17 -0.38 -1.00 16 7 C -0.11 -1.26 9.68 -39.64 -0.38 -1.64 16 8 C -0.05 -0.57 5.53 -104.52 -0.58 -1.15 16 9 C 0.10 1.54 5.59 36.00 0.20 1.75 16 10 O -0.36 -7.01 9.47 -40.78 -0.39 -7.40 16 11 C 0.50 11.69 7.85 34.41 0.27 11.96 16 12 O -0.51 -12.92 13.38 -19.28 -0.26 -13.18 16 13 C -0.26 -6.22 5.92 -104.39 -0.62 -6.84 16 14 C -0.02 -0.49 9.60 -39.20 -0.38 -0.86 16 15 C -0.26 -5.45 10.03 -39.37 -0.39 -5.84 16 16 C -0.07 -1.50 10.01 -39.59 -0.40 -1.90 16 17 C -0.20 -4.83 7.90 -38.88 -0.31 -5.14 16 18 C 0.12 3.14 5.16 -106.54 -0.55 2.59 16 19 C -0.46 -12.27 7.62 -37.81 -0.29 -12.55 16 20 H 0.10 2.84 5.99 -52.49 -0.31 2.53 16 21 C 0.03 0.79 5.01 -17.29 -0.09 0.70 16 22 N -0.78 -20.20 12.60 55.57 0.70 -19.50 16 23 Si 1.07 21.49 29.98 -169.99 -5.10 16.39 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.11 -1.22 9.68 -39.64 -0.38 -1.61 16 28 C -0.06 -0.65 9.62 -39.17 -0.38 -1.03 16 29 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 33 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.10 2.05 7.61 -52.49 -0.40 1.65 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.65 6.99 -52.49 -0.37 2.29 16 40 H 0.30 7.93 6.62 -40.82 -0.27 7.65 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.14 1.14 7.61 -52.48 -0.40 0.74 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -30.39 371.11 -8.82 -39.21 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.75 Total: 7.12 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -3.92 Total: -17.08 kcal Atomic # 7 Polarization: -20.20 SS G_CDS: 0.70 Total: -19.50 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.35 Total: -31.73 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.10 Total: 16.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.39 -8.82 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003303211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.802 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds