Wall clock time and date at job start Tue Mar 31 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35944 * 117.00015 * 2 1 4 4 C 1.38183 * 120.00851 * 359.71510 * 3 2 1 5 5 C 1.39773 * 119.85782 * 179.79662 * 4 3 2 6 6 C 1.47333 * 120.06708 * 180.23308 * 5 4 3 7 7 N 1.29859 * 120.00192 * 180.25821 * 6 5 4 8 8 N 1.40096 * 120.00457 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99913 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00397 * 0.02562 * 9 8 7 11 11 C 1.47788 * 119.99521 * 180.02562 * 9 8 7 12 12 C 1.40058 * 120.55734 * 179.72660 * 11 9 8 13 13 C 1.38355 * 118.28185 * 179.73731 * 12 11 9 14 14 C 1.38354 * 119.30734 * 0.54004 * 13 12 11 15 15 N 1.31930 * 121.08611 * 359.72001 * 14 13 12 16 16 C 1.31693 * 121.88408 * 0.02562 * 15 14 13 17 17 C 1.39834 * 119.86480 * 0.48930 * 5 4 3 18 18 C 1.37766 * 120.01343 * 359.74066 * 17 5 4 19 19 C 1.38967 * 120.14829 * 0.03113 * 18 17 5 20 20 O 1.35693 * 119.93328 * 179.97438 * 19 18 17 21 21 C 1.34787 * 117.00362 * 354.37423 * 20 19 18 22 22 H 1.08004 * 119.99804 * 5.06862 * 21 20 19 23 23 C 1.38623 * 120.00509 * 185.06415 * 21 20 19 24 24 N 1.31581 * 119.99803 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00300 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47224 * 60.00103 * 25 23 21 27 27 H 1.48502 * 109.47154 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46947 * 299.99848 * 25 23 21 29 29 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47178 * 60.00235 * 1 2 3 31 31 H 1.08998 * 109.47061 * 300.00444 * 1 2 3 32 32 H 1.08004 * 120.07251 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.00341 * 0.25241 * 6 5 4 34 34 H 0.97000 * 119.99685 * 0.02562 * 8 7 6 35 35 H 1.07997 * 120.85951 * 359.97345 * 12 11 9 36 36 H 1.07994 * 120.34314 * 180.23425 * 13 12 11 37 37 H 1.08002 * 119.45773 * 179.74392 * 14 13 12 38 38 H 1.08002 * 119.71836 * 179.97438 * 16 15 14 39 39 H 1.08000 * 119.99571 * 179.72581 * 17 5 4 40 40 H 1.08010 * 119.92366 * 179.97438 * 18 17 5 41 41 H 0.96994 * 120.00332 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3703 -0.0060 5 6 1.9316 3.6140 -0.0016 6 6 1.1338 4.8527 -0.0028 7 7 1.7277 6.0075 -0.0038 8 7 0.9692 7.1854 -0.0054 9 6 1.5857 8.3838 -0.0060 10 8 2.8002 8.4429 -0.0056 11 6 0.7855 9.6263 -0.0071 12 6 1.4139 10.8780 -0.0020 13 6 0.6192 12.0105 -0.0089 14 6 -0.7574 11.8719 -0.0091 15 7 -1.3220 10.6795 -0.0085 16 6 -0.6090 9.5723 -0.0070 17 6 3.3283 3.6802 -0.0017 18 6 4.0732 2.5213 -0.0005 19 6 3.4396 1.2844 0.0000 20 8 4.1776 0.1457 0.0005 21 6 5.5133 0.2820 -0.1171 22 1 5.9571 1.2666 -0.1239 23 6 6.3176 -0.8415 -0.2293 24 7 5.7769 -2.0411 -0.2215 25 14 8.1688 -0.6526 -0.3917 26 1 8.7012 0.0517 0.8023 27 1 8.7961 -1.9946 -0.4960 28 1 8.4809 0.1352 -1.6112 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 0.2151 2.3153 -0.0102 33 1 0.0551 4.8003 -0.0028 34 1 0.0004 7.1383 -0.0054 35 1 2.4909 10.9571 0.0034 36 1 1.0687 12.9925 -0.0090 37 1 -1.3801 12.7543 -0.0103 38 1 -1.1077 8.6143 -0.0061 39 1 3.8234 4.6401 -0.0028 40 1 5.1520 2.5741 -0.0010 41 1 6.3395 -2.8272 -0.2996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003335206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:23 Heat of formation + Delta-G solvation = 19.057029 kcal Electronic energy + Delta-G solvation = -26946.789743 eV Core-core repulsion = 22794.870679 eV Total energy + Delta-G solvation = -4151.919064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.92944 -39.69630 -39.13695 -37.64596 -37.02620 -35.63903 -33.06351 -32.90686 -32.39047 -31.29036 -29.67420 -28.85473 -26.70947 -25.62383 -24.96845 -24.03384 -22.97797 -21.74239 -21.02329 -20.40384 -18.61187 -18.18541 -17.53356 -17.37594 -17.13988 -16.36279 -15.86001 -15.41108 -15.34781 -15.22110 -15.20813 -14.64535 -14.20975 -14.15151 -14.05552 -13.91444 -13.59093 -13.56625 -13.42849 -12.69958 -12.62129 -12.41149 -11.77607 -11.58084 -11.50097 -11.15881 -10.99570 -10.82507 -10.56643 -10.56100 -10.50614 -10.41795 -10.13861 -9.85533 -9.74187 -9.52362 -9.18490 -8.76080 -7.96670 -6.93606 -6.57114 -4.09384 0.13803 0.69848 1.28754 2.15686 2.34000 2.49562 2.95224 3.10006 3.13565 3.14373 3.45094 3.74955 3.87920 3.93914 4.18966 4.28600 4.39150 4.48359 4.49229 4.77163 4.87957 4.94114 4.99758 5.05208 5.08157 5.41596 5.50930 5.51546 5.55067 5.57168 5.79853 5.80739 5.91447 6.02215 6.14189 6.26370 6.48403 6.81112 6.93756 6.97656 7.14792 7.23573 7.31523 7.49084 7.52329 7.83429 8.08097 8.33333 8.86328 9.53949 10.58611 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.001994 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.780593 B =14041.391246 C =15727.919329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.146 4.146 6 C 0.154 3.846 7 N -0.264 5.264 8 N -0.581 5.581 9 C 0.578 3.422 10 O -0.500 6.500 11 C -0.180 4.180 12 C -0.014 4.014 13 C -0.177 4.177 14 C 0.120 3.880 15 N -0.487 5.487 16 C 0.133 3.867 17 C -0.039 4.039 18 C -0.226 4.226 19 C 0.151 3.849 20 O -0.149 6.149 21 C -0.390 4.390 22 H 0.098 0.902 23 C 0.041 3.959 24 N -0.847 5.847 25 Si 0.944 3.056 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.377 0.623 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 20.404 0.255 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.053 4.053 7 N -0.070 5.070 8 N -0.322 5.322 9 C 0.364 3.636 10 O -0.373 6.373 11 C -0.186 4.186 12 C -0.041 4.041 13 C -0.197 4.197 14 C -0.036 4.036 15 N -0.195 5.195 16 C -0.026 4.026 17 C -0.059 4.059 18 C -0.246 4.246 19 C 0.094 3.906 20 O -0.049 6.049 21 C -0.465 4.465 22 H 0.115 0.885 23 C -0.165 4.165 24 N -0.479 5.479 25 Si 0.768 3.232 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.192 1.192 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.215 0.785 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.160 20.287 0.257 24.183 hybrid contribution 0.072 0.045 -0.075 0.113 sum -13.088 20.332 0.182 24.181 Atomic orbital electron populations 1.22904 0.80321 1.03047 1.00272 1.86249 1.19446 1.26144 1.89776 1.17942 0.89319 0.84447 1.07667 1.20649 0.98387 0.90581 1.05847 1.17429 0.92486 0.88803 1.16342 1.24412 0.97032 0.90784 0.93090 1.75197 1.21814 0.91938 1.18047 1.46771 1.07708 1.04040 1.73680 1.17681 0.87516 0.81388 0.76984 1.90817 1.13260 1.86453 1.46744 1.20949 0.95172 0.94465 1.08035 1.21797 1.01846 0.90409 0.90012 1.22215 0.95077 0.99924 1.02463 1.23060 0.92981 0.95484 0.92085 1.67716 1.40612 0.98578 1.12628 1.22992 0.89581 0.97538 0.92452 1.20970 0.92340 0.97877 0.94727 1.20885 1.00868 0.90636 1.12236 1.18877 0.88289 0.87690 0.95754 1.84009 1.19711 1.25807 1.75374 1.21466 0.78384 0.95102 1.51577 0.88516 1.25390 1.00856 0.94163 0.96112 1.70063 1.36673 0.97771 1.43421 0.85721 0.79846 0.78124 0.79486 1.19227 1.20148 1.19225 0.89038 0.93502 0.93522 0.85907 0.87511 0.78454 0.83138 0.83684 0.81998 0.82561 0.85809 0.84448 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.21 10.28 -34.18 -0.35 -6.56 16 3 C 0.05 1.07 6.70 -39.12 -0.26 0.81 16 4 C -0.13 -2.23 8.77 -39.03 -0.34 -2.57 16 5 C -0.15 -2.47 5.87 -105.03 -0.62 -3.09 16 6 C 0.15 2.13 10.74 -14.69 -0.16 1.97 16 7 N -0.26 -4.09 10.15 32.14 0.33 -3.76 16 8 N -0.58 -7.12 6.22 30.52 0.19 -6.93 16 9 C 0.58 7.69 7.90 -12.36 -0.10 7.60 16 10 O -0.50 -8.75 16.76 5.29 0.09 -8.66 16 11 C -0.18 -1.76 5.89 -104.82 -0.62 -2.38 16 12 C -0.01 -0.12 9.72 -38.86 -0.38 -0.50 16 13 C -0.18 -1.05 10.10 -39.50 -0.40 -1.45 16 14 C 0.12 0.76 11.17 -17.47 -0.20 0.57 16 15 N -0.49 -4.15 10.35 -12.90 -0.13 -4.28 16 16 C 0.13 1.09 10.71 -17.12 -0.18 0.91 16 17 C -0.04 -0.73 9.57 -39.16 -0.37 -1.11 16 18 C -0.23 -4.85 9.14 -39.48 -0.36 -5.21 16 19 C 0.15 3.60 6.67 -38.83 -0.26 3.34 16 20 O -0.15 -4.18 9.53 -14.27 -0.14 -4.32 16 21 C -0.39 -10.58 9.48 30.87 0.29 -10.29 16 22 H 0.10 2.40 5.19 -52.48 -0.27 2.13 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 24 N -0.85 -24.21 13.67 55.48 0.76 -23.45 16 25 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.55 7.65 -51.93 -0.40 0.16 16 31 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 32 H 0.12 1.59 6.28 -52.48 -0.33 1.26 16 33 H 0.11 1.04 8.02 -52.49 -0.42 0.62 16 34 H 0.38 3.07 6.72 -182.60 -1.23 1.85 16 35 H 0.15 1.23 7.74 -52.49 -0.41 0.82 16 36 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.16 0.88 6.42 -52.49 -0.34 0.54 16 39 H 0.12 2.29 7.54 -52.49 -0.40 1.89 16 40 H 0.14 2.91 5.62 -52.48 -0.29 2.61 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -35.65 366.97 -6.69 -42.34 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.88 Total: 4.13 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -3.06 Total: -8.98 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 1.14 Total: -38.42 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.40 Total: -19.54 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.65 -6.69 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003335206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.394 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds