Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99715 * 2 1 4 4 H 1.48490 * 109.47315 * 270.00443 * 3 2 1 5 5 H 1.48503 * 109.46999 * 30.00637 * 3 2 1 6 6 H 1.48505 * 109.46728 * 150.00219 * 3 2 1 7 7 C 1.37878 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99461 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99999 * 278.03142 * 10 9 7 12 12 C 1.50700 * 109.46918 * 270.00144 * 11 10 9 13 13 C 1.38236 * 119.99936 * 269.72617 * 12 11 10 14 14 C 1.38236 * 119.99837 * 179.76528 * 13 12 11 15 15 C 1.38225 * 120.00117 * 0.50976 * 14 13 12 16 16 C 1.38233 * 120.00191 * 359.74282 * 15 14 13 17 17 C 1.38233 * 120.00298 * 89.99580 * 12 11 10 18 18 C 1.34774 * 120.00185 * 98.03236 * 10 9 7 19 19 O 1.21552 * 120.00186 * 186.07538 * 18 10 9 20 20 C 1.47851 * 119.99724 * 6.06715 * 18 10 9 21 21 C 1.39574 * 120.14006 * 150.35049 * 20 18 10 22 22 C 1.37958 * 119.85115 * 180.02562 * 21 20 18 23 23 C 1.38364 * 120.14508 * 359.97438 * 22 21 20 24 24 N 1.48016 * 119.85446 * 179.97438 * 23 22 21 25 25 O 1.21798 * 120.00013 * 0.02562 * 24 23 22 26 26 O 1.21800 * 119.99886 * 179.72445 * 24 23 22 27 27 C 1.38363 * 120.29111 * 0.26011 * 23 22 21 28 28 C 1.37955 * 120.14248 * 359.48259 * 27 23 22 29 29 H 0.97000 * 120.00298 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46998 * 60.00447 * 9 7 2 31 31 H 1.08998 * 109.47414 * 300.00161 * 9 7 2 32 32 H 1.08995 * 109.47164 * 29.99904 * 11 10 9 33 33 H 1.08996 * 109.47232 * 150.00399 * 11 10 9 34 34 H 1.08004 * 120.00241 * 0.02562 * 13 12 11 35 35 H 1.08007 * 119.99736 * 180.23388 * 14 13 12 36 36 H 1.08001 * 120.00028 * 179.72363 * 15 14 13 37 37 H 1.08001 * 120.00255 * 179.97438 * 16 15 14 38 38 H 1.07998 * 119.99900 * 0.02562 * 17 12 11 39 39 H 1.07992 * 120.07639 * 0.02562 * 21 20 18 40 40 H 1.07997 * 119.93204 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.92322 * 179.72107 * 27 23 22 42 42 H 1.08004 * 120.07223 * 180.22884 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.8140 -4.0541 -1.2569 12 6 1.9541 -5.1198 -1.8861 13 6 2.1736 -6.4513 -1.5864 14 6 1.3816 -7.4285 -2.1598 15 6 0.3771 -7.0750 -3.0411 16 6 0.1610 -5.7439 -3.3449 17 6 0.9494 -4.7663 -2.7673 18 6 2.5172 -4.2308 1.1552 19 8 3.3874 -5.0793 1.1737 20 6 1.8033 -3.8767 2.4006 21 6 1.6316 -4.8302 3.4052 22 6 0.9641 -4.4935 4.5647 23 6 0.4659 -3.2136 4.7329 24 7 -0.2498 -2.8595 5.9793 25 8 -0.3986 -3.6937 6.8541 26 8 -0.6850 -1.7323 6.1323 27 6 0.6285 -2.2651 3.7388 28 6 1.2987 -2.5873 2.5768 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8904 31 1 0.6248 -2.5571 0.8896 32 1 2.8985 -3.2068 -1.9372 33 1 3.8057 -4.4592 -1.0560 34 1 2.9611 -6.7279 -0.9009 35 1 1.5507 -8.4686 -1.9227 36 1 -0.2387 -7.8388 -3.4926 37 1 -0.6236 -5.4677 -4.0338 38 1 0.7810 -3.7264 -3.0052 39 1 2.0203 -5.8293 3.2753 40 1 0.8301 -5.2303 5.3427 41 1 0.2333 -1.2692 3.8745 42 1 1.4282 -1.8450 1.8032 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004755047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = 36.083751 kcal Electronic energy + Delta-G solvation = -29006.721217 eV Core-core repulsion = 24920.966398 eV Total energy + Delta-G solvation = -4085.754819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00060 -40.34332 -39.04925 -37.96492 -36.39678 -35.66125 -33.29167 -32.27943 -31.34874 -30.82287 -30.71650 -27.86229 -27.13377 -25.55069 -23.52749 -22.87935 -22.55051 -22.20020 -21.21790 -19.40356 -19.10473 -18.49456 -17.36139 -17.13607 -16.97987 -16.40877 -16.05004 -15.19777 -14.97825 -14.88492 -14.73208 -14.55852 -14.43289 -13.89107 -13.63645 -13.23530 -13.12053 -12.74065 -12.60507 -12.57570 -12.33156 -11.89261 -11.58832 -11.39943 -11.26996 -11.13625 -11.06059 -11.04057 -10.98395 -10.76573 -10.54377 -10.26817 -10.07869 -9.63118 -9.30926 -9.11120 -8.78040 -8.73668 -8.58042 -8.08980 -6.52015 -4.64666 -0.09715 1.20309 1.40870 1.45732 1.57578 1.59016 2.95259 3.05636 3.15556 3.17348 3.44800 3.75552 4.05013 4.08653 4.61262 4.67520 4.79636 4.80654 5.02545 5.04604 5.11835 5.15007 5.17926 5.32077 5.52703 5.55160 5.68487 5.81213 5.86520 5.95986 6.03952 6.09725 6.19169 6.23826 6.32354 6.37721 6.55633 6.61475 6.64574 6.80825 6.83847 6.86345 7.13957 7.16977 7.42726 7.63601 7.82361 7.93608 8.41387 8.58355 9.05647 10.51869 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007900 B = 0.004603 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.548998 B = 6082.145635 C = 8530.993849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.205 3.795 10 N -0.576 5.576 11 C 0.156 3.844 12 C -0.098 4.098 13 C -0.101 4.101 14 C -0.129 4.129 15 C -0.124 4.124 16 C -0.126 4.126 17 C -0.099 4.099 18 C 0.554 3.446 19 O -0.556 6.556 20 C -0.080 4.080 21 C -0.071 4.071 22 C -0.081 4.081 23 C -0.033 4.033 24 N 0.031 4.969 25 O -0.172 6.172 26 O -0.161 6.161 27 C -0.066 4.066 28 C -0.095 4.095 29 H 0.273 0.727 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -8.781 -1.718 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.086 3.914 10 N -0.304 5.304 11 C 0.033 3.967 12 C -0.099 4.099 13 C -0.119 4.119 14 C -0.147 4.147 15 C -0.142 4.142 16 C -0.144 4.144 17 C -0.118 4.118 18 C 0.342 3.658 19 O -0.437 6.437 20 C -0.083 4.083 21 C -0.091 4.091 22 C -0.100 4.100 23 C -0.116 4.116 24 N 0.549 4.451 25 O -0.386 6.386 26 O -0.378 6.378 27 C -0.085 4.085 28 C -0.113 4.113 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.366 -9.244 -2.331 9.631 hybrid contribution -0.049 1.053 0.314 1.100 sum 1.317 -8.191 -2.017 8.537 Atomic orbital electron populations 1.69913 1.06022 1.28296 1.46874 1.25023 0.94958 0.99642 0.93854 0.86470 0.80035 0.82346 0.78741 1.20126 1.20601 1.19399 1.21447 0.94219 0.89980 1.53644 0.91236 1.20380 0.88194 0.82517 1.00279 1.48096 1.44071 1.33200 1.05018 1.20294 0.95269 0.95687 0.85454 1.20359 0.97594 0.94763 0.97201 1.21213 0.99492 0.92433 0.98803 1.21106 0.96411 0.99142 0.98034 1.21104 0.98237 0.96214 0.98645 1.21124 0.99747 0.93052 1.00497 1.21205 0.94587 0.99796 0.96190 1.18084 0.82807 0.81414 0.83483 1.90699 1.32385 1.34419 1.86202 1.20518 0.97733 0.94808 0.95236 1.21176 0.96582 1.00363 0.90948 1.20814 0.96399 0.94005 0.98782 1.21446 1.05422 0.97689 0.87042 1.43734 0.98777 1.00277 1.02338 1.94491 1.62447 1.45372 1.36263 1.94538 1.50853 1.06827 1.85560 1.21216 0.96610 0.99688 0.90964 1.23786 0.91323 0.98599 0.97561 0.91743 0.94137 0.92023 0.88806 0.89594 0.85683 0.86488 0.86577 0.86297 0.85592 0.83303 0.83092 0.82687 0.76065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.97 13.29 55.43 0.74 -20.23 16 2 C 0.07 1.64 5.32 -17.82 -0.09 1.54 16 3 Si 0.90 18.31 29.54 -169.99 -5.02 13.29 16 4 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.56 -12.32 7.47 -34.44 -0.26 -12.57 16 8 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.21 4.21 4.64 -5.19 -0.02 4.18 16 10 N -0.58 -10.69 2.45 -177.54 -0.43 -11.13 16 11 C 0.16 2.57 5.59 -5.19 -0.03 2.54 16 12 C -0.10 -1.51 5.46 -104.62 -0.57 -2.08 16 13 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 14 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 15 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 16 C -0.13 -1.64 10.05 -39.58 -0.40 -2.03 16 17 C -0.10 -1.46 9.70 -39.58 -0.38 -1.84 16 18 C 0.55 10.42 7.46 -12.33 -0.09 10.32 16 19 O -0.56 -11.02 16.11 5.32 0.09 -10.94 16 20 C -0.08 -1.38 5.58 -104.97 -0.59 -1.97 16 21 C -0.07 -1.05 9.60 -39.19 -0.38 -1.43 16 22 C -0.08 -1.15 9.54 -39.64 -0.38 -1.52 16 23 C -0.03 -0.53 6.86 -79.86 -0.55 -1.08 16 24 N 0.03 0.52 4.45 34.01 0.15 0.67 16 25 O -0.17 -2.87 18.43 -29.46 -0.54 -3.41 16 26 O -0.16 -2.86 18.43 -29.46 -0.54 -3.40 16 27 C -0.07 -1.10 9.54 -39.64 -0.38 -1.48 16 28 C -0.10 -1.71 7.49 -39.19 -0.29 -2.00 16 29 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 30 H 0.04 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.06 1.31 4.09 -51.95 -0.21 1.09 16 32 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 33 H 0.09 1.40 7.29 -51.93 -0.38 1.03 16 34 H 0.13 1.86 7.91 -52.48 -0.41 1.45 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.15 1.95 7.92 -52.49 -0.42 1.54 16 40 H 0.15 1.78 7.60 -52.49 -0.40 1.38 16 41 H 0.16 2.51 7.60 -52.49 -0.40 2.12 16 42 H 0.22 4.47 3.00 -52.48 -0.16 4.32 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -25.15 367.99 -10.06 -35.22 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.45 Total: 9.64 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -5.59 Total: -15.25 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.45 Total: -30.69 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.00 Total: -17.75 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -25.15 -10.06 -35.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004755047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.300 kcal (2) G-P(sol) polarization free energy of solvation -25.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds