Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38106 * 120.00019 * 86.69493 * 3 2 1 5 5 C 1.41817 * 120.00069 * 168.38772 * 4 3 2 6 6 C 1.38688 * 126.89507 * 313.81692 * 5 4 3 7 7 N 1.34063 * 107.78238 * 180.16003 * 6 5 4 8 8 C 1.46503 * 125.09085 * 179.84538 * 7 6 5 9 9 C 1.50701 * 109.47015 * 124.72492 * 8 7 6 10 10 H 1.07997 * 119.99912 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00011 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99964 * 179.72196 * 11 9 8 13 13 Si 1.86802 * 119.99981 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46920 * 269.73023 * 13 11 9 15 15 H 1.48501 * 109.46912 * 29.72565 * 13 11 9 16 16 H 1.48498 * 109.47302 * 149.72865 * 13 11 9 17 17 N 1.39731 * 109.80817 * 359.57731 * 7 6 5 18 18 C 1.31306 * 109.25881 * 0.26890 * 17 7 6 19 19 C 1.48208 * 126.53248 * 179.97438 * 18 17 7 20 20 C 1.39425 * 120.10514 * 144.69291 * 19 18 17 21 21 C 1.37953 * 119.89815 * 179.76912 * 20 19 18 22 22 C 1.38569 * 120.09957 * 0.52846 * 21 20 19 23 23 F 1.35100 * 119.89692 * 179.72124 * 22 21 20 24 24 C 1.38573 * 120.20633 * 359.70686 * 22 21 20 25 25 C 1.37946 * 120.10767 * 0.03831 * 24 22 21 26 26 C 1.46811 * 119.99799 * 266.69733 * 3 2 1 27 27 O 1.21601 * 119.99834 * 173.00697 * 26 3 2 28 28 O 1.34850 * 120.00279 * 353.00710 * 26 3 2 29 29 H 1.08007 * 120.00000 * 348.38696 * 4 3 2 30 30 H 1.07998 * 126.10745 * 0.02562 * 6 5 4 31 31 H 1.08995 * 109.47400 * 4.72221 * 8 7 6 32 32 H 1.09003 * 109.46467 * 244.71728 * 8 7 6 33 33 H 0.97003 * 119.99480 * 180.26660 * 12 11 9 34 34 H 1.08000 * 120.05230 * 0.02562 * 20 19 18 35 35 H 1.07998 * 119.95236 * 180.25732 * 21 20 19 36 36 H 1.08007 * 119.94545 * 180.02562 * 24 22 21 37 37 H 1.07991 * 120.05629 * 180.02562 * 25 24 22 38 38 H 0.96697 * 116.99559 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2586 -0.0680 -1.1940 5 6 4.6549 0.1787 -1.2209 6 6 5.3279 1.2227 -0.6039 7 7 6.6328 1.0892 -0.8812 8 6 7.6888 1.9930 -0.4185 9 6 8.7410 1.2022 0.3154 10 1 8.6335 0.1333 0.4264 11 6 9.8402 1.8433 0.8459 12 7 10.7557 1.1539 1.4912 13 14 10.0258 3.6922 0.6544 14 1 10.7734 3.9880 -0.5941 15 1 8.6817 4.3202 0.5870 16 1 10.7695 4.2383 1.8180 17 7 6.8351 -0.0446 -1.6725 18 6 5.6795 -0.6238 -1.9029 19 6 5.4519 -1.8528 -2.6995 20 6 4.4578 -2.7554 -2.3240 21 6 4.2464 -3.8956 -3.0713 22 6 5.0275 -4.1498 -4.1873 23 9 4.8207 -5.2704 -4.9129 24 6 6.0199 -3.2580 -4.5615 25 6 6.2352 -2.1126 -3.8234 26 6 3.3020 0.0742 1.2693 27 8 4.5113 -0.0530 1.2806 28 8 2.6352 0.2829 2.4227 29 1 2.7352 -0.3096 -2.1074 30 1 4.8805 2.0048 -0.0085 31 1 7.2612 2.7385 0.2518 32 1 8.1413 2.4918 -1.2756 33 1 11.5271 1.6056 1.8678 34 1 3.8514 -2.5603 -1.4518 35 1 3.4738 -4.5933 -2.7836 36 1 6.6260 -3.4601 -5.4323 37 1 7.0085 -1.4180 -4.1160 38 1 3.1616 0.3241 3.2328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003887877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = 19.818528 kcal Electronic energy + Delta-G solvation = -27962.208510 eV Core-core repulsion = 23686.862162 eV Total energy + Delta-G solvation = -4275.346348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.99421 -40.98956 -39.85918 -38.81083 -36.78850 -36.09957 -34.47099 -33.46913 -32.42718 -31.28350 -30.40427 -29.51627 -27.71204 -24.97573 -23.73543 -23.12417 -22.55205 -21.56644 -20.20979 -19.57903 -18.89254 -17.75599 -17.34021 -17.13976 -16.66489 -16.25977 -15.70494 -15.68176 -15.43652 -14.95530 -14.77821 -14.40123 -13.96735 -13.89566 -13.81161 -13.62552 -13.47854 -13.31817 -13.02653 -12.80434 -12.71840 -12.53733 -12.50405 -12.09825 -12.03469 -11.45246 -11.24280 -11.16745 -10.96569 -10.69966 -10.51392 -10.30565 -9.83107 -9.68505 -9.29005 -9.23629 -8.87165 -8.34804 -7.68242 -6.33951 -4.38180 0.29689 0.84502 1.14322 2.38021 2.47103 2.60121 2.77732 2.93945 3.07039 3.10314 3.18324 3.21205 3.49581 3.66976 3.93296 4.11703 4.13850 4.40514 4.60464 4.75176 4.79238 4.93743 5.02194 5.15761 5.23482 5.28864 5.38964 5.67880 5.76487 5.79271 5.83930 5.99251 6.04040 6.10434 6.15538 6.31730 6.44749 6.56814 6.69975 6.79146 7.11887 7.31525 7.49076 8.01330 8.04125 8.19798 8.75621 9.18738 10.78380 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.007685 B = 0.004228 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3642.531739 B = 6621.084535 C = 9528.346906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.271 3.729 3 C -0.169 4.169 4 C 0.162 3.838 5 C -0.289 4.289 6 C 0.158 3.842 7 N -0.301 5.301 8 C 0.223 3.777 9 C -0.537 4.537 10 H 0.089 0.911 11 C 0.080 3.920 12 N -0.882 5.882 13 Si 0.872 3.128 14 H -0.271 1.271 15 H -0.266 1.266 16 H -0.279 1.279 17 N -0.250 5.250 18 C 0.130 3.870 19 C -0.011 4.011 20 C -0.070 4.070 21 C -0.153 4.153 22 C 0.099 3.901 23 F -0.142 7.142 24 C -0.153 4.153 25 C -0.060 4.060 26 C 0.529 3.471 27 O -0.484 6.484 28 O -0.521 6.521 29 H 0.145 0.855 30 H 0.174 0.826 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.270 0.730 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.393 -3.091 -7.733 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.043 4.043 3 C -0.176 4.176 4 C 0.138 3.862 5 C -0.301 4.301 6 C 0.003 3.997 7 N -0.074 5.074 8 C 0.105 3.895 9 C -0.575 4.575 10 H 0.107 0.893 11 C -0.125 4.125 12 N -0.518 5.518 13 Si 0.698 3.302 14 H -0.196 1.196 15 H -0.190 1.190 16 H -0.204 1.204 17 N -0.069 5.069 18 C -0.037 4.037 19 C -0.013 4.013 20 C -0.090 4.090 21 C -0.172 4.172 22 C 0.079 3.921 23 F -0.120 7.120 24 C -0.171 4.171 25 C -0.079 4.079 26 C 0.372 3.628 27 O -0.371 6.371 28 O -0.333 6.333 29 H 0.163 0.837 30 H 0.191 0.809 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.357 -3.054 -8.114 15.924 hybrid contribution 0.234 0.860 0.859 1.238 sum -13.123 -2.194 -7.255 15.155 Atomic orbital electron populations 1.81216 1.11890 1.10683 1.07116 1.25233 0.92067 0.93123 0.93840 1.16982 0.84544 1.24267 0.91793 1.21244 0.91636 0.78743 0.94589 1.18763 0.92916 1.03479 1.14942 1.22968 0.84792 0.98688 0.93252 1.48776 1.05856 1.18350 1.34384 1.20292 0.85610 0.87887 0.95736 1.20991 1.03995 0.96976 1.35549 0.89341 1.24801 0.95106 0.98225 0.94343 1.69863 1.10758 1.36135 1.35087 0.86935 0.79046 0.85468 0.78739 1.19588 1.19031 1.20436 1.77422 1.20286 0.97345 1.11838 1.21685 0.90096 0.94935 0.97013 1.17795 0.96911 0.92060 0.94557 1.21053 0.96663 0.92391 0.98856 1.21018 1.01464 0.99318 0.95350 1.17822 0.97828 0.84254 0.92206 1.91493 1.94318 1.49634 1.76600 1.21081 0.98920 0.94875 1.02260 1.21162 0.97573 0.96149 0.92995 1.20167 0.85469 0.73609 0.83556 1.91152 1.13899 1.45311 1.86709 1.84611 1.45845 1.84653 1.18209 0.83746 0.80908 0.92675 0.93784 0.92004 0.84648 0.84419 0.84429 0.84135 0.72767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.07 18.54 41.84 0.78 -5.30 16 2 C 0.27 3.29 14.99 -22.47 -0.34 2.96 16 3 C -0.17 -1.89 5.84 -104.55 -0.61 -2.50 16 4 C 0.16 1.68 7.91 -38.26 -0.30 1.38 16 5 C -0.29 -4.01 4.59 -104.84 -0.48 -4.49 16 6 C 0.16 2.46 8.40 -16.41 -0.14 2.32 16 7 N -0.30 -5.81 3.62 -61.86 -0.22 -6.03 16 8 C 0.22 4.72 5.27 -5.19 -0.03 4.69 16 9 C -0.54 -14.16 9.76 -34.44 -0.34 -14.50 16 10 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 11 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 12 N -0.88 -25.38 13.96 55.43 0.77 -24.61 16 13 Si 0.87 18.92 27.47 -169.99 -4.67 14.25 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.27 -5.27 6.54 56.52 0.37 -4.90 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 N -0.25 -4.89 12.25 34.62 0.42 -4.46 16 18 C 0.13 2.06 6.94 -80.47 -0.56 1.50 16 19 C -0.01 -0.15 5.83 -104.91 -0.61 -0.76 16 20 C -0.07 -0.78 9.17 -39.24 -0.36 -1.14 16 21 C -0.15 -1.55 10.01 -39.56 -0.40 -1.95 16 22 C 0.10 1.08 7.30 -39.34 -0.29 0.79 16 23 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 24 C -0.15 -1.63 10.01 -39.56 -0.40 -2.03 16 25 C -0.06 -0.72 9.76 -39.24 -0.38 -1.10 16 26 C 0.53 6.71 7.81 34.20 0.27 6.98 16 27 O -0.48 -7.80 13.39 -19.34 -0.26 -8.06 16 28 O -0.52 -5.59 12.98 -40.90 -0.53 -6.12 16 29 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.17 2.21 7.88 -52.49 -0.41 1.79 16 31 H 0.06 1.07 7.10 -51.93 -0.37 0.71 16 32 H 0.04 0.90 7.57 -51.93 -0.39 0.51 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.14 1.35 6.89 -52.49 -0.36 0.99 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.41 2.83 9.11 45.56 0.42 3.24 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -32.87 356.44 -5.76 -38.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.40 Total: 3.72 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -5.06 Total: -5.82 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 1.75 Total: -40.40 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.79 Total: -14.19 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.67 Total: 14.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.87 -5.76 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003887877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.449 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds