Wall clock time and date at job start Tue Mar 31 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00080 * 2 1 4 4 N 1.34780 * 119.99647 * 179.72451 * 2 1 3 5 5 C 1.46505 * 119.99832 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.35861 * 34.99508 * 5 4 2 7 7 C 1.50103 * 109.36060 * 275.27542 * 5 4 2 8 8 C 1.31288 * 123.98843 * 256.95231 * 7 5 4 9 9 C 1.47102 * 118.18159 * 179.59331 * 8 7 5 10 10 O 1.21607 * 119.99856 * 0.05783 * 9 8 7 11 11 N 1.34777 * 119.99963 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99668 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47251 * 324.99847 * 12 11 9 14 14 C 1.50705 * 109.46895 * 204.99781 * 12 11 9 15 15 H 1.07995 * 120.00188 * 266.35883 * 14 12 11 16 16 C 1.37878 * 119.99773 * 86.35553 * 14 12 11 17 17 N 1.31518 * 119.99604 * 185.14680 * 16 14 12 18 18 Si 1.86799 * 120.00195 * 5.14367 * 16 14 12 19 19 H 1.48494 * 109.47379 * 86.02384 * 18 16 14 20 20 H 1.48500 * 109.46962 * 206.02881 * 18 16 14 21 21 H 1.48507 * 109.47052 * 326.02408 * 18 16 14 22 22 C 1.50695 * 109.47291 * 85.00151 * 12 11 9 23 23 N 1.34779 * 120.00042 * 206.00422 * 22 12 11 24 24 O 1.21281 * 120.00144 * 25.99958 * 22 12 11 25 25 C 1.50097 * 123.71257 * 359.65539 * 8 7 5 26 26 C 1.53000 * 110.13586 * 17.12782 * 25 8 7 27 27 H 1.09004 * 109.63432 * 69.96023 * 26 25 8 28 28 O 1.42899 * 109.79370 * 190.44984 * 26 25 8 29 29 C 1.53004 * 109.36136 * 154.72792 * 5 4 2 30 30 H 1.09000 * 109.63341 * 190.35725 * 29 5 4 31 31 O 1.42902 * 109.63077 * 310.75247 * 29 5 4 32 32 H 1.08997 * 109.47115 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.47403 * 119.99988 * 1 2 3 34 34 H 1.09002 * 109.46878 * 239.99876 * 1 2 3 35 35 H 0.97000 * 120.00375 * 0.02562 * 4 2 1 36 36 H 1.07991 * 118.10497 * 76.93799 * 7 5 4 37 37 H 0.97001 * 119.99720 * 359.97438 * 11 9 8 38 38 H 0.97005 * 119.99553 * 179.97438 * 17 16 14 39 39 H 0.96993 * 120.00272 * 5.03123 * 23 22 12 40 40 H 0.97002 * 119.99393 * 185.04202 * 23 22 12 41 41 H 1.09001 * 109.35718 * 256.92790 * 25 8 7 42 42 H 1.08995 * 109.35887 * 137.33813 * 25 8 7 43 43 H 0.96702 * 114.00589 * 299.11597 * 28 26 25 44 44 H 0.96701 * 113.99684 * 179.97438 * 31 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0056 5 6 3.6459 -1.1673 0.0050 6 1 4.0074 -0.3219 0.5904 7 6 4.1429 -1.0442 -1.4059 8 6 4.6178 -2.0476 -2.1070 9 6 5.0623 -1.7840 -3.4842 10 8 4.9853 -0.6606 -3.9435 11 7 5.5554 -2.7874 -4.2369 12 6 5.9986 -2.5247 -5.6083 13 1 5.3573 -1.7669 -6.0585 14 6 5.9170 -3.7953 -6.4146 15 1 6.7844 -4.4319 -6.5083 16 6 4.7351 -4.1450 -7.0324 17 7 4.6335 -5.3013 -7.6508 18 14 3.2783 -2.9766 -6.9913 19 1 3.3876 -2.0093 -8.1127 20 1 2.0185 -3.7512 -7.1267 21 1 3.2704 -2.2404 -5.7015 22 6 7.4225 -2.0317 -5.5904 23 7 7.8779 -1.2510 -6.5901 24 8 8.1586 -2.3374 -4.6763 25 6 4.7318 -3.4496 -1.5832 26 6 3.8553 -3.6207 -0.3409 27 1 2.8040 -3.5948 -0.6280 28 8 4.1497 -4.8681 0.2909 29 6 4.1533 -2.4696 0.6277 30 1 5.2276 -2.3996 0.7984 31 8 3.4840 -2.7010 1.8689 32 1 -0.3633 1.0276 -0.0005 33 1 -0.3634 -0.5138 -0.8900 34 1 -0.3633 -0.5139 0.8900 35 1 1.6958 -2.0073 0.0093 36 1 4.1083 -0.0719 -1.8745 37 1 5.6176 -3.6833 -3.8702 38 1 3.8018 -5.5475 -8.0852 39 1 7.2709 -0.9463 -7.2826 40 1 8.8129 -0.9939 -6.6172 41 1 5.7704 -3.6549 -1.3237 42 1 4.4085 -4.1502 -2.3530 43 1 3.9835 -5.6405 -0.2667 44 1 3.7582 -3.5122 2.3182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003839682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:40 Heat of formation + Delta-G solvation = -200.053391 kcal Electronic energy + Delta-G solvation = -31080.149792 eV Core-core repulsion = 26611.420467 eV Total energy + Delta-G solvation = -4468.729325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72487 -39.48268 -38.81792 -38.01014 -36.24559 -35.59400 -34.34677 -33.81761 -32.88093 -32.49207 -30.75180 -29.56308 -28.85162 -27.86583 -23.88442 -23.58957 -22.69384 -21.25814 -20.55812 -19.46552 -18.56058 -18.17021 -17.55763 -17.30734 -16.84860 -16.75845 -16.36937 -16.16992 -16.09965 -15.51812 -15.05759 -14.84028 -14.66128 -14.35192 -14.07588 -13.81994 -13.64632 -13.37450 -13.21042 -13.11145 -12.97529 -12.84037 -12.79286 -12.49909 -12.23512 -12.20868 -11.63541 -11.26795 -11.15550 -11.03201 -10.53034 -10.20899 -10.19186 -10.06352 -9.85636 -9.51160 -9.39930 -9.26776 -9.15139 -8.99223 -8.95438 -8.10996 -6.55901 -4.69098 1.44939 2.54561 3.03766 3.12015 3.14912 3.25578 3.49772 3.65703 3.70669 3.72494 3.89387 4.05883 4.32336 4.48589 4.59272 4.66630 4.70701 4.84529 4.91688 5.08174 5.12097 5.19000 5.24287 5.31460 5.45608 5.54769 5.66713 5.73939 5.78933 5.97021 6.20280 6.27590 6.35075 6.59641 6.96464 7.20348 7.22054 7.34314 7.39063 7.47061 7.85341 8.06385 8.10161 8.40647 8.50475 8.87494 9.01307 9.09122 10.52702 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.003735 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.029160 B = 7495.413926 C = 7739.068357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.512 3.488 3 O -0.544 6.544 4 N -0.712 5.712 5 C 0.188 3.812 6 H 0.111 0.889 7 C -0.107 4.107 8 C -0.136 4.136 9 C 0.534 3.466 10 O -0.558 6.558 11 N -0.686 5.686 12 C 0.221 3.779 13 H 0.071 0.929 14 C -0.529 4.529 15 H 0.086 0.914 16 C 0.095 3.905 17 N -0.865 5.865 18 Si 0.869 3.131 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.254 1.254 22 C 0.529 3.471 23 N -0.856 5.856 24 O -0.566 6.566 25 C -0.124 4.124 26 C 0.079 3.921 27 H 0.065 0.935 28 O -0.564 6.564 29 C 0.108 3.892 30 H 0.081 0.919 31 O -0.555 6.555 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.403 0.597 36 H 0.136 0.864 37 H 0.398 0.602 38 H 0.274 0.726 39 H 0.400 0.600 40 H 0.389 0.611 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.388 0.612 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 1.654 13.471 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.421 6.421 4 N -0.365 5.365 5 C 0.083 3.917 6 H 0.129 0.871 7 C -0.128 4.128 8 C -0.140 4.140 9 C 0.320 3.680 10 O -0.439 6.439 11 N -0.336 5.336 12 C 0.116 3.884 13 H 0.089 0.911 14 C -0.567 4.567 15 H 0.104 0.896 16 C -0.114 4.114 17 N -0.499 5.499 18 Si 0.694 3.306 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.177 1.177 22 C 0.315 3.685 23 N -0.419 5.419 24 O -0.444 6.444 25 C -0.161 4.161 26 C 0.019 3.981 27 H 0.083 0.917 28 O -0.371 6.371 29 C 0.048 3.952 30 H 0.099 0.901 31 O -0.361 6.361 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.238 0.762 36 H 0.154 0.846 37 H 0.234 0.766 38 H 0.084 0.916 39 H 0.227 0.773 40 H 0.219 0.781 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.237 0.763 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.549 3.698 14.009 15.900 hybrid contribution -0.682 -1.086 -0.908 1.571 sum -7.232 2.612 13.101 15.190 Atomic orbital electron populations 1.21911 0.91540 1.05564 1.04287 1.20835 0.90676 0.83402 0.75128 1.90735 1.70762 1.31316 1.49288 1.45924 1.05847 1.09118 1.75579 1.19688 0.81073 0.97692 0.93221 0.87079 1.22945 0.95211 1.00280 0.94410 1.20913 1.02455 0.95350 0.95329 1.18583 0.78355 0.85530 0.85513 1.90718 1.57353 1.22516 1.73341 1.47152 1.60589 1.10993 1.14868 1.18922 0.88758 0.98899 0.81776 0.91148 1.20711 0.99986 1.05202 1.30831 0.89552 1.25048 0.98299 0.94756 0.93251 1.69884 1.27514 1.20035 1.32459 0.86925 0.81726 0.81374 0.80567 1.19374 1.20850 1.17727 1.21458 0.91459 0.75383 0.80233 1.43758 1.13697 1.54758 1.29649 1.90586 1.59692 1.58314 1.35790 1.21230 1.02491 0.94597 0.97796 1.22510 0.98102 0.85064 0.92414 0.91709 1.86352 1.90505 1.15562 1.44729 1.22106 0.97218 0.91975 0.83854 0.90079 1.86420 1.67407 1.47954 1.34362 0.88923 0.89340 0.89344 0.76189 0.84610 0.76631 0.91625 0.77256 0.78123 0.88362 0.89098 0.76312 0.76334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.32 36.01 0.37 -1.01 16 2 C 0.51 6.36 7.89 -10.98 -0.09 6.28 16 3 O -0.54 -9.18 16.74 5.56 0.09 -9.09 16 4 N -0.71 -7.86 4.62 -55.21 -0.25 -8.11 16 5 C 0.19 2.33 2.56 -69.37 -0.18 2.15 16 6 H 0.11 1.50 7.57 -51.93 -0.39 1.11 16 7 C -0.11 -1.63 8.92 -36.39 -0.32 -1.95 16 8 C -0.14 -2.14 5.78 -103.11 -0.60 -2.73 16 9 C 0.53 10.93 7.61 -12.66 -0.10 10.84 16 10 O -0.56 -13.19 15.62 5.27 0.08 -13.11 16 11 N -0.69 -14.30 4.60 -57.26 -0.26 -14.56 16 12 C 0.22 5.02 1.74 -70.24 -0.12 4.90 16 13 H 0.07 1.64 5.24 -51.93 -0.27 1.37 16 14 C -0.53 -13.18 9.03 -34.44 -0.31 -13.49 16 15 H 0.09 2.39 8.05 -52.49 -0.42 1.97 16 16 C 0.10 2.40 5.47 -17.82 -0.10 2.30 16 17 N -0.87 -23.04 13.96 55.43 0.77 -22.27 16 18 Si 0.87 19.35 26.99 -169.99 -4.59 14.76 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.25 -5.79 6.86 56.52 0.39 -5.41 16 22 C 0.53 11.77 7.24 -10.99 -0.08 11.69 16 23 N -0.86 -15.02 8.87 31.22 0.28 -14.75 16 24 O -0.57 -13.95 17.47 5.56 0.10 -13.85 16 25 C -0.12 -1.49 4.67 -28.17 -0.13 -1.62 16 26 C 0.08 0.76 3.21 -26.54 -0.09 0.67 16 27 H 0.07 0.59 6.90 -51.93 -0.36 0.23 16 28 O -0.56 -4.73 12.63 -49.30 -0.62 -5.36 16 29 C 0.11 1.13 2.99 -26.54 -0.08 1.05 16 30 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 31 O -0.56 -5.38 12.91 -49.30 -0.64 -6.02 16 32 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.40 3.52 7.40 -40.82 -0.30 3.22 16 36 H 0.14 2.44 7.16 -52.49 -0.38 2.06 16 37 H 0.40 7.59 6.80 -40.82 -0.28 7.32 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.40 6.15 8.83 -40.82 -0.36 5.79 16 40 H 0.39 5.85 8.93 -40.82 -0.36 5.49 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.06 7.20 -51.93 -0.37 0.68 16 43 H 0.39 2.05 9.09 45.56 0.41 2.46 16 44 H 0.39 2.78 8.45 45.56 0.38 3.16 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -36.12 373.50 -5.19 -41.31 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -3.96 Total: 26.34 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: -1.82 Total: 19.07 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.53 Total: -59.69 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.99 Total: -47.43 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.59 Total: 14.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.12 -5.19 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003839682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.740 kcal (2) G-P(sol) polarization free energy of solvation -36.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds