Wall clock time and date at job start Tue Mar 31 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99897 * 2 1 4 4 C 1.53001 * 109.47327 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47201 * 64.99764 * 4 3 2 6 6 C 1.36669 * 119.77267 * 89.99657 * 5 4 3 7 7 S 1.76197 * 118.47250 * 0.02711 * 6 5 4 8 8 C 1.76198 * 100.00127 * 180.02562 * 7 6 5 9 9 H 1.08008 * 119.99993 * 359.97438 * 8 7 6 10 10 C 1.38799 * 120.00205 * 180.02562 * 8 7 6 11 11 N 1.31526 * 119.99884 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00319 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.47232 * 59.99482 * 12 10 8 14 14 H 1.48494 * 109.47494 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47054 * 300.00016 * 12 10 8 16 16 N 1.30963 * 123.05744 * 180.02562 * 6 5 4 17 17 C 1.34765 * 121.63529 * 359.97438 * 16 6 5 18 18 C 1.39808 * 121.57578 * 179.97438 * 17 16 6 19 19 C 1.37766 * 119.54423 * 180.02562 * 18 17 16 20 20 Cl 1.73595 * 119.60293 * 180.02562 * 19 18 17 21 21 C 1.39057 * 120.79426 * 359.97438 * 19 18 17 22 22 C 1.36719 * 120.72368 * 0.02562 * 21 19 18 23 23 C 1.39385 * 119.68328 * 359.97438 * 22 21 19 24 24 C 1.35337 * 119.78085 * 269.70185 * 5 4 3 25 25 O 1.21727 * 121.24787 * 359.97438 * 24 5 4 26 26 H 1.09005 * 109.46222 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46874 * 299.99543 * 1 2 3 28 28 H 1.08988 * 109.47404 * 60.00172 * 1 2 3 29 29 H 1.09006 * 109.46970 * 60.00393 * 3 2 1 30 30 H 1.09000 * 109.46725 * 300.00433 * 3 2 1 31 31 H 1.08995 * 109.46985 * 305.00128 * 4 3 2 32 32 H 1.08995 * 109.47181 * 185.00179 * 4 3 2 33 33 H 0.97005 * 120.00076 * 179.97438 * 11 10 8 34 34 H 1.08003 * 120.22466 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.64333 * 180.02562 * 21 19 18 36 36 H 1.08004 * 120.16182 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2642 1.3491 -2.3339 7 16 4.0930 3.0954 -2.1743 8 6 4.5707 3.5991 -3.7937 9 1 4.8545 2.8592 -4.5277 10 6 4.5833 4.9466 -4.1260 11 7 4.2382 5.8476 -3.2322 12 14 5.0904 5.4807 -5.8427 13 1 4.1737 4.8735 -6.8410 14 1 5.0194 6.9606 -5.9420 15 1 6.4806 5.0322 -6.1102 16 7 4.6620 0.8633 -3.4832 17 6 4.8150 -0.4618 -3.6756 18 6 5.2393 -0.9791 -4.9033 19 6 5.3811 -2.3411 -5.0540 20 17 5.9084 -2.9850 -6.5774 21 6 5.1080 -3.2062 -4.0001 22 6 4.6918 -2.7239 -2.7904 23 6 4.5399 -1.3501 -2.6102 24 6 4.0997 -0.7810 -1.3290 25 8 3.8523 -1.4931 -0.3734 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8899 29 1 1.6886 1.8464 0.8901 30 1 1.6885 1.8464 -0.8900 31 1 3.8514 0.5684 0.8409 32 1 3.9785 2.1766 0.0889 33 1 4.2474 6.7895 -3.4642 34 1 5.4535 -0.3155 -5.7280 35 1 5.2258 -4.2708 -4.1386 36 1 4.4818 -3.4041 -1.9781 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003494110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:00 Heat of formation + Delta-G solvation = -41.637600 kcal Electronic energy + Delta-G solvation = -24629.441077 eV Core-core repulsion = 20844.802934 eV Total energy + Delta-G solvation = -3784.638143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00336 -38.52304 -37.53294 -36.91000 -36.24127 -34.03363 -32.92067 -31.08794 -29.72602 -29.48434 -26.35275 -25.92433 -24.53933 -24.24911 -22.19384 -21.67310 -19.19937 -18.44998 -17.75871 -16.97110 -16.28471 -16.07142 -15.59128 -15.48313 -15.17864 -14.93505 -14.77159 -14.38376 -14.30340 -13.66552 -13.29179 -13.23262 -12.70744 -12.68878 -12.25500 -12.19978 -11.96493 -11.75493 -11.50140 -11.33277 -11.29787 -11.20070 -11.02620 -10.89047 -10.46042 -9.77030 -9.68272 -9.56213 -9.49768 -9.22356 -9.10085 -8.67213 -8.13195 -7.04814 -6.73599 -4.49198 0.82402 1.07557 2.13560 2.23662 2.66144 2.97209 3.02339 3.10153 3.10231 3.14366 3.77988 3.84998 4.33496 4.62262 4.67042 4.74895 4.96751 5.04282 5.06939 5.17841 5.23202 5.34724 5.42715 5.45810 5.49896 5.57094 5.65035 5.70856 5.89663 6.10436 6.18653 6.36525 6.42566 6.60026 6.87539 7.07764 7.23884 7.35392 8.18734 8.21803 8.47356 8.80530 10.33429 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.007443 B = 0.005627 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.803589 B = 4974.661206 C = 8194.496432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.043 3.957 4 C 0.097 3.903 5 N -0.531 5.531 6 C 0.334 3.666 7 S 0.176 5.824 8 C -0.539 4.539 9 H 0.119 0.881 10 C 0.078 3.922 11 N -0.870 5.870 12 Si 0.935 3.065 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.267 1.267 16 N -0.542 5.542 17 C 0.215 3.785 18 C -0.127 4.127 19 C 0.018 3.982 20 Cl -0.076 7.076 21 C -0.172 4.172 22 C -0.014 4.014 23 C -0.232 4.232 24 C 0.562 3.438 25 O -0.513 6.513 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.279 0.721 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 -8.930 2.554 9.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.035 4.035 4 C -0.026 4.026 5 N -0.256 5.256 6 C -0.031 4.031 7 S 0.420 5.580 8 C -0.687 4.687 9 H 0.137 0.863 10 C -0.132 4.132 11 N -0.503 5.503 12 Si 0.760 3.240 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.192 1.192 16 N -0.271 5.271 17 C 0.094 3.906 18 C -0.150 4.150 19 C -0.010 4.010 20 Cl -0.047 7.047 21 C -0.193 4.193 22 C -0.034 4.034 23 C -0.242 4.242 24 C 0.354 3.646 25 O -0.388 6.388 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.542 -8.058 3.369 9.096 hybrid contribution 0.299 -0.658 -1.590 1.747 sum -2.243 -8.715 1.779 9.173 Atomic orbital electron populations 1.22705 0.81524 1.02450 0.99754 1.88051 1.19176 1.26937 1.95371 1.22945 0.93118 0.85663 1.01779 1.21954 0.93819 1.00529 0.86336 1.46345 1.59240 1.07317 1.12697 1.26283 0.91089 1.01990 0.83756 1.83502 1.72177 0.82033 1.20281 1.23608 1.52159 0.95632 0.97292 0.86332 1.25198 0.93381 0.95042 0.99617 1.69881 1.43219 1.02519 1.34688 0.85926 0.79888 0.77248 0.80977 1.19208 1.20670 1.19162 1.69070 1.28162 1.11432 1.18437 1.18650 0.90929 0.89103 0.91930 1.20576 1.04220 0.92755 0.97414 1.20870 0.99754 0.93272 0.87084 1.98353 1.88821 1.86689 1.30823 1.20474 1.06966 0.99551 0.92302 1.20529 0.92974 0.93427 0.96462 1.20586 1.13284 0.95570 0.94752 1.18162 0.77195 0.80918 0.88358 1.90793 1.49884 1.59051 1.39077 0.89940 0.94233 0.94202 0.91448 0.91820 0.87711 0.86871 0.91114 0.83919 0.85041 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.07 9.57 -40.42 -0.39 -6.45 16 3 C 0.04 0.61 6.28 37.16 0.23 0.85 16 4 C 0.10 1.49 5.33 -4.04 -0.02 1.47 16 5 N -0.53 -9.99 2.61 -117.40 -0.31 -10.30 16 6 C 0.33 6.91 7.77 -88.49 -0.69 6.22 16 7 S 0.18 3.78 19.47 -107.50 -2.09 1.68 16 8 C -0.54 -13.34 9.23 30.94 0.29 -13.05 16 9 H 0.12 3.01 6.48 -52.48 -0.34 2.67 16 10 C 0.08 1.92 5.49 -17.47 -0.10 1.82 16 11 N -0.87 -21.85 13.22 55.49 0.73 -21.12 16 12 Si 0.93 19.39 29.55 -169.99 -5.02 14.37 16 13 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 16 N -0.54 -11.78 8.28 -10.89 -0.09 -11.87 16 17 C 0.22 4.25 6.62 -84.78 -0.56 3.69 16 18 C -0.13 -2.22 9.80 -39.17 -0.38 -2.60 16 19 C 0.02 0.28 6.31 -39.45 -0.25 0.03 16 20 Cl -0.08 -0.99 28.92 -51.86 -1.50 -2.49 16 21 C -0.17 -2.44 9.74 -39.83 -0.39 -2.83 16 22 C -0.01 -0.23 9.62 -39.70 -0.38 -0.61 16 23 C -0.23 -4.38 5.90 -104.74 -0.62 -5.00 16 24 C 0.56 11.07 7.27 -12.48 -0.09 10.98 16 25 O -0.51 -10.56 15.60 -0.02 0.00 -10.57 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.47 8.14 -51.94 -0.42 0.04 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.56 7.45 -51.93 -0.39 1.17 16 32 H 0.11 1.59 6.48 -51.93 -0.34 1.25 16 33 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.14 2.41 8.06 -52.48 -0.42 1.99 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.14 1.98 7.81 -52.48 -0.41 1.57 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -28.34 342.26 -8.92 -37.27 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.57 Total: 1.85 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.85 Total: 2.47 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.34 Total: -43.28 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.39 Total: -17.02 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -2.09 Total: 1.68 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.34 -8.92 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003494110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.371 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds