Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21292 * 120.00240 * 2 1 4 4 N 1.34777 * 120.00215 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00040 * 6.35899 * 4 2 1 6 6 C 1.50700 * 109.47512 * 251.67803 * 5 4 2 7 7 C 1.37634 * 120.12970 * 268.44266 * 6 5 4 8 8 C 1.38615 * 120.25069 * 179.97438 * 7 6 5 9 9 C 1.38651 * 120.50196 * 0.02562 * 8 7 6 10 10 C 1.37603 * 120.24943 * 0.02562 * 9 8 7 11 11 C 1.40700 * 120.12793 * 88.15747 * 6 5 4 12 12 C 1.41397 * 120.24301 * 0.02562 * 11 6 5 13 13 H 1.08002 * 120.00375 * 54.79521 * 12 11 6 14 14 C 1.39951 * 119.99774 * 234.79929 * 12 11 6 15 15 N 1.30818 * 120.00029 * 12.78517 * 14 12 11 16 16 Si 1.86801 * 119.99831 * 192.78758 * 14 12 11 17 17 H 1.48492 * 109.47110 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46756 * 120.00067 * 16 14 12 19 19 H 1.48500 * 109.47234 * 239.99691 * 16 14 12 20 20 C 1.39933 * 119.99920 * 186.35745 * 4 2 1 21 21 C 1.38866 * 120.07230 * 43.79558 * 20 4 2 22 22 C 1.38106 * 119.93151 * 179.97438 * 21 20 4 23 23 C 1.38289 * 120.07026 * 359.97438 * 22 21 20 24 24 N 1.48019 * 119.93077 * 180.02562 * 23 22 21 25 25 O 1.21792 * 120.00012 * 359.97438 * 24 23 22 26 26 O 1.21798 * 119.99651 * 179.72345 * 24 23 22 27 27 C 1.38281 * 120.13624 * 0.26862 * 23 22 21 28 28 C 1.38109 * 120.07304 * 359.46150 * 27 23 22 29 29 H 1.08999 * 109.46608 * 173.01836 * 1 2 3 30 30 H 1.08997 * 109.47008 * 293.02068 * 1 2 3 31 31 H 1.09003 * 109.46865 * 53.02372 * 1 2 3 32 32 H 1.08997 * 109.47273 * 11.67658 * 5 4 2 33 33 H 1.09001 * 109.47686 * 131.67505 * 5 4 2 34 34 H 1.08003 * 119.87133 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.74680 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.87806 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.13348 * 179.97438 * 10 9 8 38 38 H 0.96998 * 120.00537 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.03579 * 359.95100 * 21 20 4 40 40 H 1.07995 * 119.96804 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.96113 * 179.72678 * 27 23 22 42 42 H 1.08004 * 120.03789 * 180.24719 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4552 -2.4320 -0.1394 6 6 1.4626 -3.1639 1.1779 7 6 2.4601 -4.0695 1.4596 8 6 2.4696 -4.7437 2.6707 9 6 1.4767 -4.5153 3.6110 10 6 0.4690 -3.6152 3.3505 11 6 0.4531 -2.9198 2.1271 12 6 -0.5737 -1.9877 1.8510 13 1 -1.1697 -2.0901 0.9562 14 6 -0.8175 -0.9324 2.7373 15 7 0.0472 -0.6562 3.6792 16 14 -2.3779 0.0818 2.5751 17 1 -3.1845 -0.4293 1.4379 18 1 -3.1676 -0.0212 3.8286 19 1 -2.0217 1.5024 2.3298 20 6 3.5738 -1.1708 0.1347 21 6 4.1843 -0.3521 1.0757 22 6 5.5592 -0.3584 1.2060 23 6 6.3278 -1.1791 0.4011 24 7 7.8011 -1.1838 0.5438 25 8 8.3352 -0.4649 1.3691 26 8 8.4788 -1.9099 -0.1611 27 6 5.7232 -1.9918 -0.5403 28 6 4.3484 -1.9943 -0.6718 29 1 -0.3632 -1.0201 -0.1249 30 1 -0.3633 0.4019 0.9458 31 1 -0.3633 0.6182 -0.8210 32 1 0.4263 -2.2297 -0.4368 33 1 1.9388 -3.0463 -0.8990 34 1 3.2384 -4.2554 0.7342 35 1 3.2560 -5.4528 2.8830 36 1 1.4941 -5.0459 4.5515 37 1 -0.3037 -3.4392 4.0841 38 1 -0.1219 0.0750 4.2938 39 1 3.5846 0.2891 1.7047 40 1 6.0346 0.2783 1.9373 41 1 6.3265 -2.6284 -1.1706 42 1 3.8765 -2.6322 -1.4045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004160045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = 24.309083 kcal Electronic energy + Delta-G solvation = -29954.582454 eV Core-core repulsion = 25868.317047 eV Total energy + Delta-G solvation = -4086.265407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00164 -40.64700 -38.48987 -37.98469 -36.39725 -35.42816 -33.88357 -31.86709 -31.32858 -30.38459 -29.95091 -29.08957 -26.49010 -25.52296 -24.97433 -23.06754 -22.33835 -21.32198 -20.32567 -19.51162 -19.16642 -18.49820 -17.52543 -17.36028 -17.25631 -16.44210 -15.85414 -15.37519 -14.94777 -14.88642 -14.48286 -14.07585 -13.93487 -13.82518 -13.67842 -13.15952 -12.91678 -12.81967 -12.46236 -12.37875 -12.08005 -11.84646 -11.59818 -11.49372 -11.39001 -11.27865 -11.03078 -11.00295 -10.94066 -10.73204 -10.64973 -10.23237 -9.87747 -9.66331 -9.58543 -9.26802 -9.21764 -8.20043 -7.82093 -7.40436 -6.83900 -4.65755 0.01109 1.09927 1.49694 1.60636 2.30046 2.58038 2.84381 2.94186 2.98062 2.99788 3.20709 3.50483 3.80083 4.47420 4.49677 4.58622 4.91761 4.94284 5.06334 5.16252 5.29653 5.33194 5.60378 5.62599 5.71394 5.76659 5.82921 5.86743 5.88653 6.01172 6.06803 6.23420 6.26077 6.33804 6.52157 6.58245 6.68646 6.82256 6.89876 7.07738 7.21032 7.39998 7.49870 7.58028 7.77823 7.82542 7.91991 8.22162 8.35488 8.61030 8.70804 10.18029 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.004259 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.082918 B = 6572.554713 C = 7479.947549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.536 3.464 3 O -0.544 6.544 4 N -0.553 5.553 5 C 0.162 3.838 6 C -0.198 4.198 7 C -0.086 4.086 8 C -0.209 4.209 9 C -0.103 4.103 10 C -0.145 4.145 11 C 0.155 3.845 12 C -0.516 4.516 13 H 0.085 0.915 14 C 0.087 3.913 15 N -0.812 5.812 16 Si 0.879 3.121 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.272 1.272 20 C 0.238 3.762 21 C -0.113 4.113 22 C -0.034 4.034 23 C -0.074 4.074 24 N 0.039 4.961 25 O -0.174 6.174 26 O -0.176 6.176 27 C -0.035 4.035 28 C -0.149 4.149 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.279 0.721 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -2.465 -6.852 7.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.328 3.672 3 O -0.421 6.421 4 N -0.277 5.277 5 C 0.043 3.957 6 C -0.200 4.200 7 C -0.105 4.105 8 C -0.227 4.227 9 C -0.122 4.122 10 C -0.164 4.164 11 C 0.153 3.847 12 C -0.548 4.548 13 H 0.102 0.898 14 C -0.128 4.128 15 N -0.439 5.439 16 Si 0.704 3.296 17 H -0.180 1.180 18 H -0.200 1.200 19 H -0.198 1.198 20 C 0.142 3.858 21 C -0.133 4.133 22 C -0.054 4.054 23 C -0.159 4.159 24 N 0.555 4.445 25 O -0.387 6.387 26 O -0.389 6.389 27 C -0.055 4.055 28 C -0.169 4.169 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.978 -1.717 -6.766 7.049 hybrid contribution -0.329 0.451 0.521 0.763 sum 0.649 -1.267 -6.245 6.405 Atomic orbital electron populations 1.22561 0.90335 1.06555 1.04457 1.21079 0.91246 0.81902 0.72928 1.90680 1.71021 1.31180 1.49214 1.46119 1.03142 1.08755 1.69646 1.20616 0.97562 0.81854 0.95671 1.20111 0.98167 1.03132 0.98607 1.20522 0.96857 0.96856 0.96267 1.20548 1.01159 1.05154 0.95883 1.20825 0.95299 0.98608 0.97470 1.21416 0.98857 0.96885 0.99236 1.17352 0.89864 0.88089 0.89435 1.19194 1.17113 1.10048 1.08469 0.89776 1.25536 0.95927 0.97389 0.93915 1.69720 1.32836 1.26549 1.14818 0.86804 0.82937 0.80091 0.79770 1.18031 1.19964 1.19759 1.18099 0.84411 0.92770 0.90520 1.21174 0.93192 1.01224 0.97744 1.20840 0.93162 0.95071 0.96355 1.20957 0.78862 1.08793 1.07242 1.43588 1.03776 0.98438 0.98700 1.94514 1.74849 1.38859 1.30523 1.94491 1.63302 1.38179 1.42943 1.20717 0.94665 0.95308 0.94826 1.20941 0.91936 1.03155 1.00915 0.87022 0.87782 0.90533 0.87471 0.91454 0.89069 0.88874 0.88890 0.88082 0.91071 0.83234 0.83102 0.83061 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.06 36.00 0.29 -2.69 16 2 C 0.54 9.83 7.45 -10.99 -0.08 9.75 16 3 O -0.54 -11.34 15.59 5.55 0.09 -11.25 16 4 N -0.55 -9.25 2.71 -114.74 -0.31 -9.56 16 5 C 0.16 2.50 5.13 -5.20 -0.03 2.47 16 6 C -0.20 -3.71 5.27 -103.91 -0.55 -4.26 16 7 C -0.09 -1.57 9.61 -39.66 -0.38 -1.95 16 8 C -0.21 -3.94 10.05 -39.29 -0.39 -4.34 16 9 C -0.10 -2.06 10.02 -39.66 -0.40 -2.46 16 10 C -0.14 -3.15 9.05 -38.87 -0.35 -3.51 16 11 C 0.15 3.29 5.10 -106.82 -0.54 2.74 16 12 C -0.52 -10.75 5.44 -37.74 -0.21 -10.95 16 13 H 0.08 1.63 6.16 -52.49 -0.32 1.30 16 14 C 0.09 1.88 3.99 -17.34 -0.07 1.81 16 15 N -0.81 -19.11 12.82 55.55 0.71 -18.40 16 16 Si 0.88 16.58 27.27 -169.99 -4.64 11.94 16 17 H -0.26 -4.59 7.11 56.52 0.40 -4.18 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 C 0.24 3.87 5.30 -83.69 -0.44 3.42 16 21 C -0.11 -1.92 8.69 -39.40 -0.34 -2.26 16 22 C -0.03 -0.53 9.55 -39.61 -0.38 -0.91 16 23 C -0.07 -1.12 6.85 -79.91 -0.55 -1.67 16 24 N 0.04 0.64 4.45 33.98 0.15 0.79 16 25 O -0.17 -2.94 18.44 -29.46 -0.54 -3.48 16 26 O -0.18 -2.85 18.44 -29.46 -0.54 -3.40 16 27 C -0.04 -0.46 9.55 -39.61 -0.38 -0.84 16 28 C -0.15 -1.97 9.36 -39.39 -0.37 -2.34 16 29 H 0.11 1.72 2.79 -51.93 -0.14 1.58 16 30 H 0.10 1.94 3.96 -51.93 -0.21 1.73 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.11 1.55 4.52 -51.93 -0.23 1.32 16 33 H 0.07 0.84 6.82 -51.93 -0.35 0.48 16 34 H 0.09 1.45 7.99 -52.48 -0.42 1.03 16 35 H 0.09 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 39 H 0.15 2.82 7.23 -52.49 -0.38 2.44 16 40 H 0.15 2.11 7.60 -52.49 -0.40 1.71 16 41 H 0.15 1.64 7.60 -52.48 -0.40 1.24 16 42 H 0.15 1.54 7.01 -52.48 -0.37 1.17 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -26.13 351.80 -9.00 -35.14 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -4.05 Total: 10.89 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -5.17 Total: -17.96 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.55 Total: -27.17 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.00 Total: -18.14 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -4.64 Total: 11.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.13 -9.00 -35.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004160045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.447 kcal (2) G-P(sol) polarization free energy of solvation -26.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds