Wall clock time and date at job start Tue Mar 31 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47521 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47104 * 299.99993 * 3 2 1 6 6 H 1.48504 * 109.47216 * 59.99850 * 3 2 1 7 7 C 1.37877 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99668 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46665 * 179.97438 * 9 7 2 11 11 C 1.34156 * 125.16316 * 125.00369 * 10 9 7 12 12 C 1.37960 * 107.88670 * 179.73277 * 11 10 9 13 13 C 1.47290 * 126.80772 * 180.24196 * 12 11 10 14 14 O 1.21617 * 120.00282 * 127.56998 * 13 12 11 15 15 N 1.34775 * 120.00200 * 307.56663 * 13 12 11 16 16 C 1.47156 * 120.97969 * 4.09384 * 15 13 12 17 17 C 1.53720 * 108.15957 * 129.43225 * 16 15 13 18 18 O 1.42958 * 109.14612 * 52.53607 * 17 16 15 19 19 C 1.42955 * 114.17153 * 297.28799 * 18 17 16 20 20 C 1.47147 * 120.98482 * 184.37465 * 15 13 12 21 21 C 1.46591 * 106.38490 * 0.36588 * 12 11 10 22 22 C 1.48297 * 126.51551 * 179.89131 * 21 12 11 23 23 C 1.39375 * 120.12544 * 144.71054 * 22 21 12 24 24 C 1.38007 * 119.87460 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12215 * 0.02562 * 24 23 22 26 26 C 1.38325 * 120.25274 * 359.97438 * 25 24 23 27 27 C 1.38007 * 120.12524 * 359.97438 * 26 25 24 28 28 N 1.31372 * 106.97631 * 359.63187 * 21 12 11 29 29 H 0.97003 * 119.99669 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47509 * 59.99989 * 9 7 2 31 31 H 1.08995 * 109.47598 * 299.99571 * 9 7 2 32 32 H 1.08004 * 126.05369 * 359.97035 * 11 10 9 33 33 H 1.08998 * 109.68534 * 249.21026 * 16 15 13 34 34 H 1.08996 * 109.68031 * 9.76885 * 16 15 13 35 35 H 1.08999 * 109.65527 * 292.57268 * 17 16 15 36 36 H 1.09003 * 109.48644 * 172.40033 * 17 16 15 37 37 H 1.09001 * 109.51584 * 302.66004 * 19 18 17 38 38 H 1.08995 * 109.55674 * 182.52821 * 19 18 17 39 39 H 1.09004 * 109.68249 * 350.24026 * 20 15 13 40 40 H 1.09005 * 109.68352 * 110.75483 * 20 15 13 41 41 H 1.08002 * 120.06236 * 0.25874 * 23 22 21 42 42 H 1.07998 * 119.94431 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.86810 * 179.97438 * 25 24 23 44 44 H 1.07996 * 119.93597 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.06379 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.2269 -4.6087 0.8989 12 6 3.2578 -5.4605 0.5598 13 6 3.6518 -6.6931 1.2634 14 8 3.7633 -7.7358 0.6474 15 7 3.8888 -6.6655 2.5898 16 6 3.6745 -5.4377 3.3722 17 6 2.8099 -5.7922 4.5928 18 8 3.4063 -6.8906 5.2867 19 6 3.4819 -8.0952 4.5207 20 6 4.3754 -7.8603 3.2974 21 6 3.8853 -4.8941 -0.6379 22 6 5.0427 -5.4544 -1.3766 23 6 5.1098 -5.3382 -2.7638 24 6 6.1896 -5.8610 -3.4460 25 6 7.2038 -6.5000 -2.7555 26 6 7.1424 -6.6183 -1.3787 27 6 6.0679 -6.0983 -0.6860 28 7 3.2239 -3.7988 -0.9358 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.5554 -4.7253 1.7367 33 1 4.6343 -5.0400 3.7017 34 1 3.1605 -4.6971 2.7595 35 1 1.8083 -6.0696 4.2645 36 1 2.7495 -4.9308 5.2581 37 1 2.4827 -8.3811 4.1921 38 1 3.9053 -8.8911 5.1333 39 1 4.3260 -8.7247 2.6352 40 1 5.4049 -7.7027 3.6190 41 1 4.3206 -4.8358 -3.3035 42 1 6.2429 -5.7712 -4.5209 43 1 8.0467 -6.9080 -3.2935 44 1 7.9368 -7.1185 -0.8448 45 1 6.0208 -6.1916 0.3890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004510908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:52 Heat of formation + Delta-G solvation = 27.984169 kcal Electronic energy + Delta-G solvation = -29606.115799 eV Core-core repulsion = 25590.416939 eV Total energy + Delta-G solvation = -4015.698860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89800 -39.74514 -38.66380 -37.99268 -34.69262 -33.94301 -32.42814 -31.84873 -30.80414 -30.33748 -29.76405 -27.99000 -26.93003 -24.31182 -23.81442 -23.30723 -22.39458 -21.92923 -20.82998 -19.79952 -19.01743 -17.33448 -16.88477 -16.64715 -16.43934 -16.07092 -15.67027 -15.35500 -15.23741 -14.99866 -14.81853 -14.54831 -14.36175 -14.15726 -13.77033 -13.45166 -13.21521 -13.09587 -12.72929 -12.64720 -12.34922 -12.32033 -11.91320 -11.81972 -11.57200 -11.16202 -11.09224 -10.99925 -10.94668 -10.85847 -10.40360 -10.39493 -10.26072 -9.92330 -9.65161 -9.23435 -8.76501 -8.75939 -8.61031 -8.35902 -7.80160 -6.38482 -4.44560 1.27487 1.59770 2.12078 2.73063 2.85765 3.14595 3.18291 3.23335 3.30611 3.34083 3.64269 4.09078 4.20472 4.55210 4.61249 4.78470 4.84707 4.92435 4.98602 5.02479 5.08218 5.09345 5.15239 5.22503 5.32110 5.37358 5.44941 5.53468 5.61464 5.62650 5.67174 5.75681 5.82425 5.91739 6.09495 6.20401 6.38260 6.47786 6.60241 6.63882 6.77849 6.82603 6.88852 6.99823 7.13919 7.39678 7.48195 7.67526 7.69020 8.25632 8.35628 8.63379 9.22520 10.70514 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007502 B = 0.004437 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3731.473917 B = 6308.364373 C = 9233.313176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.071 0.929 9 C 0.250 3.750 10 N -0.309 5.309 11 C 0.087 3.913 12 C -0.304 4.304 13 C 0.608 3.392 14 O -0.536 6.536 15 N -0.618 5.618 16 C 0.066 3.934 17 C 0.047 3.953 18 O -0.381 6.381 19 C 0.048 3.952 20 C 0.079 3.921 21 C 0.125 3.875 22 C 0.004 3.996 23 C -0.091 4.091 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.085 4.085 28 N -0.254 5.254 29 H 0.268 0.732 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.176 0.824 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 -13.521 5.688 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.133 3.867 10 N -0.086 5.086 11 C -0.065 4.065 12 C -0.320 4.320 13 C 0.398 3.602 14 O -0.413 6.413 15 N -0.354 5.354 16 C -0.057 4.057 17 C -0.030 4.030 18 O -0.299 6.299 19 C -0.029 4.029 20 C -0.044 4.044 21 C -0.041 4.041 22 C 0.002 3.998 23 C -0.110 4.110 24 C -0.142 4.142 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.104 4.104 28 N -0.075 5.075 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.193 0.807 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.305 -12.780 4.721 15.956 hybrid contribution 0.112 0.407 0.448 0.615 sum 8.416 -12.374 5.169 15.832 Atomic orbital electron populations 1.69920 1.06081 1.27791 1.49234 1.24929 0.94978 0.99624 0.94286 0.86264 0.80116 0.82272 0.77861 1.19436 1.20574 1.20658 1.21222 0.94049 0.89023 1.52798 0.91051 1.19946 0.85675 0.81259 0.99790 1.49222 1.23035 1.18933 1.17390 1.22754 0.98885 0.89074 0.95810 1.20787 1.06203 1.01823 1.03222 1.17363 0.75300 0.87319 0.80209 1.90746 1.52498 1.32024 1.66009 1.48040 1.67637 1.12047 1.07627 1.22691 1.01620 0.87757 0.93629 1.23101 0.95505 0.90342 0.94093 1.87948 1.82095 1.19919 1.39988 1.22977 0.99539 0.87575 0.92851 1.22232 0.98028 0.89748 0.94383 1.21615 0.95985 0.93152 0.93329 1.17721 0.91605 0.98026 0.92424 1.21247 0.98371 0.98332 0.93068 1.21038 0.94267 0.99045 0.99808 1.21143 0.98743 0.99614 0.94342 1.20956 0.98184 1.00493 0.94410 1.21006 0.93110 0.96760 0.99554 1.77441 1.00625 1.16422 1.13048 0.92193 0.93131 0.92328 0.80736 0.90551 0.87610 0.92477 0.87420 0.92626 0.87823 0.88078 0.90882 0.85447 0.85936 0.86264 0.86131 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.29 55.43 0.74 -23.23 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -13.83 9.21 -34.44 -0.32 -14.14 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.25 5.82 6.21 -5.19 -0.03 5.79 16 10 N -0.31 -6.50 3.62 -62.03 -0.22 -6.72 16 11 C 0.09 1.52 9.14 -16.64 -0.15 1.37 16 12 C -0.30 -5.46 5.36 -102.95 -0.55 -6.02 16 13 C 0.61 10.08 5.89 -12.58 -0.07 10.01 16 14 O -0.54 -10.25 16.24 5.26 0.09 -10.16 16 15 N -0.62 -8.17 3.01 -173.33 -0.52 -8.69 16 16 C 0.07 0.77 6.49 -3.31 -0.02 0.74 16 17 C 0.05 0.47 7.00 37.53 0.26 0.73 16 18 O -0.38 -4.17 10.74 -35.23 -0.38 -4.55 16 19 C 0.05 0.45 6.99 37.31 0.26 0.71 16 20 C 0.08 0.85 6.65 -3.54 -0.02 0.83 16 21 C 0.13 2.47 6.94 -80.56 -0.56 1.92 16 22 C 0.00 0.07 5.84 -104.91 -0.61 -0.54 16 23 C -0.09 -1.47 9.76 -39.24 -0.38 -1.85 16 24 C -0.12 -1.64 10.03 -39.63 -0.40 -2.04 16 25 C -0.12 -1.48 10.04 -39.51 -0.40 -1.87 16 26 C -0.12 -1.62 10.03 -39.63 -0.40 -2.02 16 27 C -0.08 -1.34 8.89 -39.24 -0.35 -1.69 16 28 N -0.25 -5.57 12.28 34.58 0.42 -5.15 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 32 H 0.18 2.37 7.51 -52.48 -0.39 1.98 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 1.32 4.19 -51.93 -0.22 1.11 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.16 7.06 -51.93 -0.37 0.79 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.82 6.87 -52.48 -0.36 1.46 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -31.41 378.99 -8.98 -40.39 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.95 Total: 3.48 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.84 Total: -6.47 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.41 Total: -43.79 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.29 Total: -14.71 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.41 -8.98 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004510908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.373 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds