Wall clock time and date at job start Tue Mar 31 2020 05:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46809 * 2 1 4 4 C 1.35968 * 116.99926 * 180.02562 * 3 2 1 5 5 C 1.38725 * 119.98910 * 180.02562 * 4 3 2 6 6 C 1.38085 * 120.01653 * 179.97438 * 5 4 3 7 7 C 1.38842 * 119.98156 * 359.97438 * 6 5 4 8 8 N 1.40246 * 120.00924 * 179.97438 * 7 6 5 9 9 C 1.38515 * 126.41475 * 114.99845 * 8 7 6 10 10 C 1.38674 * 133.88410 * 359.76064 * 9 8 7 11 11 C 1.37954 * 119.85657 * 179.97438 * 10 9 8 12 12 C 1.38759 * 120.45341 * 359.97438 * 11 10 9 13 13 C 1.37639 * 120.51687 * 0.02562 * 12 11 10 14 14 C 1.39833 * 119.77447 * 0.02562 * 13 12 11 15 15 N 1.35677 * 133.35228 * 180.02562 * 14 13 12 16 16 C 1.31102 * 109.67334 * 179.97438 * 15 14 13 17 17 S 1.76202 * 125.10187 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99956 * 359.97072 * 17 16 15 19 19 H 1.07992 * 120.00104 * 359.97438 * 18 17 16 20 20 C 1.38740 * 119.99529 * 180.02562 * 18 17 16 21 21 N 1.31580 * 120.00660 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47000 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47356 * 119.99604 * 22 20 18 25 25 H 1.48503 * 109.47152 * 239.99971 * 22 20 18 26 26 C 1.38835 * 119.97552 * 0.24751 * 7 6 5 27 27 C 1.38080 * 119.98874 * 359.51933 * 26 7 6 28 28 H 1.08997 * 109.47158 * 60.00206 * 1 2 3 29 29 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47140 * 300.00158 * 1 2 3 31 31 H 1.09003 * 109.47474 * 240.00160 * 2 1 3 32 32 H 1.08997 * 109.47158 * 119.99794 * 2 1 3 33 33 H 1.08003 * 119.98989 * 359.97438 * 5 4 3 34 34 H 1.07998 * 120.01122 * 180.02562 * 6 5 4 35 35 H 1.08005 * 120.07339 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.77596 * 179.97438 * 11 10 9 37 37 H 1.07994 * 119.74384 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.11094 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00196 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.00581 * 179.72497 * 26 7 6 41 41 H 1.07999 * 119.99222 * 180.23289 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 3.8841 2.8076 0.0000 6 6 5.2530 2.9892 -0.0001 7 6 6.0990 1.8883 0.0000 8 7 7.4893 2.0721 -0.0006 9 6 8.3666 1.7132 1.0095 10 6 8.2106 1.1140 2.2503 11 6 9.3142 0.8838 3.0454 12 6 10.5813 1.2473 2.6122 13 6 10.7557 1.8431 1.3837 14 6 9.6478 2.0847 0.5655 15 7 9.5011 2.6396 -0.6638 16 6 8.2342 2.6363 -1.0013 17 16 7.5878 3.2606 -2.5169 18 6 9.0774 3.8074 -3.2828 19 1 10.0217 3.6900 -2.7721 20 6 9.0370 4.3897 -4.5414 21 7 7.8864 4.5332 -5.1634 22 14 10.6163 4.9688 -5.3538 23 1 11.7652 4.6948 -4.4536 24 1 10.8079 4.2446 -6.6360 25 1 10.5314 6.4278 -5.6171 26 6 5.5680 0.6055 -0.0052 27 6 4.1991 0.4251 -0.0003 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2259 3.6638 0.0004 34 1 5.6654 3.9873 0.0008 35 1 7.2272 0.8282 2.5935 36 1 9.1912 0.4175 4.0117 37 1 11.4372 1.0622 3.2441 38 1 11.7449 2.1230 1.0528 39 1 7.8583 4.9400 -6.0436 40 1 6.2256 -0.2512 -0.0097 41 1 3.7860 -0.5728 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004253656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:48 Heat of formation + Delta-G solvation = 57.477800 kcal Electronic energy + Delta-G solvation = -25668.952873 eV Core-core repulsion = 22026.878640 eV Total energy + Delta-G solvation = -3642.074233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55316 -40.12310 -37.83825 -36.55569 -33.52323 -32.68098 -31.91755 -31.09029 -30.08949 -28.82668 -27.99719 -25.70557 -24.32111 -23.08091 -22.86481 -21.99166 -21.42299 -20.21888 -18.46646 -18.20406 -17.46420 -16.46160 -16.30811 -16.16199 -15.68034 -14.95176 -14.82218 -14.62781 -14.20598 -13.97465 -13.66833 -13.64436 -13.51015 -13.40659 -12.99867 -12.95420 -12.52326 -12.18855 -11.95990 -11.70581 -11.51412 -11.27378 -11.17077 -11.08883 -11.01353 -10.95774 -10.91781 -10.18765 -10.04045 -9.38258 -9.29677 -9.09536 -8.89885 -8.34753 -8.25421 -7.63465 -6.70579 -6.49096 -4.22344 1.15053 1.26594 1.42033 1.94329 2.47131 2.99462 3.14766 3.22432 3.30221 3.30878 3.34404 3.63774 3.99928 4.35348 4.60967 4.64497 4.74758 4.77774 4.85579 4.95508 4.96302 5.12796 5.12884 5.25768 5.28823 5.33264 5.39711 5.49580 5.56263 5.70554 5.73785 5.82789 5.87115 5.93745 5.97316 6.17602 6.19742 6.37617 6.53877 6.57419 6.86108 6.87824 7.02732 7.23634 7.34527 7.56351 7.69688 8.37702 8.54685 9.03487 10.59059 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008357 B = 0.004132 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3349.640629 B = 6774.798916 C = 9801.489991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.134 3.866 5 C -0.136 4.136 6 C -0.060 4.060 7 C 0.100 3.900 8 N -0.450 5.450 9 C 0.039 3.961 10 C -0.103 4.103 11 C -0.130 4.130 12 C -0.129 4.129 13 C -0.084 4.084 14 C 0.075 3.925 15 N -0.505 5.505 16 C 0.272 3.728 17 S 0.147 5.853 18 C -0.534 4.534 19 H 0.109 0.891 20 C 0.075 3.925 21 N -0.876 5.876 22 Si 0.932 3.068 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.278 1.278 26 C -0.068 4.068 27 C -0.198 4.198 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.274 0.726 40 H 0.129 0.871 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 -9.005 12.827 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.088 3.912 5 C -0.155 4.155 6 C -0.079 4.079 7 C 0.009 3.991 8 N -0.142 5.142 9 C -0.069 4.069 10 C -0.125 4.125 11 C -0.151 4.151 12 C -0.149 4.149 13 C -0.106 4.106 14 C -0.047 4.047 15 N -0.230 5.230 16 C -0.096 4.096 17 S 0.384 5.616 18 C -0.683 4.683 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.511 5.511 22 Si 0.757 3.243 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.203 1.203 26 C -0.088 4.088 27 C -0.218 4.218 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.136 -8.391 11.617 18.149 hybrid contribution 1.561 -0.298 0.327 1.623 sum -9.574 -8.689 11.944 17.602 Atomic orbital electron populations 1.21773 0.92739 1.02806 1.03585 1.22803 0.95888 0.82044 1.01536 1.86089 1.18891 1.29270 1.88561 1.18997 0.82234 0.94042 0.95907 1.20269 0.94260 0.95131 1.05879 1.21084 0.92062 0.98964 0.95832 1.17421 0.80942 0.93655 1.07103 1.42558 1.03807 1.52854 1.14940 1.18936 0.90535 1.05236 0.92218 1.19813 0.98996 1.01954 0.91706 1.20639 0.92003 1.03061 0.99400 1.20725 0.97011 1.01154 0.96024 1.20184 0.96704 1.00414 0.93262 1.19324 0.92166 1.00076 0.93116 1.71165 1.14281 1.25341 1.12168 1.27365 0.88549 0.96581 0.97076 1.83685 1.12403 1.66093 0.99368 1.23357 0.94630 1.45482 1.04802 0.87356 1.25101 0.98205 0.94354 0.95731 1.69939 1.24845 1.41438 1.14874 0.85885 0.81372 0.78249 0.78811 1.18847 1.20363 1.20346 1.20954 0.94726 0.96037 0.97048 1.21032 0.93226 0.98296 1.09210 0.91399 0.90421 0.91550 0.91814 0.92021 0.84280 0.84279 0.86957 0.86184 0.86145 0.85906 0.91632 0.85309 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.43 5.46 37.16 0.20 0.64 16 3 O -0.31 -3.70 10.14 -19.64 -0.20 -3.90 16 4 C 0.13 1.74 6.69 -39.22 -0.26 1.48 16 5 C -0.14 -1.87 9.98 -39.46 -0.39 -2.27 16 6 C -0.06 -0.95 9.69 -39.41 -0.38 -1.33 16 7 C 0.10 1.72 5.42 -83.56 -0.45 1.27 16 8 N -0.45 -9.12 2.86 -58.34 -0.17 -9.29 16 9 C 0.04 0.76 6.79 -83.80 -0.57 0.19 16 10 C -0.10 -1.63 10.02 -39.52 -0.40 -2.03 16 11 C -0.13 -1.80 10.03 -39.49 -0.40 -2.19 16 12 C -0.13 -1.84 10.01 -39.61 -0.40 -2.24 16 13 C -0.08 -1.48 10.10 -39.20 -0.40 -1.88 16 14 C 0.07 1.60 7.22 -84.68 -0.61 0.99 16 15 N -0.50 -12.46 9.96 -10.81 -0.11 -12.57 16 16 C 0.27 6.44 7.85 -88.14 -0.69 5.75 16 17 S 0.15 3.73 21.24 -107.50 -2.28 1.44 16 18 C -0.53 -14.98 9.35 30.92 0.29 -14.69 16 19 H 0.11 3.13 6.85 -52.49 -0.36 2.77 16 20 C 0.08 2.05 5.49 -17.47 -0.10 1.96 16 21 N -0.88 -24.46 13.22 55.49 0.73 -23.73 16 22 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.07 -1.00 9.92 -39.42 -0.39 -1.39 16 27 C -0.20 -2.47 9.03 -39.46 -0.36 -2.83 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 32 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 33 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -31.88 369.22 -11.25 -43.13 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.85 Total: 2.29 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.92 Total: -19.15 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.46 Total: -45.59 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.20 Total: -3.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.28 Total: 1.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.88 -11.25 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004253656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.608 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds