Wall clock time and date at job start Tue Mar 31 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48495 * 109.47067 * 269.99966 * 3 2 1 5 5 H 1.48505 * 109.46913 * 29.99936 * 3 2 1 6 6 H 1.48496 * 109.46967 * 149.99639 * 3 2 1 7 7 C 1.38814 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99798 * 179.97438 * 7 2 1 9 9 O 1.34856 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.34736 * 116.99682 * 179.97438 * 9 7 2 11 11 O 1.21507 * 120.00132 * 0.02562 * 10 9 7 12 12 C 1.47664 * 119.99955 * 179.97438 * 10 9 7 13 13 C 1.39662 * 120.15108 * 179.97438 * 12 10 9 14 14 C 1.37939 * 119.84120 * 179.74576 * 13 12 10 15 15 C 1.38372 * 120.15160 * 0.25509 * 14 13 12 16 16 S 1.76202 * 119.84322 * 180.02562 * 15 14 13 17 17 O 1.42102 * 106.40274 * 203.53801 * 16 15 14 18 18 O 1.42098 * 106.40316 * 336.46203 * 16 15 14 19 19 N 1.65602 * 107.21975 * 89.99930 * 16 15 14 20 20 C 1.47151 * 120.98380 * 269.71940 * 19 16 15 21 21 C 1.53709 * 108.16390 * 129.42956 * 20 19 16 22 22 O 1.42965 * 109.14572 * 52.54009 * 21 20 19 23 23 C 1.42965 * 114.16560 * 297.28559 * 22 21 20 24 24 C 1.47156 * 120.98153 * 90.00179 * 19 16 15 25 25 C 1.38374 * 120.31246 * 0.02562 * 15 14 13 26 26 C 1.37929 * 120.15596 * 0.02562 * 25 15 14 27 27 H 0.96998 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.08275 * 0.02816 * 13 12 10 29 29 H 1.07999 * 119.92209 * 180.28326 * 14 13 12 30 30 H 1.08998 * 109.68248 * 249.21403 * 20 19 16 31 31 H 1.09003 * 109.67846 * 9.76192 * 20 19 16 32 32 H 1.09000 * 109.65808 * 292.57810 * 21 20 19 33 33 H 1.09004 * 109.48798 * 172.39882 * 21 20 19 34 34 H 1.08998 * 109.51744 * 302.65874 * 23 22 21 35 35 H 1.08999 * 109.55193 * 182.52588 * 23 22 21 36 36 H 1.09003 * 109.68268 * 350.23309 * 24 19 16 37 37 H 1.09002 * 109.68290 * 110.75279 * 24 19 16 38 38 H 1.08003 * 119.92167 * 179.97438 * 25 15 14 39 39 H 1.07999 * 120.07887 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0082 -1.2022 0.0005 8 1 3.0882 -1.2022 0.0001 9 8 1.3339 -2.3700 0.0005 10 6 2.0677 -3.5000 0.0005 11 8 3.2811 -3.4364 0.0010 12 6 1.3973 -4.8157 0.0011 13 6 2.1549 -5.9890 0.0006 14 6 1.5221 -7.2147 0.0064 15 6 0.1401 -7.2833 0.0075 16 16 -0.6599 -8.8532 0.0157 17 8 -1.9559 -8.6461 -0.5291 18 8 0.2712 -9.7808 -0.5246 19 7 -0.8816 -9.2822 1.5997 20 6 0.1383 -10.0565 2.3247 21 6 0.4338 -9.3366 3.6503 22 8 -0.7958 -9.1035 4.3415 23 6 -1.7046 -8.2465 3.6462 24 6 -2.1071 -8.9058 2.3220 25 6 -0.6167 -6.1249 0.0022 26 6 0.0028 -4.8925 -0.0048 27 1 -0.4850 0.8400 0.0004 28 1 3.2337 -5.9369 0.0002 29 1 2.1066 -8.1228 0.0106 30 1 -0.2361 -11.0605 2.5244 31 1 1.0480 -10.1156 1.7270 32 1 0.9244 -8.3843 3.4490 33 1 1.0846 -9.9588 4.2648 34 1 -1.2217 -7.2903 3.4449 35 1 -2.5928 -8.0844 4.2569 36 1 -2.6852 -8.2024 1.7226 37 1 -2.7041 -9.7958 2.5210 38 1 -1.6950 -6.1858 0.0026 39 1 -0.5891 -3.9892 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003564671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:25 Heat of formation + Delta-G solvation = -158.217258 kcal Electronic energy + Delta-G solvation = -27516.920717 eV Core-core repulsion = 23324.632568 eV Total energy + Delta-G solvation = -4192.288148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.69488 -39.49301 -38.30598 -37.48188 -36.03774 -35.36514 -35.13370 -32.46746 -31.73654 -31.39566 -30.98228 -27.40087 -26.00780 -24.56712 -24.06233 -22.65529 -21.80446 -20.54391 -19.29128 -18.38394 -17.97761 -17.79391 -17.10463 -16.73663 -16.13383 -15.67627 -15.47177 -15.36006 -15.05725 -14.75782 -14.64545 -14.62079 -14.35721 -14.27161 -13.49413 -13.39442 -12.97303 -12.88326 -12.46960 -12.42406 -12.39295 -12.24299 -11.98677 -11.81065 -11.74394 -11.40866 -11.18130 -11.11058 -10.82841 -10.67338 -10.56840 -10.52948 -10.07499 -9.32404 -9.28424 -9.14974 -9.00582 -8.80912 -6.68666 -4.28354 0.09988 0.54872 1.38735 2.56924 2.95356 3.05883 3.11826 3.16977 3.50634 3.54573 3.71692 4.02553 4.03464 4.28034 4.35207 4.44151 4.74298 4.79701 4.84635 4.85031 4.87879 4.93940 5.01434 5.22832 5.24282 5.37651 5.42798 5.43543 5.58467 5.69391 5.72485 5.82915 5.95965 6.06698 6.17857 6.42129 6.71958 6.78102 6.86385 7.15571 7.68906 8.47008 8.79205 9.56997 10.47894 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.002845 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.831075 B = 9838.300238 C =10135.560599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.042 3.958 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.370 4.370 8 H 0.101 0.899 9 O -0.197 6.197 10 C 0.414 3.586 11 O -0.549 6.549 12 C -0.023 4.023 13 C -0.095 4.095 14 C -0.033 4.033 15 C -0.677 4.677 16 S 2.695 3.305 17 O -0.953 6.953 18 O -0.955 6.955 19 N -1.002 6.002 20 C 0.087 3.913 21 C 0.045 3.955 22 O -0.378 6.378 23 C 0.045 3.955 24 C 0.087 3.913 25 C -0.031 4.031 26 C -0.097 4.097 27 H 0.275 0.725 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -17.722 6.427 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.445 4.445 8 H 0.119 0.881 9 O -0.103 6.103 10 C 0.263 3.737 11 O -0.448 6.448 12 C -0.025 4.025 13 C -0.115 4.115 14 C -0.053 4.053 15 C -0.765 4.765 16 S 2.788 3.212 17 O -0.943 6.943 18 O -0.945 6.945 19 N -0.841 5.841 20 C -0.038 4.038 21 C -0.033 4.033 22 O -0.296 6.296 23 C -0.034 4.034 24 C -0.038 4.038 25 C -0.051 4.051 26 C -0.116 4.116 27 H 0.085 0.915 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.159 0.841 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.460 -18.087 5.880 19.534 hybrid contribution 0.798 1.648 -0.049 1.832 sum -3.661 -16.439 5.831 17.822 Atomic orbital electron populations 1.69962 1.06204 1.28472 1.43749 1.25474 0.95931 0.99218 0.95797 0.85579 0.79123 0.79008 0.79039 1.19566 1.20028 1.18811 1.21438 0.92791 0.79569 1.50735 0.88102 1.83876 1.39399 1.13379 1.73636 1.20662 0.86002 0.85352 0.81720 1.90647 1.14812 1.87616 1.51720 1.19819 0.93815 0.92153 0.96710 1.21344 1.01101 0.90632 0.98396 1.20718 0.92048 0.98429 0.94081 1.30871 1.05268 1.20931 1.19443 1.01904 0.73614 0.73736 0.71959 1.93579 1.38721 1.86549 1.75490 1.93569 1.64579 1.60676 1.75688 1.57907 1.26855 1.68105 1.31240 1.22228 0.91761 0.95557 0.94255 1.23078 0.86729 1.00453 0.93072 1.87956 1.27904 1.68676 1.45014 1.23011 0.94341 0.92980 0.93022 1.22155 0.85716 1.01603 0.94354 1.20830 0.99811 0.91016 0.93412 1.21760 0.94048 0.98746 0.97080 0.91499 0.83890 0.84186 0.89886 0.88158 0.92127 0.87598 0.92078 0.87486 0.88063 0.89899 0.84129 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.34 13.67 55.49 0.76 -22.59 16 2 C 0.04 1.12 5.50 -17.52 -0.10 1.02 16 3 Si 0.95 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.37 -10.45 9.65 30.95 0.30 -10.15 16 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 9 O -0.20 -5.40 8.99 -21.66 -0.19 -5.59 16 10 C 0.41 10.17 7.84 34.58 0.27 10.44 16 11 O -0.55 -14.52 15.59 -19.27 -0.30 -14.82 16 12 C -0.02 -0.45 5.87 -104.98 -0.62 -1.07 16 13 C -0.10 -1.56 9.60 -39.16 -0.38 -1.94 16 14 C -0.03 -0.45 9.50 -39.64 -0.38 -0.83 16 15 C -0.68 -9.04 5.98 -39.48 -0.24 -9.27 16 16 S 2.70 32.38 5.70 -107.50 -0.61 31.76 16 17 O -0.95 -13.44 16.07 -57.17 -0.92 -14.35 16 18 O -0.95 -13.19 16.06 -57.17 -0.92 -14.11 16 19 N -1.00 -9.37 3.34 -112.82 -0.38 -9.74 16 20 C 0.09 0.68 6.60 -3.32 -0.02 0.65 16 21 C 0.05 0.35 7.00 37.53 0.26 0.61 16 22 O -0.38 -3.56 10.74 -35.23 -0.38 -3.93 16 23 C 0.04 0.35 6.99 37.31 0.26 0.62 16 24 C 0.09 0.69 6.57 -3.53 -0.02 0.67 16 25 C -0.03 -0.44 9.50 -39.64 -0.38 -0.82 16 26 C -0.10 -1.68 9.62 -39.16 -0.38 -2.05 16 27 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.14 2.26 7.65 -52.49 -0.40 1.86 16 29 H 0.14 1.51 7.60 -52.49 -0.40 1.11 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.70 7.24 -51.93 -0.38 0.32 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.75 7.25 -51.93 -0.38 0.37 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.14 1.65 7.60 -52.48 -0.40 1.25 16 39 H 0.15 2.71 7.61 -52.49 -0.40 2.31 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -35.03 350.21 -8.48 -43.51 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.38 Total: 1.61 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.41 Total: -12.12 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.38 Total: -32.33 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -2.71 Total: -52.80 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 32.38 SS G_CDS: -0.61 Total: 31.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.03 -8.48 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003564671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.708 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds