Wall clock time and date at job start Tue Mar 31 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 120.00431 * 2 1 4 4 H 1.48497 * 109.46896 * 240.00591 * 3 2 1 5 5 H 1.48496 * 109.46747 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47087 * 120.00488 * 3 2 1 7 7 C 1.38649 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00177 * 179.97438 * 7 2 1 9 9 O 1.34805 * 119.99524 * 0.27302 * 7 2 1 10 10 C 1.35610 * 116.99637 * 174.64983 * 9 7 2 11 11 C 1.38721 * 120.16113 * 5.57344 * 10 9 7 12 12 C 1.38116 * 120.08572 * 179.70244 * 11 10 9 13 13 C 1.38533 * 120.40163 * 0.59533 * 12 11 10 14 14 C 1.37881 * 120.31705 * 359.68355 * 13 12 11 15 15 C 1.39681 * 119.90840 * 0.02562 * 14 13 12 16 16 C 1.47305 * 120.19603 * 180.02562 * 15 14 13 17 17 N 1.29851 * 119.99831 * 179.97438 * 16 15 14 18 18 N 1.40097 * 120.00162 * 180.02562 * 17 16 15 19 19 C 1.34778 * 120.00341 * 179.97438 * 18 17 16 20 20 O 1.21311 * 119.99751 * 359.97438 * 19 18 17 21 21 C 1.50693 * 120.00059 * 179.97438 * 19 18 17 22 22 O 1.42904 * 109.47084 * 179.97438 * 21 19 18 23 23 C 1.35901 * 117.00030 * 179.97438 * 22 21 19 24 24 C 1.38727 * 120.05825 * 359.73210 * 23 22 21 25 25 C 1.38138 * 119.94581 * 179.74380 * 24 23 22 26 26 C 1.38268 * 120.05588 * 0.50363 * 25 24 23 27 27 C 1.38266 * 120.11073 * 359.77121 * 26 25 24 28 28 C 1.38149 * 120.05273 * 359.97438 * 27 26 25 29 29 H 0.96999 * 119.99747 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.95506 * 0.02562 * 11 10 9 31 31 H 1.07993 * 119.80268 * 180.29837 * 12 11 10 32 32 H 1.08003 * 119.83790 * 179.69792 * 13 12 11 33 33 H 1.08005 * 120.04611 * 179.97438 * 14 13 12 34 34 H 1.07993 * 120.00400 * 359.97438 * 16 15 14 35 35 H 0.97006 * 119.99846 * 359.97438 * 18 17 16 36 36 H 1.09002 * 109.47533 * 299.99830 * 21 19 18 37 37 H 1.09005 * 109.47429 * 60.00244 * 21 19 18 38 38 H 1.08006 * 120.02554 * 359.97438 * 24 23 22 39 39 H 1.07999 * 119.97560 * 180.27626 * 25 24 23 40 40 H 1.08003 * 119.94776 * 179.74663 * 26 25 24 41 41 H 1.07999 * 119.97453 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.02373 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6962 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3347 -2.3681 -0.0066 10 6 2.0691 -3.5025 -0.1195 11 6 3.4549 -3.4398 -0.1060 12 6 4.2013 -4.5968 -0.2149 13 6 3.5751 -5.8250 -0.3505 14 6 2.1988 -5.9060 -0.3716 15 6 1.4310 -4.7448 -0.2564 16 6 -0.0398 -4.8240 -0.2776 17 7 -0.7498 -3.7422 -0.1698 18 7 -2.1486 -3.8175 -0.1894 19 6 -2.8857 -2.6947 -0.0769 20 8 -2.3378 -1.6189 0.0418 21 6 -4.3903 -2.7758 -0.0987 22 8 -4.9399 -1.4636 0.0361 23 6 -6.2949 -1.3591 0.0349 24 6 -7.0793 -2.4955 -0.0990 25 6 -8.4564 -2.3872 -0.0946 26 6 -9.0532 -1.1464 0.0326 27 6 -8.2736 -0.0117 0.1604 28 6 -6.8960 -0.1153 0.1619 29 1 -0.4850 0.8401 0.0004 30 1 3.9505 -2.4857 -0.0051 31 1 5.2798 -4.5432 -0.1991 32 1 4.1678 -6.7235 -0.4398 33 1 1.7151 -6.8658 -0.4779 34 1 -0.5276 -5.7818 -0.3829 35 1 -2.5868 -4.6778 -0.2840 36 1 -4.7171 -3.2118 -1.0427 37 1 -4.7326 -3.3992 0.7274 38 1 -6.6137 -3.4645 -0.2028 39 1 -9.0676 -3.2721 -0.1943 40 1 -10.1300 -1.0634 0.0316 41 1 -8.7420 0.9564 0.2592 42 1 -6.2875 0.7714 0.2614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004544384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:34 Heat of formation + Delta-G solvation = 23.016954 kcal Electronic energy + Delta-G solvation = -27773.421794 eV Core-core repulsion = 23687.100356 eV Total energy + Delta-G solvation = -4086.321438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31238 -39.02160 -38.70018 -37.22679 -36.29435 -35.50354 -32.38394 -32.02452 -31.23305 -30.33660 -29.64085 -28.71305 -27.50714 -25.23364 -23.33777 -22.72422 -22.14214 -21.48304 -20.14343 -19.92438 -18.44661 -17.82719 -17.39457 -16.37883 -16.29844 -16.27588 -16.04952 -15.50516 -14.82958 -14.45903 -14.34192 -14.14987 -14.06285 -13.75183 -13.55590 -13.52423 -13.43044 -12.70897 -12.64932 -12.55022 -12.34937 -11.75624 -11.74169 -11.54121 -11.22027 -11.01873 -10.98162 -10.78003 -10.74786 -10.65565 -10.36100 -9.49520 -9.24338 -9.16748 -8.96610 -8.91371 -8.65534 -8.32702 -7.68653 -6.93654 -6.15826 -3.80559 1.17672 1.30626 1.69613 2.47902 2.50001 2.93420 3.22862 3.24362 3.26950 3.55279 3.61588 3.65054 4.08444 4.57743 4.70684 4.73037 4.81758 4.90495 4.98857 5.05616 5.21194 5.21659 5.29467 5.35129 5.37803 5.47770 5.56742 5.71857 5.85140 5.90438 6.10412 6.16328 6.23659 6.27977 6.36988 6.51079 6.61218 6.76629 6.89388 7.16557 7.25738 7.30145 7.42941 7.46304 7.67911 7.87512 8.11410 8.32800 9.10261 9.17117 9.84896 10.89137 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.002826 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.888449 B = 9905.144776 C =12224.784693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.045 3.955 3 Si 0.928 3.072 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.410 4.410 8 H 0.089 0.911 9 O -0.113 6.113 10 C 0.163 3.837 11 C -0.237 4.237 12 C -0.061 4.061 13 C -0.231 4.231 14 C -0.042 4.042 15 C -0.150 4.150 16 C 0.099 3.901 17 N -0.181 5.181 18 N -0.593 5.593 19 C 0.500 3.500 20 O -0.408 6.408 21 C 0.051 3.949 22 O -0.283 6.283 23 C 0.135 3.865 24 C -0.214 4.214 25 C -0.081 4.081 26 C -0.165 4.165 27 C -0.081 4.081 28 C -0.149 4.149 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.366 0.634 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.046 -8.542 -0.745 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.166 4.166 3 Si 0.753 3.247 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.106 0.894 9 O -0.009 6.009 10 C 0.103 3.897 11 C -0.256 4.256 12 C -0.080 4.080 13 C -0.250 4.250 14 C -0.063 4.063 15 C -0.154 4.154 16 C -0.110 4.110 17 N 0.013 4.987 18 N -0.338 5.338 19 C 0.281 3.719 20 O -0.271 6.271 21 C -0.030 4.030 22 O -0.194 6.194 23 C 0.089 3.911 24 C -0.233 4.233 25 C -0.100 4.100 26 C -0.183 4.183 27 C -0.099 4.099 28 C -0.168 4.168 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.202 0.798 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.190 -6.229 -0.499 14.595 hybrid contribution 0.078 -0.935 -0.195 0.958 sum -13.111 -7.164 -0.694 14.957 Atomic orbital electron populations 1.70245 1.04752 1.27373 1.39074 1.25362 0.95880 0.98402 0.96961 0.86001 0.78887 0.80825 0.78967 1.19704 1.20387 1.19695 1.21301 0.91597 0.81205 1.54489 0.89413 1.84168 1.33206 1.10815 1.72720 1.19440 0.89965 0.87859 0.92483 1.21116 0.93681 0.99040 1.11778 1.20835 0.98397 0.92441 0.96338 1.20385 0.94019 0.96956 1.13684 1.20621 0.93496 0.95419 0.96765 1.17306 0.88878 0.91700 1.17547 1.24246 0.94039 0.93454 0.99239 1.75948 0.86644 1.24009 1.12108 1.46898 1.03532 1.08465 1.74927 1.19656 0.86929 0.84909 0.80453 1.91137 1.70997 1.25751 1.39212 1.22387 0.92976 0.84649 1.02968 1.86222 1.17346 1.28523 1.87325 1.19143 0.82202 0.94446 0.95279 1.21281 0.94960 0.97798 1.09251 1.20920 0.93843 0.97713 0.97484 1.21046 0.99858 0.92664 1.04715 1.20979 0.92556 0.98841 0.97483 1.20539 0.94748 0.95914 1.05559 0.91969 0.85508 0.87636 0.87587 0.86953 0.88267 0.79789 0.89450 0.89456 0.85467 0.85909 0.86066 0.85376 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.80 12.58 55.48 0.70 -23.10 16 2 C 0.05 1.28 5.49 -17.52 -0.10 1.18 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.41 -11.67 9.49 30.88 0.29 -11.38 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 9 O -0.11 -3.23 7.64 0.55 0.00 -3.23 16 10 C 0.16 3.99 6.66 -38.62 -0.26 3.73 16 11 C -0.24 -5.19 9.16 -39.45 -0.36 -5.55 16 12 C -0.06 -1.11 10.03 -39.52 -0.40 -1.50 16 13 C -0.23 -3.88 10.03 -39.60 -0.40 -4.27 16 14 C -0.04 -0.72 9.79 -39.17 -0.38 -1.10 16 15 C -0.15 -3.11 5.88 -104.88 -0.62 -3.73 16 16 C 0.10 1.90 10.75 -14.70 -0.16 1.74 16 17 N -0.18 -4.09 8.90 32.13 0.29 -3.80 16 18 N -0.59 -10.64 6.26 31.22 0.20 -10.45 16 19 C 0.50 9.76 8.02 -10.99 -0.09 9.67 16 20 O -0.41 -10.69 15.75 -14.38 -0.23 -10.92 16 21 C 0.05 0.69 5.22 36.00 0.19 0.88 16 22 O -0.28 -4.68 9.67 -39.34 -0.38 -5.06 16 23 C 0.14 1.85 6.69 -39.22 -0.26 1.59 16 24 C -0.21 -2.33 9.04 -39.44 -0.36 -2.68 16 25 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 26 C -0.16 -1.52 10.04 -39.56 -0.40 -1.91 16 27 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 28 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 29 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 30 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.10 1.41 8.02 -52.49 -0.42 0.99 16 35 H 0.37 4.55 8.65 -182.59 -1.58 2.97 16 36 H 0.09 0.92 7.65 -51.93 -0.40 0.52 16 37 H 0.09 0.91 7.68 -51.93 -0.40 0.51 16 38 H 0.13 1.10 6.30 -52.48 -0.33 0.77 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -37.12 371.88 -9.11 -46.23 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.79 Total: 6.50 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -4.48 Total: -18.00 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 1.18 Total: -37.34 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.60 Total: -19.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.12 -9.11 -46.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004544384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.250 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds