Wall clock time and date at job start Tue Mar 31 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35708 * 117.00436 * 2 1 4 4 C 1.38994 * 119.91096 * 180.02562 * 3 2 1 5 5 C 1.37706 * 120.09220 * 180.02562 * 4 3 2 6 6 C 1.39754 * 119.90762 * 359.97438 * 5 4 3 7 7 C 1.47553 * 120.09278 * 179.97438 * 6 5 4 8 8 O 1.21629 * 119.99291 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00523 * 180.02562 * 7 6 5 10 10 N 1.40095 * 120.00187 * 185.09899 * 9 7 6 11 11 C 1.29870 * 119.99780 * 185.00515 * 10 9 7 12 12 C 1.47298 * 119.99990 * 185.13960 * 11 10 9 13 13 C 1.39687 * 120.19804 * 184.65137 * 12 11 10 14 14 C 1.37888 * 119.90095 * 180.02562 * 13 12 11 15 15 C 1.38522 * 120.32176 * 0.02562 * 14 13 12 16 16 C 1.38115 * 120.40655 * 359.69628 * 15 14 13 17 17 C 1.38724 * 120.08240 * 0.55934 * 16 15 14 18 18 O 1.35612 * 120.15596 * 179.74676 * 17 16 15 19 19 C 1.34796 * 116.99979 * 93.63715 * 18 17 16 20 20 H 1.08003 * 120.00350 * 5.70846 * 19 18 17 21 21 C 1.38650 * 119.99680 * 185.43331 * 19 18 17 22 22 N 1.31559 * 119.99900 * 175.39644 * 21 19 18 23 23 Si 1.86796 * 119.99940 * 355.39783 * 21 19 18 24 24 H 1.48497 * 109.47206 * 94.97985 * 23 21 19 25 25 H 1.48501 * 109.47084 * 214.97508 * 23 21 19 26 26 H 1.48497 * 109.47309 * 334.97448 * 23 21 19 27 27 C 1.39766 * 119.81852 * 0.25743 * 6 5 4 28 28 C 1.37696 * 119.90642 * 359.48820 * 27 6 5 29 29 H 1.08992 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46919 * 299.99758 * 1 2 3 31 31 H 1.09003 * 109.47332 * 59.99336 * 1 2 3 32 32 H 1.08002 * 119.95708 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.04156 * 179.97438 * 5 4 3 34 34 H 0.97009 * 119.99831 * 5.09604 * 9 7 6 35 35 H 1.08000 * 120.00308 * 5.14489 * 11 10 9 36 36 H 1.07993 * 120.04948 * 0.04159 * 13 12 11 37 37 H 1.08000 * 119.83615 * 179.97438 * 14 13 12 38 38 H 1.07997 * 119.79993 * 179.97438 * 15 14 13 39 39 H 1.08004 * 119.95985 * 180.27533 * 16 15 14 40 40 H 0.97001 * 120.00451 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.04358 * 179.72519 * 27 6 5 42 42 H 1.08005 * 119.95210 * 180.25518 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4334 1.2796 -0.0005 5 6 4.0625 2.5045 0.0000 6 6 3.3033 3.6779 0.0005 7 6 3.9732 4.9926 0.0017 8 8 5.1878 5.0561 0.0017 9 7 3.2393 6.1229 0.0027 10 7 3.8713 7.3686 -0.1040 11 6 3.1752 8.4605 -0.0055 12 6 3.8181 9.7666 -0.2300 13 6 3.0988 10.9473 -0.0305 14 6 3.7065 12.1667 -0.2430 15 6 5.0279 12.2273 -0.6542 16 6 5.7530 11.0681 -0.8498 17 6 5.1567 9.8322 -0.6461 18 8 5.8658 8.6931 -0.8428 19 6 6.4747 8.1577 0.2341 20 1 6.3107 8.5819 1.2137 21 6 7.3071 7.0590 0.0848 22 7 7.9722 6.5923 1.1195 23 14 7.4843 6.2415 -1.5854 24 1 8.6741 6.7925 -2.2825 25 1 7.6508 4.7770 -1.4045 26 1 6.2689 6.5051 -2.3969 27 6 1.9077 3.6026 0.0060 28 6 1.2864 2.3737 0.0001 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0194 0.3724 -0.0014 33 1 5.1411 2.5584 0.0000 34 1 2.2733 6.0739 0.0773 35 1 2.1249 8.4109 0.2412 36 1 2.0683 10.9052 0.2899 37 1 3.1493 13.0789 -0.0888 38 1 5.4954 13.1868 -0.8185 39 1 6.7841 11.1239 -1.1662 40 1 8.5549 5.8238 1.0151 41 1 1.3174 4.5070 0.0109 42 1 0.2080 2.3147 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004690149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:40 Heat of formation + Delta-G solvation = 29.308887 kcal Electronic energy + Delta-G solvation = -28523.062248 eV Core-core repulsion = 24437.013649 eV Total energy + Delta-G solvation = -4086.048599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.48172 -39.25161 -38.93938 -37.09659 -36.18286 -35.73882 -32.58347 -31.65932 -31.28572 -30.56453 -29.67469 -28.79108 -27.59503 -24.60501 -23.91719 -23.06250 -22.30332 -21.64889 -20.29279 -20.04674 -18.57993 -17.74247 -17.39393 -16.82050 -16.56381 -16.15114 -16.07276 -15.34320 -15.03255 -14.58225 -14.50776 -14.16756 -14.13636 -13.86991 -13.61406 -13.51401 -12.96312 -12.90069 -12.74419 -12.70653 -12.13097 -11.99683 -11.87521 -11.59995 -11.44412 -11.17774 -11.07516 -11.06220 -10.59731 -10.06211 -9.94275 -9.44107 -9.25035 -9.24689 -9.10747 -9.06604 -8.42381 -8.10902 -7.88600 -7.43341 -5.72399 -3.38510 0.83321 1.16316 1.41442 1.97524 2.81245 2.90681 2.96359 3.28439 3.66789 3.77054 3.91847 4.03508 4.38691 4.44365 4.60897 4.74355 4.78658 4.78926 4.92202 5.04632 5.06665 5.10852 5.19023 5.29006 5.37656 5.45295 5.47971 5.60640 5.76097 5.77039 5.86433 5.94120 6.00823 6.05154 6.20135 6.30769 6.49668 6.50950 6.61967 6.88994 6.96776 7.06836 7.22220 7.42397 7.60889 8.16530 8.20140 8.64980 8.99069 9.69552 10.22486 11.39558 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.003287 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.864872 B = 8515.134648 C =10123.189856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.146 3.854 4 C -0.157 4.157 5 C -0.017 4.017 6 C -0.156 4.156 7 C 0.560 3.440 8 O -0.451 6.451 9 N -0.591 5.591 10 N -0.142 5.142 11 C 0.071 3.929 12 C -0.091 4.091 13 C -0.086 4.086 14 C -0.158 4.158 15 C -0.099 4.099 16 C -0.152 4.152 17 C 0.182 3.818 18 O -0.259 6.259 19 C -0.333 4.333 20 H 0.074 0.926 21 C 0.086 3.914 22 N -0.904 5.904 23 Si 0.924 3.076 24 H -0.304 1.304 25 H -0.292 1.292 26 H -0.271 1.271 27 C -0.049 4.049 28 C -0.217 4.217 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.368 0.632 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.266 0.734 41 H 0.127 0.873 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.902 -4.926 -2.186 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.100 3.900 4 C -0.176 4.176 5 C -0.036 4.036 6 C -0.161 4.161 7 C 0.346 3.654 8 O -0.320 6.320 9 N -0.334 5.334 10 N 0.054 4.946 11 C -0.139 4.139 12 C -0.095 4.095 13 C -0.106 4.106 14 C -0.176 4.176 15 C -0.118 4.118 16 C -0.170 4.170 17 C 0.134 3.866 18 O -0.171 6.171 19 C -0.408 4.408 20 H 0.092 0.908 21 C -0.113 4.113 22 N -0.548 5.548 23 Si 0.755 3.245 24 H -0.233 1.233 25 H -0.218 1.218 26 H -0.197 1.197 27 C -0.068 4.068 28 C -0.236 4.236 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.206 0.794 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.075 0.925 41 H 0.144 0.856 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.942 -5.934 -2.440 18.116 hybrid contribution -1.845 -0.123 -0.221 1.863 sum -18.787 -6.057 -2.661 19.918 Atomic orbital electron populations 1.23099 0.78209 1.04079 1.01554 1.86045 1.21578 1.26982 1.88158 1.19274 0.92415 0.84105 0.94224 1.20420 0.91165 0.98740 1.07244 1.21184 1.01248 0.89735 0.91459 1.19907 0.93460 0.93559 1.09185 1.17901 0.87410 0.82105 0.77988 1.90875 1.12222 1.85942 1.42990 1.47164 1.07933 1.04239 1.74066 1.76120 1.21049 0.89428 1.07956 1.24207 0.96251 0.91779 1.01684 1.18908 0.94832 0.90487 1.05231 1.20903 0.98914 0.91246 0.99568 1.20779 0.95550 0.96949 1.04330 1.21031 0.94237 0.97649 0.98866 1.21570 1.00516 0.91776 1.03169 1.19069 0.89423 0.87876 0.90253 1.83385 1.64832 1.34349 1.34565 1.19932 1.22210 1.13813 0.84868 0.90842 1.23902 0.94855 0.94929 0.97649 1.69633 1.29742 1.25546 1.29864 0.85890 0.76623 0.78085 0.83899 1.23310 1.21830 1.19650 1.21081 0.93309 0.97386 0.95044 1.21104 1.00110 0.91992 1.10368 0.88134 0.92438 0.92462 0.84373 0.83445 0.79384 0.87760 0.86368 0.86547 0.86511 0.85505 0.92480 0.85558 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.24 10.48 -18.83 -0.20 -3.44 16 3 C 0.15 1.69 6.70 -39.02 -0.26 1.42 16 4 C -0.16 -1.99 9.97 -39.50 -0.39 -2.38 16 5 C -0.02 -0.26 9.59 -39.21 -0.38 -0.64 16 6 C -0.16 -2.47 5.88 -104.96 -0.62 -3.08 16 7 C 0.56 11.50 7.88 -12.46 -0.10 11.40 16 8 O -0.45 -11.76 12.59 5.25 0.07 -11.69 16 9 N -0.59 -11.06 6.20 30.47 0.19 -10.87 16 10 N -0.14 -3.18 7.62 32.13 0.24 -2.94 16 11 C 0.07 1.32 10.74 -14.70 -0.16 1.16 16 12 C -0.09 -1.77 5.88 -104.88 -0.62 -2.39 16 13 C -0.09 -1.30 9.79 -39.17 -0.38 -1.68 16 14 C -0.16 -2.24 10.03 -39.60 -0.40 -2.63 16 15 C -0.10 -1.53 10.03 -39.52 -0.40 -1.93 16 16 C -0.15 -2.96 9.98 -39.45 -0.39 -3.35 16 17 C 0.18 4.15 5.61 -38.61 -0.22 3.93 16 18 O -0.26 -7.12 7.13 0.57 0.00 -7.12 16 19 C -0.33 -10.09 8.55 30.88 0.26 -9.82 16 20 H 0.07 2.40 7.99 -52.48 -0.42 1.98 16 21 C 0.09 2.68 4.59 -17.52 -0.08 2.60 16 22 N -0.90 -29.39 13.96 55.48 0.77 -28.61 16 23 Si 0.92 26.65 25.81 -169.99 -4.39 22.26 16 24 H -0.30 -8.57 7.11 56.52 0.40 -8.16 16 25 H -0.29 -8.36 7.11 56.52 0.40 -7.96 16 26 H -0.27 -7.99 7.11 56.52 0.40 -7.59 16 27 C -0.05 -0.59 9.53 -39.21 -0.37 -0.96 16 28 C -0.22 -2.25 9.01 -39.50 -0.36 -2.61 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 31 H 0.06 0.29 7.65 -51.93 -0.40 -0.10 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.15 2.40 7.64 -52.49 -0.40 2.00 16 34 H 0.37 4.98 6.70 -182.59 -1.22 3.76 16 35 H 0.11 1.42 8.04 -52.49 -0.42 1.00 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 40 H 0.27 8.25 8.31 -40.82 -0.34 7.91 16 41 H 0.13 1.15 6.41 -52.48 -0.34 0.82 16 42 H 0.13 0.97 6.28 -52.48 -0.33 0.64 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -39.38 363.77 -7.29 -46.66 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.60 Total: 0.06 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.86 Total: -9.80 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 1.21 Total: -42.42 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.13 Total: -22.25 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -4.39 Total: 22.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.38 -7.29 -46.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004690149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.973 kcal (2) G-P(sol) polarization free energy of solvation -39.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds