Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31652 * 1 3 3 Si 1.86796 * 119.99800 * 2 1 4 4 H 1.48503 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47344 * 300.00393 * 3 2 1 6 6 H 1.48500 * 109.47075 * 60.00041 * 3 2 1 7 7 C 1.38641 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99409 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00521 * 0.02562 * 7 2 1 10 10 C 1.76201 * 100.00056 * 179.97438 * 9 7 2 11 11 N 1.31596 * 126.40555 * 0.02562 * 10 9 7 12 12 N 1.28509 * 110.07912 * 179.97438 * 11 10 9 13 13 C 1.31527 * 110.00267 * 359.75513 * 12 11 10 14 14 C 1.47755 * 126.45093 * 180.24798 * 13 12 11 15 15 C 1.39625 * 120.15108 * 17.69371 * 14 13 12 16 16 C 1.37941 * 119.84789 * 179.76877 * 15 14 13 17 17 C 1.38374 * 120.14784 * 0.49269 * 16 15 14 18 18 C 1.38369 * 120.30279 * 359.78309 * 17 16 15 19 19 C 1.37943 * 120.15163 * 359.95682 * 18 17 16 20 20 N 1.36963 * 126.40083 * 179.97438 * 10 9 7 21 21 C 1.40201 * 127.18724 * 359.97438 * 20 10 9 22 22 C 1.38838 * 120.04366 * 68.17253 * 21 20 10 23 23 C 1.38104 * 119.95698 * 179.97438 * 22 21 20 24 24 C 1.38487 * 120.04464 * 0.27140 * 23 22 21 25 25 F 1.35096 * 119.95647 * 179.72293 * 24 23 22 26 26 C 1.38481 * 120.08070 * 359.45655 * 24 23 22 27 27 C 1.38104 * 120.04228 * 0.54424 * 26 24 23 28 28 H 0.96990 * 120.00326 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.07473 * 0.02562 * 15 14 13 30 30 H 1.08004 * 119.92717 * 180.25597 * 16 15 14 31 31 H 1.07998 * 119.84642 * 179.76467 * 17 16 15 32 32 H 1.08004 * 119.92428 * 179.97438 * 18 17 16 33 33 H 1.07991 * 120.07840 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.02191 * 0.02562 * 22 21 20 35 35 H 1.08004 * 119.97859 * 180.02562 * 23 22 21 36 36 H 1.08005 * 119.98000 * 180.27706 * 26 24 23 37 37 H 1.08001 * 120.02198 * 179.75260 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7105 1.3464 0.0006 5 1 1.8917 2.3965 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0097 -1.2007 0.0005 8 1 3.0897 -1.2006 0.0001 9 16 1.1288 -2.7266 0.0005 10 6 2.4786 -3.8592 0.0005 11 7 3.7577 -3.5498 0.0010 12 7 4.4702 -4.6192 0.0014 13 6 3.6912 -5.6790 0.0065 14 6 4.1288 -7.0902 0.0137 15 6 5.4350 -7.4175 0.3827 16 6 5.8355 -8.7375 0.3919 17 6 4.9490 -9.7352 0.0266 18 6 3.6548 -9.4174 -0.3457 19 6 3.2396 -8.1020 -0.3541 20 7 2.3927 -5.2261 0.0010 21 6 1.2248 -6.0018 0.0021 22 6 0.3977 -6.0144 -1.1129 23 6 -0.7520 -6.7795 -1.1101 24 6 -1.0831 -7.5294 0.0061 25 9 -2.2111 -8.2729 0.0090 26 6 -0.2565 -7.5225 1.1171 27 6 0.8940 -6.7586 1.1181 28 1 -0.4850 0.8399 0.0004 29 1 6.1290 -6.6394 0.6643 30 1 6.8444 -8.9925 0.6811 31 1 5.2689 -10.7668 0.0319 32 1 2.9681 -10.2010 -0.6300 33 1 2.2291 -7.8553 -0.6445 34 1 0.6537 -5.4270 -1.9823 35 1 -1.3955 -6.7900 -1.9775 36 1 -0.5140 -8.1114 1.9851 37 1 1.5364 -6.7503 1.9863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003572485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = 85.404099 kcal Electronic energy + Delta-G solvation = -25786.906796 eV Core-core repulsion = 21957.157323 eV Total energy + Delta-G solvation = -3829.749473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.09147 -42.34092 -39.27360 -38.86324 -34.41679 -32.73939 -32.24776 -31.44873 -30.95914 -29.29264 -28.79972 -25.77880 -24.01570 -23.51531 -22.98477 -22.62188 -21.35399 -20.51274 -18.72496 -17.85913 -17.52818 -16.79117 -16.63037 -15.86001 -15.70994 -15.45347 -15.11687 -15.00232 -14.71462 -14.49862 -13.83106 -13.77331 -13.58345 -13.44537 -13.23760 -13.08037 -12.85027 -12.55114 -11.57583 -11.47605 -11.41815 -11.21482 -11.17324 -11.08292 -10.80792 -10.32317 -10.17347 -10.09210 -10.01312 -9.40356 -9.30666 -9.02511 -8.94564 -8.71834 -8.39499 -6.84475 -6.54714 -4.29616 0.67594 0.93186 0.96348 1.34132 2.25146 2.35323 3.07174 3.13857 3.20300 3.24459 3.31076 3.36744 3.89152 3.95075 4.00761 4.38114 4.51094 4.60166 4.79608 4.87376 4.89763 4.94968 4.95539 5.04804 5.08426 5.31368 5.35589 5.48182 5.64118 5.77813 5.79315 5.83898 5.88735 5.95718 6.03085 6.18973 6.31000 6.41243 6.47731 6.54566 6.60276 6.86117 7.33355 7.50070 8.30024 8.97451 9.25170 10.53285 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.004160 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.014662 B = 6728.893100 C = 9061.632146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.077 3.923 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.107 0.893 9 S 0.155 5.845 10 C 0.181 3.819 11 N -0.301 5.301 12 N -0.262 5.262 13 C 0.177 3.823 14 C 0.007 3.993 15 C -0.084 4.084 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.114 4.114 20 N -0.438 5.438 21 C 0.121 3.879 22 C -0.071 4.071 23 C -0.138 4.138 24 C 0.107 3.893 25 F -0.136 7.136 26 C -0.142 4.142 27 C -0.073 4.073 28 H 0.275 0.725 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -19.483 0.029 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.757 3.243 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.686 4.686 8 H 0.125 0.875 9 S 0.390 5.610 10 C -0.187 4.187 11 N -0.146 5.146 12 N -0.102 5.102 13 C -0.088 4.088 14 C 0.004 3.996 15 C -0.105 4.105 16 C -0.136 4.136 17 C -0.138 4.138 18 C -0.134 4.134 19 C -0.134 4.134 20 N -0.133 5.133 21 C 0.029 3.971 22 C -0.091 4.091 23 C -0.158 4.158 24 C 0.088 3.912 25 F -0.114 7.114 26 C -0.161 4.161 27 C -0.092 4.092 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.355 -18.552 0.022 18.555 hybrid contribution 0.350 0.413 0.007 0.541 sum 0.705 -18.139 0.030 18.153 Atomic orbital electron populations 1.69953 1.06091 1.28537 1.46473 1.25079 0.95193 0.99699 0.93269 0.85868 0.80207 0.80196 0.78001 1.18744 1.20275 1.20282 1.23306 0.97375 0.89114 1.58805 0.87494 1.83624 0.97121 0.95274 1.85026 1.28718 1.02407 0.84716 1.02834 1.74825 0.98644 1.18219 1.22957 1.74251 1.26330 0.94264 1.15399 1.22712 0.80042 0.95288 1.10724 1.17504 0.94439 0.86677 1.00976 1.21224 0.94600 0.96805 0.97832 1.21078 0.99831 0.92398 1.00324 1.21227 0.93790 0.99311 0.99489 1.20983 0.96316 0.95755 1.00386 1.21403 0.99579 0.92600 0.99806 1.43647 1.04706 1.05298 1.59677 1.17495 0.87905 0.96479 0.95216 1.21149 0.93147 0.97134 0.97638 1.21030 0.98147 0.98020 0.98591 1.17742 0.84135 0.93751 0.95575 1.91515 1.48619 1.74394 1.96904 1.20976 0.94683 1.01960 0.98482 1.21060 0.96258 0.94949 0.96968 0.91541 0.84770 0.85596 0.86023 0.85855 0.85850 0.83792 0.83560 0.83756 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 13.22 55.48 0.73 -23.27 16 2 C 0.08 2.06 5.49 -17.48 -0.10 1.97 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.79 9.37 30.88 0.29 -14.50 16 8 H 0.11 3.05 6.92 -52.48 -0.36 2.68 16 9 S 0.16 3.81 21.58 -107.50 -2.32 1.49 16 10 C 0.18 4.16 8.02 -87.68 -0.70 3.46 16 11 N -0.30 -7.46 11.03 30.81 0.34 -7.13 16 12 N -0.26 -5.84 12.01 32.60 0.39 -5.45 16 13 C 0.18 3.37 7.67 -153.63 -1.18 2.20 16 14 C 0.01 0.10 5.87 -104.97 -0.62 -0.51 16 15 C -0.08 -1.13 9.70 -39.17 -0.38 -1.51 16 16 C -0.12 -1.24 10.03 -39.64 -0.40 -1.63 16 17 C -0.12 -1.13 10.04 -39.48 -0.40 -1.53 16 18 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 19 C -0.11 -1.45 8.61 -39.17 -0.34 -1.79 16 20 N -0.44 -8.34 2.85 -58.09 -0.17 -8.50 16 21 C 0.12 1.85 3.31 -83.58 -0.28 1.58 16 22 C -0.07 -0.97 9.69 -39.41 -0.38 -1.35 16 23 C -0.14 -1.56 10.02 -39.54 -0.40 -1.95 16 24 C 0.11 1.20 7.30 -39.40 -0.29 0.91 16 25 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 26 C -0.14 -1.52 10.02 -39.54 -0.40 -1.91 16 27 C -0.07 -0.94 8.56 -39.41 -0.34 -1.27 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.13 1.83 7.96 -52.48 -0.42 1.41 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.12 1.56 4.92 -52.49 -0.26 1.31 16 34 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 36 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -31.20 347.08 -10.20 -41.40 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.13 Total: 1.23 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -6.29 Total: -19.46 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 1.30 Total: -44.34 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -2.32 Total: 1.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.20 -10.20 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.806 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds