Wall clock time and date at job start Tue Mar 31 2020 05:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99441 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.46885 * 149.99643 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.37685 * 126.50082 * 90.00177 * 10 9 7 12 12 C 1.50701 * 126.51943 * 359.97438 * 11 10 9 13 13 O 1.42901 * 109.47144 * 180.02562 * 12 11 10 14 14 C 1.34389 * 106.95742 * 179.97438 * 11 10 9 15 15 N 1.34356 * 108.34553 * 0.02562 * 14 11 10 16 16 C 1.31275 * 109.30739 * 359.72041 * 15 14 11 17 17 S 1.76199 * 125.80450 * 180.29132 * 16 15 14 18 18 C 1.80998 * 100.00128 * 0.17888 * 17 16 15 19 19 C 1.50697 * 109.47218 * 180.02562 * 18 17 16 20 20 C 1.38428 * 120.02284 * 269.72340 * 19 18 17 21 21 F 1.35096 * 120.01097 * 0.02562 * 20 19 18 22 22 C 1.38466 * 119.97244 * 179.79075 * 20 19 18 23 23 C 1.38208 * 120.02866 * 0.48682 * 22 20 19 24 24 C 1.38211 * 120.04971 * 359.74197 * 23 22 20 25 25 C 1.38414 * 120.02797 * 89.99720 * 19 18 17 26 26 F 1.35094 * 120.01376 * 0.02562 * 25 19 18 27 27 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 29 29 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 30 30 H 1.09002 * 109.47232 * 299.99733 * 12 11 10 31 31 H 1.08992 * 109.47763 * 60.00050 * 12 11 10 32 32 H 0.96692 * 114.00487 * 180.02562 * 13 12 11 33 33 H 1.07998 * 125.82463 * 179.97438 * 14 11 10 34 34 H 1.09007 * 109.46610 * 300.00014 * 18 17 16 35 35 H 1.09002 * 109.47247 * 59.99872 * 18 17 16 36 36 H 1.07997 * 119.98625 * 180.23099 * 22 20 19 37 37 H 1.07995 * 119.97802 * 179.76664 * 23 22 20 38 38 H 1.07997 * 119.98968 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7353 -4.2352 1.1073 12 6 2.4497 -3.9004 2.5486 13 8 3.1969 -4.7737 3.3977 14 6 3.5579 -5.1981 0.6578 15 7 3.5398 -5.1766 -0.6855 16 6 2.7249 -4.2317 -1.0936 17 16 2.3700 -3.8306 -2.7722 18 6 3.4077 -5.0519 -3.6134 19 6 3.2619 -4.8930 -5.1048 20 6 2.2874 -5.6028 -5.7850 21 9 1.4661 -6.4380 -5.1120 22 6 2.1515 -5.4527 -7.1548 23 6 2.9950 -4.6022 -7.8444 24 6 3.9714 -3.8966 -7.1671 25 6 4.1060 -4.0415 -5.7965 26 9 5.0615 -3.3527 -5.1348 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8904 30 1 2.7382 -2.8679 2.7459 31 1 1.3850 -4.0241 2.7464 32 1 3.0614 -4.6154 4.3419 33 1 4.1355 -5.8734 1.2715 34 1 4.4497 -4.8987 -3.3321 35 1 3.0966 -6.0552 -3.3224 36 1 1.3889 -6.0035 -7.6852 37 1 2.8907 -4.4887 -8.9133 38 1 4.6302 -3.2327 -7.7069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004720220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:40 Heat of formation + Delta-G solvation = -59.581494 kcal Electronic energy + Delta-G solvation = -26250.010205 eV Core-core repulsion = 22048.630370 eV Total energy + Delta-G solvation = -4201.379834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.09432 -49.05662 -41.09475 -39.03095 -36.48820 -34.12147 -33.14448 -32.07259 -30.49542 -29.98745 -27.39214 -27.25310 -25.27891 -23.30018 -23.04776 -22.21890 -20.95926 -19.36684 -18.27709 -17.47487 -17.16162 -16.94410 -16.68750 -16.32161 -15.95693 -15.71159 -15.33613 -15.09563 -14.95955 -14.55550 -14.48765 -14.03486 -13.87985 -13.68137 -13.28064 -13.13424 -13.03361 -12.90988 -12.41135 -12.11912 -11.93340 -11.86395 -11.54632 -11.40898 -11.10213 -10.90267 -10.38516 -10.30588 -10.12236 -9.99930 -9.43107 -8.97490 -8.94162 -8.71849 -8.60507 -8.58083 -6.75994 -6.34222 -4.42673 0.58896 0.77186 1.86856 2.54714 2.67131 3.17624 3.22160 3.24050 3.28506 3.67337 3.69832 3.71556 4.21380 4.23087 4.23327 4.44815 4.56754 4.69859 4.90722 5.00655 5.26538 5.39810 5.45158 5.69472 5.70363 5.71002 5.77610 5.82340 5.83440 5.88304 5.90796 6.14089 6.53905 6.60957 6.84801 7.20889 7.46304 7.57607 7.76250 7.78309 7.85701 8.56432 8.64693 9.25116 10.73856 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.003914 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.567536 B = 7151.448813 C = 8773.180437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.230 3.770 10 N -0.403 5.403 11 C -0.020 4.020 12 C 0.163 3.837 13 O -0.567 6.567 14 C -0.011 4.011 15 N -0.508 5.508 16 C 0.183 3.817 17 S 0.014 5.986 18 C -0.070 4.070 19 C -0.145 4.145 20 C 0.146 3.854 21 F -0.122 7.122 22 C -0.167 4.167 23 C -0.059 4.059 24 C -0.166 4.166 25 C 0.148 3.852 26 F -0.120 7.120 27 H 0.269 0.731 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.382 0.618 33 H 0.166 0.834 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -9.051 -10.691 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.111 3.889 10 N -0.086 5.086 11 C -0.140 4.140 12 C 0.084 3.916 13 O -0.371 6.371 14 C -0.163 4.163 15 N -0.231 5.231 16 C -0.187 4.187 17 S 0.247 5.753 18 C -0.218 4.218 19 C -0.149 4.149 20 C 0.125 3.875 21 F -0.100 7.100 22 C -0.186 4.186 23 C -0.078 4.078 24 C -0.185 4.185 25 C 0.127 3.873 26 F -0.098 7.098 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.229 0.771 33 H 0.184 0.816 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.675 -8.696 -12.131 15.372 hybrid contribution 0.508 0.836 2.019 2.244 sum 4.182 -7.860 -10.112 13.473 Atomic orbital electron populations 1.69922 1.06071 1.27815 1.48788 1.24910 0.94940 0.99482 0.94122 0.86362 0.79726 0.82068 0.78670 1.20047 1.20834 1.19596 1.21212 0.93708 0.89318 1.53486 0.91599 1.19877 0.87070 0.81932 0.99983 1.45872 1.33550 1.26039 1.03125 1.20682 1.04014 0.99988 0.89310 1.19938 0.94189 0.92835 0.84629 1.86357 1.70386 1.60272 1.20111 1.21780 1.03029 1.01289 0.90213 1.70604 1.20151 1.20168 1.12172 1.24533 1.01921 0.98145 0.94143 1.85815 1.57222 1.43433 0.88872 1.22138 1.05143 1.03554 0.90995 1.19409 0.98786 1.01189 0.95496 1.17202 0.89470 0.90890 0.89934 1.91558 1.69753 1.68326 1.80387 1.21191 1.02727 1.02579 0.92063 1.20859 0.92822 0.93703 1.00446 1.21214 1.01809 1.03349 0.92143 1.17221 0.87858 0.92174 0.90047 1.91574 1.60606 1.76730 1.80927 0.92148 0.92852 0.93298 0.91589 0.92710 0.77095 0.81629 0.87283 0.87390 0.83806 0.83823 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 20.88 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.57 9.39 -34.44 -0.32 -14.89 16 8 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.23 5.80 5.56 -5.19 -0.03 5.78 16 10 N -0.40 -9.48 2.79 -113.64 -0.32 -9.80 16 11 C -0.02 -0.43 6.94 -81.32 -0.56 -0.99 16 12 C 0.16 2.86 7.19 36.01 0.26 3.11 16 13 O -0.57 -8.38 12.97 -35.23 -0.46 -8.84 16 14 C -0.01 -0.24 11.20 -17.81 -0.20 -0.44 16 15 N -0.51 -11.22 10.60 -13.45 -0.14 -11.36 16 16 C 0.18 4.15 7.96 -88.74 -0.71 3.44 16 17 S 0.01 0.28 21.61 -107.50 -2.32 -2.04 16 18 C -0.07 -1.15 4.97 36.00 0.18 -0.97 16 19 C -0.15 -2.01 5.15 -104.49 -0.54 -2.55 16 20 C 0.15 1.81 7.24 -39.43 -0.29 1.53 16 21 F -0.12 -1.67 16.47 2.25 0.04 -1.63 16 22 C -0.17 -1.52 10.02 -39.51 -0.40 -1.92 16 23 C -0.06 -0.46 10.04 -39.60 -0.40 -0.86 16 24 C -0.17 -1.56 10.03 -39.50 -0.40 -1.96 16 25 C 0.15 1.90 7.24 -39.43 -0.29 1.61 16 26 F -0.12 -1.75 16.48 2.25 0.04 -1.71 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.05 1.42 7.72 -51.93 -0.40 1.02 16 29 H 0.05 1.25 7.91 -51.93 -0.41 0.83 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.38 3.48 9.12 45.56 0.42 3.90 16 33 H 0.17 3.12 7.85 -52.49 -0.41 2.71 16 34 H 0.11 1.82 7.64 -51.91 -0.40 1.43 16 35 H 0.11 1.75 7.63 -51.92 -0.40 1.36 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -31.98 357.91 -9.10 -41.08 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.26 Total: 4.22 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.78 Total: -7.33 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.28 Total: -44.99 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.46 Total: -8.84 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.07 Total: -3.34 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.32 Total: -2.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.98 -9.10 -41.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004720220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.504 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds