Wall clock time and date at job start Tue Mar 31 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48503 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47482 * 299.99566 * 3 2 1 6 6 H 1.48501 * 109.47478 * 59.99899 * 3 2 1 7 7 C 1.38765 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99763 * 180.02562 * 7 2 1 9 9 O 1.34880 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.34826 * 116.99860 * 180.02562 * 9 7 2 11 11 O 1.21588 * 119.99693 * 359.97438 * 10 9 7 12 12 C 1.47000 * 120.00383 * 180.02562 * 10 9 7 13 13 C 1.38098 * 126.81906 * 0.31107 * 12 10 9 14 14 N 1.34393 * 107.88756 * 180.11485 * 13 12 10 15 15 C 1.40064 * 125.14807 * 179.87688 * 14 13 12 16 16 C 1.38874 * 120.06570 * 359.69777 * 15 14 13 17 17 C 1.38117 * 119.92377 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07083 * 359.97438 * 17 16 15 19 19 C 1.38281 * 120.14296 * 0.02562 * 18 17 16 20 20 C 1.38108 * 120.06851 * 0.02562 * 19 18 17 21 21 N 1.39766 * 109.70706 * 359.60836 * 14 13 12 22 22 C 1.31598 * 109.09914 * 0.24843 * 21 14 13 23 23 C 1.47640 * 126.52667 * 179.97438 * 22 21 14 24 24 C 1.34895 * 125.27284 * 325.02412 * 23 22 21 25 25 C 1.37911 * 114.69523 * 180.02562 * 24 23 22 26 26 C 1.33658 * 115.07184 * 359.97438 * 25 24 23 27 27 S 1.75863 * 109.76590 * 359.74119 * 26 25 24 28 28 H 0.97002 * 119.99678 * 0.02562 * 1 2 3 29 29 H 1.08001 * 126.06475 * 359.97438 * 13 12 10 30 30 H 1.07992 * 120.03804 * 0.04188 * 16 15 14 31 31 H 1.07997 * 119.95828 * 180.25302 * 17 16 15 32 32 H 1.08004 * 119.92412 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.96880 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.03424 * 179.97438 * 20 19 18 35 35 H 1.07998 * 122.65606 * 0.02562 * 24 23 22 36 36 H 1.07989 * 122.46562 * 180.02562 * 25 24 23 37 37 H 1.07993 * 125.11384 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8897 2.3965 1.2125 7 6 2.0083 -1.2017 0.0005 8 1 3.0883 -1.2017 0.0010 9 8 1.3339 -2.3698 0.0005 10 6 2.0681 -3.5006 0.0016 11 8 3.2824 -3.4369 0.0021 12 6 1.4008 -4.8104 0.0011 13 6 0.0401 -5.0460 -0.0064 14 7 -0.1485 -6.3766 -0.0014 15 6 -1.3955 -7.0142 -0.0039 16 6 -2.5622 -6.2609 -0.0057 17 6 -3.7903 -6.8927 -0.0076 18 6 -3.8590 -8.2739 -0.0082 19 6 -2.6992 -9.0268 -0.0064 20 6 -1.4680 -8.4011 -0.0034 21 7 1.0882 -7.0279 0.0004 22 6 2.0486 -6.1282 0.0021 23 6 3.5010 -6.3934 0.0049 24 6 4.1041 -7.4209 0.6375 25 6 5.4753 -7.4600 0.4954 26 6 5.9962 -6.4772 -0.2456 27 16 4.7123 -5.4229 -0.8225 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7353 -4.2942 -0.0127 30 1 -2.5091 -5.1823 -0.0059 31 1 -4.6979 -6.3074 -0.0132 32 1 -4.8207 -8.7655 -0.0093 33 1 -2.7561 -10.1053 -0.0065 34 1 -0.5625 -8.9897 -0.0016 35 1 3.5565 -8.1549 1.2100 36 1 6.0834 -8.2287 0.9488 37 1 7.0470 -6.3518 -0.4610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003458959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:20 Heat of formation + Delta-G solvation = 72.300739 kcal Electronic energy + Delta-G solvation = -25364.443315 eV Core-core repulsion = 21587.178759 eV Total energy + Delta-G solvation = -3777.264556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32632 -39.14672 -38.54877 -37.31465 -35.16720 -33.59436 -32.21378 -31.41705 -30.61362 -29.80032 -28.10973 -25.59011 -24.47318 -23.73938 -22.70934 -21.73883 -20.71211 -19.78292 -18.58616 -18.12778 -17.71356 -16.91024 -16.53258 -16.10335 -15.45498 -15.20969 -14.99466 -14.60468 -14.35746 -14.29806 -14.26001 -13.75581 -13.49372 -13.03610 -12.85775 -12.62319 -12.38670 -12.20003 -11.98321 -11.81309 -11.64965 -11.38993 -11.28428 -10.82466 -10.57314 -10.46725 -10.41813 -10.03701 -9.86109 -9.21752 -9.19974 -9.08376 -8.62198 -8.47834 -7.85681 -7.70964 -6.47489 -4.10163 0.64023 1.06615 1.13802 1.83169 2.04165 2.33648 2.43652 2.57226 3.10661 3.17476 3.18144 3.24907 3.61944 3.89380 4.07549 4.28031 4.47601 4.68034 4.75226 4.84270 4.93869 5.10575 5.13045 5.17242 5.31955 5.39300 5.53378 5.68205 5.76160 5.78084 5.83899 6.05639 6.15173 6.26925 6.33518 6.34244 6.54476 6.61223 6.72428 6.86497 7.12014 7.37042 7.60312 7.90725 8.68622 9.02394 9.81616 10.70744 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.007538 B = 0.004523 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.516093 B = 6189.690522 C = 9789.810237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.371 4.371 8 H 0.100 0.900 9 O -0.209 6.209 10 C 0.468 3.532 11 O -0.538 6.538 12 C -0.223 4.223 13 C 0.111 3.889 14 N -0.319 5.319 15 C 0.164 3.836 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.134 4.134 19 C -0.098 4.098 20 C -0.121 4.121 21 N -0.279 5.279 22 C 0.201 3.799 23 C -0.137 4.137 24 C -0.114 4.114 25 C -0.149 4.149 26 C -0.255 4.255 27 S 0.272 5.728 28 H 0.269 0.731 29 H 0.198 0.802 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -15.451 -0.670 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.447 4.447 8 H 0.118 0.882 9 O -0.116 6.116 10 C 0.316 3.684 11 O -0.436 6.436 12 C -0.236 4.236 13 C -0.032 4.032 14 N -0.093 5.093 15 C 0.072 3.928 16 C -0.161 4.161 17 C -0.110 4.110 18 C -0.153 4.153 19 C -0.116 4.116 20 C -0.141 4.141 21 N -0.098 5.098 22 C 0.031 3.969 23 C -0.257 4.257 24 C -0.148 4.148 25 C -0.180 4.180 26 C -0.393 4.393 27 S 0.540 5.460 28 H 0.079 0.921 29 H 0.215 0.785 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.222 -15.151 -1.601 15.572 hybrid contribution 0.476 0.423 1.067 1.242 sum -2.746 -14.728 -0.534 14.991 Atomic orbital electron populations 1.69988 1.06033 1.27678 1.46374 1.25341 0.95843 0.98861 0.96294 0.85606 0.79581 0.79958 0.78115 1.18799 1.20172 1.20189 1.21345 0.92626 0.79530 1.51188 0.88242 1.83912 1.39072 1.13120 1.75458 1.19546 0.85594 0.83986 0.79275 1.90595 1.14248 1.86797 1.51961 1.20748 0.91298 0.92186 1.19332 1.23242 0.98137 0.85381 0.96409 1.45270 1.04147 1.04219 1.55656 1.17630 0.81179 0.92427 1.01597 1.20995 0.90767 1.00702 1.03622 1.20989 0.96865 0.94696 0.98416 1.21219 0.98600 0.94023 1.01472 1.21042 0.91544 1.00169 0.98892 1.20922 0.99315 0.92047 1.01845 1.77398 0.87315 1.19047 1.26024 1.20777 0.90830 0.89135 0.96120 1.21731 0.92393 1.02324 1.09295 1.20177 0.94216 0.98455 1.01965 1.19814 0.94255 1.00672 1.03243 1.26321 1.04580 1.00817 1.07533 1.85141 0.92913 1.22188 1.45772 0.92087 0.78494 0.84563 0.84890 0.85561 0.85227 0.84444 0.84678 0.84980 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.39 13.67 55.48 0.76 -23.63 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.37 -10.62 9.65 30.93 0.30 -10.32 16 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 9 O -0.21 -5.83 9.58 -21.97 -0.21 -6.04 16 10 C 0.47 11.76 7.88 34.28 0.27 12.03 16 11 O -0.54 -13.83 12.22 -19.33 -0.24 -14.06 16 12 C -0.22 -4.77 6.32 -102.92 -0.65 -5.42 16 13 C 0.11 2.03 10.60 -16.48 -0.17 1.86 16 14 N -0.32 -5.41 3.74 -10.24 -0.04 -5.45 16 15 C 0.16 2.31 6.67 -83.63 -0.56 1.76 16 16 C -0.14 -1.68 9.43 -39.39 -0.37 -2.06 16 17 C -0.09 -0.87 10.04 -39.61 -0.40 -1.27 16 18 C -0.13 -1.18 10.04 -39.55 -0.40 -1.57 16 19 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 20 C -0.12 -1.49 9.64 -39.40 -0.38 -1.87 16 21 N -0.28 -5.08 11.73 34.51 0.40 -4.67 16 22 C 0.20 3.96 7.24 -80.65 -0.58 3.37 16 23 C -0.14 -2.52 6.10 -36.93 -0.23 -2.75 16 24 C -0.11 -1.79 10.10 -40.89 -0.41 -2.21 16 25 C -0.15 -2.06 10.16 -41.31 -0.42 -2.48 16 26 C -0.25 -3.60 11.23 29.13 0.33 -3.27 16 27 S 0.27 4.81 19.82 -107.50 -2.13 2.68 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.20 3.25 6.92 -52.49 -0.36 2.88 16 30 H 0.14 1.55 6.64 -52.49 -0.35 1.20 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 1.71 7.65 -52.49 -0.40 1.31 16 35 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -32.75 346.99 -8.56 -41.31 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.15 Total: 3.40 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -4.17 Total: -14.52 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 1.13 Total: -33.75 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.45 Total: -20.10 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -2.13 Total: 2.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.75 -8.56 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003458959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.612 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds