Wall clock time and date at job start Tue Mar 31 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00174 * 2 1 4 4 H 1.48509 * 109.47209 * 270.00284 * 3 2 1 5 5 H 1.48498 * 109.47152 * 30.00129 * 3 2 1 6 6 H 1.48503 * 109.47350 * 150.00276 * 3 2 1 7 7 C 1.37879 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99796 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00438 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99725 * 264.90017 * 10 9 7 12 12 C 1.50693 * 109.47519 * 270.00552 * 11 10 9 13 13 C 1.38240 * 119.99905 * 269.72414 * 12 11 10 14 14 C 1.38238 * 120.00225 * 179.76289 * 13 12 11 15 15 C 1.38239 * 119.99342 * 0.48928 * 14 13 12 16 16 C 1.38232 * 120.00210 * 359.78981 * 15 14 13 17 17 C 1.38226 * 120.00294 * 359.95427 * 16 15 14 18 18 C 1.34781 * 120.00129 * 84.90787 * 10 9 7 19 19 O 1.21550 * 119.99715 * 185.54437 * 18 10 9 20 20 C 1.47838 * 119.99898 * 5.54170 * 18 10 9 21 21 C 1.39601 * 120.14366 * 64.25040 * 20 18 10 22 22 C 1.37943 * 119.85380 * 180.02562 * 21 20 18 23 23 C 1.38386 * 120.14094 * 359.93493 * 22 21 20 24 24 C 1.38335 * 120.29585 * 359.97438 * 23 22 21 25 25 C 1.37986 * 120.14311 * 0.04407 * 24 23 22 26 26 N 1.48014 * 120.06776 * 179.70315 * 25 24 23 27 27 O 1.21795 * 120.00420 * 355.24875 * 26 25 24 28 28 O 1.21800 * 119.99475 * 175.24593 * 26 25 24 29 29 H 0.96997 * 119.99942 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47122 * 59.99386 * 9 7 2 31 31 H 1.09002 * 109.46939 * 299.99752 * 9 7 2 32 32 H 1.09003 * 109.47199 * 30.00676 * 11 10 9 33 33 H 1.09002 * 109.46916 * 150.00041 * 11 10 9 34 34 H 1.08000 * 119.99640 * 0.02562 * 13 12 11 35 35 H 1.07996 * 120.00315 * 180.25349 * 14 13 12 36 36 H 1.08007 * 119.99460 * 179.76266 * 15 14 13 37 37 H 1.08009 * 119.99483 * 179.97438 * 16 15 14 38 38 H 1.08003 * 120.00492 * 179.97438 * 17 16 15 39 39 H 1.07998 * 120.07413 * 359.97438 * 21 20 18 40 40 H 1.07994 * 119.92905 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.85008 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.92696 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 4.3507 -3.2291 1.2609 12 6 5.8052 -2.9815 1.5677 13 6 6.7670 -3.8659 1.1163 14 6 8.1017 -3.6362 1.3935 15 6 8.4736 -2.5275 2.1307 16 6 7.5112 -1.6463 2.5870 17 6 6.1771 -1.8732 2.3053 18 6 4.1263 -3.2445 -1.1653 19 8 4.4343 -4.4203 -1.1596 20 6 3.8904 -2.5483 -2.4480 21 6 4.7244 -1.4998 -2.8404 22 6 4.4985 -0.8541 -4.0382 23 6 3.4486 -1.2445 -4.8509 24 6 2.6196 -2.2839 -4.4689 25 6 2.8344 -2.9379 -3.2730 26 7 1.9424 -4.0456 -2.8629 27 8 0.9673 -4.3239 -3.5375 28 8 2.1835 -4.6787 -1.8507 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 3.7357 -2.8224 2.0637 33 1 4.1747 -4.3015 1.1761 34 1 6.4761 -4.7339 0.5434 35 1 8.8535 -4.3248 1.0373 36 1 9.5160 -2.3501 2.3506 37 1 7.8018 -0.7803 3.1634 38 1 5.4251 -1.1849 2.6622 39 1 5.5442 -1.1944 -2.2071 40 1 5.1427 -0.0426 -4.3427 41 1 3.2763 -0.7359 -5.7879 42 1 1.8023 -2.5840 -5.1079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004755028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:16 Heat of formation + Delta-G solvation = 26.666712 kcal Electronic energy + Delta-G solvation = -30143.905753 eV Core-core repulsion = 26057.742580 eV Total energy + Delta-G solvation = -4086.163173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71355 -39.99623 -39.06455 -38.06765 -35.95087 -35.29317 -32.86131 -32.03077 -31.80444 -30.87626 -30.74649 -28.15158 -26.60531 -25.69656 -23.69046 -22.70341 -22.27149 -22.16344 -21.24647 -19.62185 -18.44961 -18.00755 -17.20413 -17.05910 -16.83672 -16.56776 -15.91988 -15.43417 -15.40105 -15.04068 -14.80081 -14.54249 -14.21936 -13.85820 -13.35932 -13.26678 -13.01719 -12.68230 -12.65155 -12.42358 -12.30096 -12.10489 -11.69160 -11.61392 -11.22740 -11.05098 -10.94479 -10.83987 -10.70244 -10.53637 -10.49660 -10.37488 -9.77704 -9.53145 -9.43943 -9.10773 -8.81181 -8.77772 -8.62687 -7.92435 -6.28910 -4.31833 0.17676 0.92815 1.44100 1.54438 1.75000 1.89450 3.00976 3.05928 3.13531 3.16053 3.31350 3.64239 4.04993 4.16434 4.51210 4.63548 4.72503 4.95038 5.00558 5.00987 5.02524 5.06214 5.13053 5.23229 5.29999 5.55073 5.62610 5.66440 5.79839 5.87529 5.92690 6.07108 6.07740 6.21547 6.23965 6.28342 6.39068 6.46738 6.60790 6.61969 6.83307 6.88712 7.13057 7.14873 7.32692 7.90494 8.20457 8.27749 8.62844 8.79595 9.28400 10.83524 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008990 B = 0.005574 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.967526 B = 5022.124919 C = 6309.783492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.205 3.795 10 N -0.574 5.574 11 C 0.156 3.844 12 C -0.097 4.097 13 C -0.099 4.099 14 C -0.127 4.127 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.104 4.104 18 C 0.563 3.437 19 O -0.524 6.524 20 C -0.028 4.028 21 C -0.093 4.093 22 C -0.076 4.076 23 C -0.111 4.111 24 C -0.059 4.059 25 C 0.001 3.999 26 N 0.028 4.972 27 O -0.180 6.180 28 O -0.117 6.117 29 H 0.267 0.733 30 H 0.039 0.961 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.456 0.528 -3.932 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.084 3.916 10 N -0.303 5.303 11 C 0.034 3.966 12 C -0.098 4.098 13 C -0.117 4.117 14 C -0.145 4.145 15 C -0.143 4.143 16 C -0.145 4.145 17 C -0.122 4.122 18 C 0.349 3.651 19 O -0.401 6.401 20 C -0.032 4.032 21 C -0.112 4.112 22 C -0.094 4.094 23 C -0.130 4.130 24 C -0.078 4.078 25 C -0.082 4.082 26 N 0.550 4.450 27 O -0.390 6.390 28 O -0.342 6.342 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.801 0.586 -4.156 15.385 hybrid contribution -0.084 1.009 0.134 1.021 sum 14.717 1.594 -4.022 15.339 Atomic orbital electron populations 1.69893 1.06180 1.27218 1.48812 1.24863 0.94697 0.98735 0.94220 0.87008 0.80637 0.84240 0.78937 1.19874 1.20632 1.18699 1.21375 0.88867 0.95187 1.52862 0.90297 1.19941 0.96083 0.77815 0.97728 1.47730 1.62492 1.15803 1.04322 1.20311 0.90146 0.99809 0.86383 1.20430 0.96584 0.95141 0.97639 1.21262 0.92516 0.99484 0.98473 1.21127 0.96092 0.97888 0.99443 1.21099 0.99057 0.95255 0.98842 1.21098 0.93134 0.99507 1.00749 1.21180 0.96217 0.96851 0.97994 1.17728 0.78031 0.85980 0.83384 1.90751 1.48424 1.14157 1.86787 1.19828 0.93160 0.95127 0.95095 1.21222 0.99430 0.93404 0.97146 1.21446 0.96694 0.98195 0.93082 1.21220 0.94721 0.96220 1.00836 1.20958 0.99284 0.93900 0.93692 1.20980 0.94856 0.94241 0.98160 1.43401 1.00404 1.00935 1.00246 1.94469 1.18374 1.72595 1.53534 1.94654 1.76893 1.49271 1.13373 0.92253 0.94299 0.95510 0.88994 0.88925 0.85433 0.86435 0.86591 0.86379 0.85865 0.83724 0.83925 0.83662 0.82858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 13.96 55.43 0.77 -25.04 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 19.34 27.47 -169.99 -4.67 14.67 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 7 C -0.54 -14.40 9.90 -34.44 -0.34 -14.74 16 8 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 9 C 0.21 4.43 4.03 -5.19 -0.02 4.41 16 10 N -0.57 -11.57 2.45 -177.56 -0.44 -12.01 16 11 C 0.16 2.77 5.55 -5.20 -0.03 2.74 16 12 C -0.10 -1.50 5.46 -104.63 -0.57 -2.07 16 13 C -0.10 -1.45 9.70 -39.58 -0.38 -1.84 16 14 C -0.13 -1.60 10.05 -39.58 -0.40 -1.99 16 15 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 16 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 17 C -0.10 -1.48 9.70 -39.59 -0.38 -1.86 16 18 C 0.56 11.67 5.45 -12.33 -0.07 11.60 16 19 O -0.52 -11.60 14.51 -18.18 -0.26 -11.86 16 20 C -0.03 -0.53 4.68 -104.97 -0.49 -1.02 16 21 C -0.09 -1.39 7.84 -39.18 -0.31 -1.70 16 22 C -0.08 -0.90 10.03 -39.63 -0.40 -1.30 16 23 C -0.11 -1.31 10.04 -39.49 -0.40 -1.71 16 24 C -0.06 -0.90 9.55 -39.64 -0.38 -1.28 16 25 C 0.00 0.02 6.87 -79.55 -0.55 -0.52 16 26 N 0.03 0.63 4.45 34.16 0.15 0.78 16 27 O -0.18 -3.90 18.46 -29.46 -0.54 -4.44 16 28 O -0.12 -2.82 15.19 -36.90 -0.56 -3.38 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.04 0.81 7.09 -51.93 -0.37 0.44 16 31 H 0.03 0.56 4.81 -51.93 -0.25 0.31 16 32 H 0.09 1.59 8.02 -51.93 -0.42 1.17 16 33 H 0.09 1.68 7.29 -51.93 -0.38 1.30 16 34 H 0.13 1.96 7.88 -52.49 -0.41 1.55 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.15 1.90 7.96 -52.49 -0.42 1.48 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.15 2.03 7.62 -52.49 -0.40 1.63 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -33.19 367.03 -10.39 -43.58 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.77 Total: 5.22 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -5.61 Total: -13.05 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.49 Total: -36.26 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.37 Total: -19.68 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.67 Total: 14.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.19 -10.39 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004755028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.244 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds