Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35708 * 117.00436 * 2 1 4 4 C 1.38994 * 119.91096 * 180.02562 * 3 2 1 5 5 C 1.37706 * 120.09220 * 180.02562 * 4 3 2 6 6 C 1.39754 * 119.90762 * 359.97438 * 5 4 3 7 7 C 1.47553 * 120.09278 * 179.97438 * 6 5 4 8 8 O 1.21629 * 119.99291 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00523 * 180.02562 * 7 6 5 10 10 N 1.40095 * 120.00187 * 185.09899 * 9 7 6 11 11 C 1.29870 * 119.99780 * 185.00515 * 10 9 7 12 12 C 1.47298 * 119.99990 * 185.13960 * 11 10 9 13 13 C 1.39687 * 120.19804 * 184.65137 * 12 11 10 14 14 C 1.37888 * 119.90095 * 180.02562 * 13 12 11 15 15 C 1.38522 * 120.32176 * 0.02562 * 14 13 12 16 16 C 1.38115 * 120.40655 * 359.69628 * 15 14 13 17 17 C 1.38724 * 120.08240 * 0.55934 * 16 15 14 18 18 O 1.35612 * 120.15596 * 179.74676 * 17 16 15 19 19 C 1.34796 * 116.99979 * 93.63715 * 18 17 16 20 20 H 1.08003 * 120.00350 * 5.70846 * 19 18 17 21 21 C 1.38650 * 119.99680 * 185.43331 * 19 18 17 22 22 N 1.31559 * 119.99900 * 175.39644 * 21 19 18 23 23 Si 1.86796 * 119.99940 * 355.39783 * 21 19 18 24 24 H 1.48497 * 109.47206 * 94.97985 * 23 21 19 25 25 H 1.48501 * 109.47084 * 214.97508 * 23 21 19 26 26 H 1.48497 * 109.47309 * 334.97448 * 23 21 19 27 27 C 1.39766 * 119.81852 * 0.25743 * 6 5 4 28 28 C 1.37696 * 119.90642 * 359.48820 * 27 6 5 29 29 H 1.08992 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46919 * 299.99758 * 1 2 3 31 31 H 1.09003 * 109.47332 * 59.99336 * 1 2 3 32 32 H 1.08002 * 119.95708 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.04156 * 179.97438 * 5 4 3 34 34 H 0.97009 * 119.99831 * 5.09604 * 9 7 6 35 35 H 1.08000 * 120.00308 * 5.14489 * 11 10 9 36 36 H 1.07993 * 120.04948 * 0.04159 * 13 12 11 37 37 H 1.08000 * 119.83615 * 179.97438 * 14 13 12 38 38 H 1.07997 * 119.79993 * 179.97438 * 15 14 13 39 39 H 1.08004 * 119.95985 * 180.27533 * 16 15 14 40 40 H 0.97001 * 120.00451 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.04358 * 179.72519 * 27 6 5 42 42 H 1.08005 * 119.95210 * 180.25518 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4334 1.2796 -0.0005 5 6 4.0625 2.5045 0.0000 6 6 3.3033 3.6779 0.0005 7 6 3.9732 4.9926 0.0017 8 8 5.1878 5.0561 0.0017 9 7 3.2393 6.1229 0.0027 10 7 3.8713 7.3686 -0.1040 11 6 3.1752 8.4605 -0.0055 12 6 3.8181 9.7666 -0.2300 13 6 3.0988 10.9473 -0.0305 14 6 3.7065 12.1667 -0.2430 15 6 5.0279 12.2273 -0.6542 16 6 5.7530 11.0681 -0.8498 17 6 5.1567 9.8322 -0.6461 18 8 5.8658 8.6931 -0.8428 19 6 6.4747 8.1577 0.2341 20 1 6.3107 8.5819 1.2137 21 6 7.3071 7.0590 0.0848 22 7 7.9722 6.5923 1.1195 23 14 7.4843 6.2415 -1.5854 24 1 8.6741 6.7925 -2.2825 25 1 7.6508 4.7770 -1.4045 26 1 6.2689 6.5051 -2.3969 27 6 1.9077 3.6026 0.0060 28 6 1.2864 2.3737 0.0001 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0194 0.3724 -0.0014 33 1 5.1411 2.5584 0.0000 34 1 2.2733 6.0739 0.0773 35 1 2.1249 8.4109 0.2412 36 1 2.0683 10.9052 0.2899 37 1 3.1493 13.0789 -0.0888 38 1 5.4954 13.1868 -0.8185 39 1 6.7841 11.1239 -1.1662 40 1 8.5549 5.8238 1.0151 41 1 1.3174 4.5070 0.0109 42 1 0.2080 2.3147 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004690149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = 0.157480 kcal Electronic energy + Delta-G solvation = -28524.326348 eV Core-core repulsion = 24437.013649 eV Total energy + Delta-G solvation = -4087.312699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48294 -40.69723 -40.29795 -38.14389 -37.93175 -37.27229 -34.02587 -33.91945 -32.32504 -31.69084 -31.00079 -30.17540 -28.25543 -26.71107 -25.23363 -24.19818 -23.39402 -23.11405 -21.60470 -21.50041 -19.83188 -19.49196 -18.81335 -18.33018 -18.10688 -17.11998 -16.77425 -16.72669 -16.25250 -16.13803 -16.04066 -15.83945 -15.40727 -15.15225 -14.84924 -14.74785 -14.50795 -14.22937 -14.02177 -13.85126 -13.73912 -13.53476 -13.37760 -12.85534 -12.84431 -12.62561 -12.50996 -12.11940 -12.04810 -11.91679 -11.81635 -11.47893 -11.01807 -10.67451 -10.52271 -10.21615 -10.21017 -9.49505 -9.38829 -8.93143 -8.12393 -5.74736 -0.28835 0.06782 0.21011 0.57630 1.26833 1.40826 1.50788 1.57732 1.60851 2.05773 2.22315 2.56634 2.78213 2.97738 3.36651 3.54691 3.61379 3.73818 3.77579 3.81112 4.03277 4.07762 4.23777 4.28731 4.36163 4.41762 4.41898 4.48060 4.60972 4.70296 4.74373 4.83354 4.87526 4.97153 5.06441 5.10103 5.19861 5.27563 5.51012 5.57453 5.65620 5.69049 5.77994 6.09419 6.23562 6.29114 6.39767 6.76354 7.34778 7.62096 8.10321 9.04600 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.003287 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.864872 B = 8515.134648 C =10123.189856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.155 3.845 4 C -0.164 4.164 5 C -0.036 4.036 6 C -0.183 4.183 7 C 0.552 3.448 8 O -0.524 6.524 9 N -0.578 5.578 10 N -0.221 5.221 11 C 0.087 3.913 12 C -0.111 4.111 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.088 4.088 16 C -0.175 4.175 17 C 0.117 3.883 18 O -0.282 6.282 19 C -0.296 4.296 20 H 0.035 0.965 21 C 0.042 3.958 22 N -0.948 5.948 23 Si 0.978 3.022 24 H -0.297 1.297 25 H -0.300 1.300 26 H -0.287 1.287 27 C -0.035 4.035 28 C -0.204 4.204 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.117 0.883 34 H 0.394 0.606 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.262 0.738 41 H 0.158 0.842 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.611 -3.097 -2.457 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.109 3.891 4 C -0.183 4.183 5 C -0.056 4.056 6 C -0.188 4.188 7 C 0.341 3.659 8 O -0.398 6.398 9 N -0.322 5.322 10 N -0.024 5.024 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.089 4.089 14 C -0.155 4.155 15 C -0.106 4.106 16 C -0.194 4.194 17 C 0.070 3.930 18 O -0.195 6.195 19 C -0.373 4.373 20 H 0.053 0.947 21 C -0.152 4.152 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.225 1.225 25 H -0.227 1.227 26 H -0.213 1.213 27 C -0.054 4.054 28 C -0.223 4.223 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.135 0.865 34 H 0.236 0.764 35 H 0.177 0.823 36 H 0.186 0.814 37 H 0.186 0.814 38 H 0.172 0.828 39 H 0.131 0.869 40 H 0.071 0.929 41 H 0.175 0.825 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -22.729 -4.067 -2.732 23.251 hybrid contribution -0.445 -0.464 -0.117 0.653 sum -23.173 -4.531 -2.849 23.784 Atomic orbital electron populations 1.23500 0.75637 1.06095 1.02951 1.86052 1.24190 1.26175 1.87485 1.19361 0.92008 0.85308 0.92463 1.20460 0.92472 0.97920 1.07437 1.21031 1.00147 0.91100 0.93275 1.19673 0.95260 0.90948 1.12907 1.18778 0.87010 0.83803 0.76315 1.90809 1.15242 1.87031 1.46758 1.46843 1.09037 1.03015 1.73350 1.76066 1.24303 0.91281 1.10780 1.24765 0.98489 0.90576 0.98476 1.19284 0.94008 0.92727 1.05415 1.21464 1.00718 0.89654 0.97049 1.21443 0.94756 0.98616 1.00698 1.21468 0.94973 0.97406 0.96796 1.21642 1.00705 0.92503 1.04531 1.19682 0.91079 0.87219 0.94998 1.83365 1.65837 1.36862 1.33419 1.19514 1.21460 1.12153 0.84129 0.94670 1.24321 0.95558 0.95802 0.99533 1.69711 1.31857 1.26707 1.31340 0.85056 0.75716 0.76862 0.81337 1.22527 1.22729 1.21270 1.21337 0.91345 0.99479 0.93201 1.21493 1.02009 0.90523 1.08245 0.86108 0.90947 0.90973 0.83369 0.86465 0.76448 0.82253 0.81398 0.81371 0.82834 0.86936 0.92878 0.82463 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.79 10.48 -90.29 -0.95 -6.73 16 3 C 0.16 3.27 6.70 22.63 0.15 3.42 16 4 C -0.16 -4.24 9.97 22.33 0.22 -4.01 16 5 C -0.04 -1.19 9.59 22.51 0.22 -0.98 16 6 C -0.18 -5.99 5.88 -20.08 -0.12 -6.11 16 7 C 0.55 24.09 7.88 86.70 0.68 24.77 16 8 O -0.52 -29.76 12.59 -4.12 -0.05 -29.81 16 9 N -0.58 -21.99 6.20 -175.77 -1.09 -23.08 16 10 N -0.22 -10.16 7.62 -52.25 -0.40 -10.56 16 11 C 0.09 3.11 10.74 87.37 0.94 4.04 16 12 C -0.11 -4.13 5.88 -20.03 -0.12 -4.25 16 13 C -0.07 -1.72 9.79 22.54 0.22 -1.50 16 14 C -0.14 -3.07 10.03 22.25 0.22 -2.85 16 15 C -0.09 -2.41 10.03 22.31 0.22 -2.18 16 16 C -0.18 -6.87 9.98 22.36 0.22 -6.65 16 17 C 0.12 5.44 5.61 22.90 0.13 5.57 16 18 O -0.28 -16.38 7.13 -20.88 -0.15 -16.53 16 19 C -0.30 -19.18 8.55 67.92 0.58 -18.60 16 20 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 21 C 0.04 2.80 4.59 84.83 0.39 3.19 16 22 N -0.95 -66.17 13.96 21.61 0.30 -65.87 16 23 Si 0.98 59.65 25.81 68.60 1.77 61.42 16 24 H -0.30 -17.21 7.11 99.48 0.71 -16.50 16 25 H -0.30 -18.35 7.11 99.48 0.71 -17.64 16 26 H -0.29 -17.89 7.11 99.48 0.71 -17.19 16 27 C -0.04 -0.76 9.53 22.51 0.21 -0.54 16 28 C -0.20 -3.52 9.01 22.32 0.20 -3.32 16 29 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.40 7.65 -2.38 -0.02 0.38 16 31 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.12 4.45 7.64 -2.91 -0.02 4.42 16 34 H 0.39 10.06 6.70 -213.31 -1.43 8.63 16 35 H 0.16 3.63 8.04 -2.91 -0.02 3.61 16 36 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 39 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 40 H 0.26 17.58 8.31 -92.71 -0.77 16.81 16 41 H 0.16 2.28 6.41 -2.91 -0.02 2.26 16 42 H 0.17 1.54 6.28 -2.91 -0.02 1.52 16 Total: -1.00 -99.28 363.77 4.57 -94.71 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -0.36 Total: 5.23 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 5.49 Total: -8.78 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -1.19 Total: -99.51 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.15 Total: -53.08 kcal Atomic # 14 Polarization: 59.65 SS G_CDS: 1.77 Total: 61.42 kcal Total: -99.28 4.57 -94.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004690149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.867 kcal (2) G-P(sol) polarization free energy of solvation -99.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds