Wall clock time and date at job start Tue Mar 31 2020 06:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47540 * 326.61990 * 3 2 1 5 5 N 1.46494 * 109.47328 * 184.89465 * 4 3 2 6 6 C 1.46496 * 120.00453 * 265.22269 * 5 4 3 7 7 C 1.50699 * 109.47304 * 269.31029 * 6 5 4 8 8 H 1.08004 * 119.99989 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00133 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99836 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99945 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47050 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47420 * 120.00033 * 11 9 7 14 14 H 1.48506 * 109.46754 * 239.99887 * 11 9 7 15 15 C 1.34782 * 119.99918 * 85.22211 * 5 4 3 16 16 O 1.21279 * 119.99665 * 5.15980 * 15 5 4 17 17 C 1.50698 * 120.00131 * 185.15681 * 15 5 4 18 18 H 1.09003 * 110.88665 * 36.84299 * 17 15 5 19 19 C 1.54789 * 111.17221 * 273.06027 * 17 15 5 20 20 C 1.51284 * 104.11841 * 266.93497 * 19 17 15 21 21 O 1.21286 * 124.93756 * 163.67485 * 20 19 17 22 22 N 1.34417 * 110.11554 * 343.40674 * 20 19 17 23 23 C 1.39926 * 124.34835 * 179.84878 * 22 20 19 24 24 C 1.38875 * 120.07013 * 355.73694 * 23 22 20 25 25 C 1.38111 * 119.93086 * 179.74213 * 24 23 22 26 26 C 1.38283 * 120.06666 * 0.54002 * 25 24 23 27 27 C 1.38283 * 120.14324 * 359.72017 * 26 25 24 28 28 C 1.38110 * 120.06892 * 0.02562 * 27 26 25 29 29 C 1.46759 * 111.30329 * 359.82408 * 22 20 19 30 30 H 1.09001 * 109.46723 * 206.61790 * 3 2 1 31 31 H 1.09004 * 109.47096 * 86.62429 * 3 2 1 32 32 H 1.09003 * 109.47187 * 64.89642 * 4 3 2 33 33 H 1.09002 * 109.47142 * 304.90086 * 4 3 2 34 34 H 1.09004 * 109.47110 * 29.30790 * 6 5 4 35 35 H 1.09002 * 109.47497 * 149.31026 * 6 5 4 36 36 H 0.97004 * 119.99465 * 180.02562 * 10 9 7 37 37 H 1.08997 * 110.61554 * 148.23043 * 19 17 15 38 38 H 1.09000 * 110.42751 * 25.54139 * 19 17 15 39 39 H 1.08007 * 120.03311 * 359.97438 * 24 23 22 40 40 H 1.07996 * 119.96899 * 180.25613 * 25 24 23 41 41 H 1.08004 * 119.92745 * 179.69215 * 26 25 24 42 42 H 1.07999 * 119.96773 * 180.02562 * 27 26 25 43 43 H 1.08002 * 120.03825 * 180.02562 * 28 27 26 44 44 H 1.08990 * 110.25037 * 136.01832 * 29 22 20 45 45 H 1.09009 * 110.24671 * 257.93280 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2036 0.7936 5 7 4.5788 -1.1394 0.8929 6 6 5.4111 -1.8601 -0.0735 7 6 5.7033 -3.2434 0.4483 8 1 5.3088 -3.5544 1.4043 9 6 6.4743 -4.1120 -0.2949 10 7 6.9551 -3.7331 -1.4589 11 14 6.8358 -5.8269 0.3515 12 1 6.1846 -6.0047 1.6742 13 1 6.3075 -6.8365 -0.6006 14 1 8.3035 -6.0024 0.4952 15 6 5.1565 -0.4173 1.8734 16 8 4.4708 0.1024 2.7281 17 6 6.6544 -0.2556 1.9076 18 1 7.0586 -0.1647 0.8994 19 6 7.3258 -1.4258 2.6664 20 6 7.4467 -0.9227 4.0880 21 8 7.6581 -1.6216 5.0565 22 7 7.2916 0.4121 4.1208 23 6 7.3447 1.1847 5.2862 24 6 7.4816 0.5691 6.5235 25 6 7.5390 1.3347 7.6715 26 6 7.4491 2.7123 7.5908 27 6 7.3073 3.3280 6.3607 28 6 7.2545 2.5682 5.2086 29 6 7.0600 0.9551 2.7771 30 1 2.9709 0.9196 0.4604 31 1 2.9714 -0.0597 -1.0259 32 1 2.8291 -2.1231 0.2849 33 1 2.6854 -1.1898 1.7937 34 1 4.8827 -1.9345 -1.0240 35 1 6.3475 -1.3216 -0.2195 36 1 7.4972 -4.3443 -1.9819 37 1 8.3112 -1.6372 2.2513 38 1 6.6962 -2.3148 2.6286 39 1 7.5469 -0.5071 6.5876 40 1 7.6496 0.8569 8.6337 41 1 7.4893 3.3085 8.4904 42 1 7.2377 4.4041 6.3009 43 1 7.1441 3.0497 4.2481 44 1 6.2549 1.6893 2.8006 45 1 7.9728 1.4092 2.3913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004998686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:16 Heat of formation + Delta-G solvation = -7.949364 kcal Electronic energy + Delta-G solvation = -29621.536006 eV Core-core repulsion = 25604.278952 eV Total energy + Delta-G solvation = -4017.257055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20162 -39.42004 -38.33233 -36.84736 -36.19440 -35.32946 -33.35858 -32.81358 -31.20241 -30.88821 -28.95752 -27.70634 -27.32761 -25.01190 -23.35645 -22.97906 -22.76945 -21.34526 -19.69587 -18.59358 -17.67687 -17.55603 -17.16445 -16.70271 -16.33079 -15.77189 -15.48675 -15.31049 -14.75916 -14.62167 -14.55717 -14.45047 -13.97659 -13.63270 -13.44324 -13.35238 -13.26420 -13.12876 -12.67910 -12.55191 -12.38954 -12.30419 -12.21009 -11.80946 -11.73901 -11.67547 -11.37198 -11.28847 -11.11110 -11.08487 -10.93132 -10.70938 -10.26178 -10.19856 -9.90827 -9.44655 -9.33567 -8.92150 -8.70949 -8.07426 -7.83192 -6.35372 -4.42968 1.32313 1.43732 2.69522 2.76875 2.87842 2.91519 3.01674 3.14390 3.25084 3.29854 3.46880 3.91434 4.20906 4.22616 4.37207 4.58179 4.84822 4.94704 4.96671 4.98812 5.01065 5.18278 5.19355 5.23904 5.41845 5.44939 5.47035 5.55583 5.58305 5.67886 5.69706 5.90495 6.00958 6.03300 6.15549 6.21571 6.34317 6.41356 6.46482 6.59241 6.61429 6.92524 7.14014 7.17896 7.23273 7.59296 7.63692 7.84687 7.99098 8.18729 8.55151 8.70686 9.26548 10.71057 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.003996 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.724769 B = 7005.470185 C = 9377.111677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.220 3.780 3 C -0.044 4.044 4 C 0.125 3.875 5 N -0.591 5.591 6 C 0.233 3.767 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.071 3.929 10 N -0.887 5.887 11 Si 0.890 3.110 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.523 3.477 16 O -0.558 6.558 17 C -0.116 4.116 18 H 0.131 0.869 19 C -0.132 4.132 20 C 0.520 3.480 21 O -0.514 6.514 22 N -0.554 5.554 23 C 0.181 3.819 24 C -0.162 4.162 25 C -0.093 4.093 26 C -0.156 4.156 27 C -0.094 4.094 28 C -0.160 4.160 29 C 0.113 3.887 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.266 0.734 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 12.028 5.834 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.098 4.098 3 C -0.085 4.085 4 C 0.000 4.000 5 N -0.320 5.320 6 C 0.114 3.886 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.133 4.133 10 N -0.525 5.525 11 Si 0.717 3.283 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.206 1.206 15 C 0.310 3.690 16 O -0.438 6.438 17 C -0.137 4.137 18 H 0.148 0.852 19 C -0.173 4.173 20 C 0.311 3.689 21 O -0.390 6.390 22 N -0.276 5.276 23 C 0.086 3.914 24 C -0.182 4.182 25 C -0.111 4.111 26 C -0.175 4.175 27 C -0.113 4.113 28 C -0.181 4.181 29 C -0.010 4.010 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.982 11.811 6.571 13.660 hybrid contribution 0.700 -1.028 -0.020 1.244 sum 2.683 10.783 6.550 12.899 Atomic orbital electron populations 1.81187 1.13089 1.08942 1.09333 1.29088 0.95126 0.92925 0.92704 1.19763 0.81418 1.02794 1.04553 1.21132 0.81546 0.96502 1.00813 1.48178 1.05769 1.47725 1.30365 1.19605 0.90253 0.91388 0.87378 1.21467 1.32989 0.97962 1.05695 0.91843 1.24875 0.95198 0.98590 0.94610 1.69901 1.34216 1.36472 1.11863 0.86551 0.78399 0.84028 0.79311 1.19463 1.20822 1.20642 1.20093 0.89386 0.78485 0.81030 1.90674 1.64818 1.50120 1.38139 1.22261 0.94220 0.95202 1.02035 0.85168 1.22372 1.04772 0.99929 0.90178 1.21324 0.74383 0.81093 0.92124 1.90580 1.47973 1.60200 1.40282 1.45790 1.67374 1.07796 1.06634 1.17821 0.97659 0.90458 0.85450 1.21687 1.03186 1.02788 0.90513 1.21024 0.98475 0.93727 0.97917 1.21054 1.04019 0.94835 0.97569 1.20877 0.98956 0.99426 0.92022 1.20765 1.06364 0.91544 0.99409 1.22173 1.02103 0.96702 0.79977 0.87394 0.86977 0.88961 0.90189 0.94098 0.93860 0.92391 0.86255 0.85247 0.82829 0.85961 0.86368 0.85950 0.85767 0.88723 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.15 18.54 42.15 0.78 -6.37 16 2 C 0.22 2.94 15.43 -20.76 -0.32 2.62 16 3 C -0.04 -0.49 5.99 -29.52 -0.18 -0.67 16 4 C 0.13 1.79 5.36 -4.05 -0.02 1.77 16 5 N -0.59 -9.47 2.47 -175.07 -0.43 -9.90 16 6 C 0.23 4.30 5.01 -5.20 -0.03 4.28 16 7 C -0.54 -11.84 7.95 -34.44 -0.27 -12.12 16 8 H 0.06 1.46 7.50 -52.48 -0.39 1.06 16 9 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -21.43 13.29 55.43 0.74 -20.70 16 11 Si 0.89 18.90 29.54 -169.99 -5.02 13.88 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 C 0.52 8.44 6.76 -10.98 -0.07 8.37 16 16 O -0.56 -10.31 15.52 5.56 0.09 -10.23 16 17 C -0.12 -1.58 2.66 -90.05 -0.24 -1.82 16 18 H 0.13 1.56 6.39 -51.93 -0.33 1.23 16 19 C -0.13 -2.05 6.21 -26.65 -0.17 -2.22 16 20 C 0.52 8.88 7.92 -10.86 -0.09 8.79 16 21 O -0.51 -10.14 14.80 5.55 0.08 -10.06 16 22 N -0.55 -8.31 3.14 -112.27 -0.35 -8.66 16 23 C 0.18 2.69 6.60 -83.69 -0.55 2.13 16 24 C -0.16 -2.46 9.29 -39.39 -0.37 -2.83 16 25 C -0.09 -1.16 10.04 -39.61 -0.40 -1.55 16 26 C -0.16 -1.71 10.04 -39.55 -0.40 -2.11 16 27 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 28 C -0.16 -1.97 9.40 -39.39 -0.37 -2.34 16 29 C 0.11 1.36 5.50 -3.12 -0.02 1.35 16 30 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 33 H 0.08 1.23 7.50 -51.93 -0.39 0.84 16 34 H 0.04 0.79 8.07 -51.93 -0.42 0.38 16 35 H 0.04 0.79 5.91 -51.93 -0.31 0.49 16 36 H 0.27 6.24 8.31 -40.82 -0.34 5.91 16 37 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.13 2.34 6.29 -51.93 -0.33 2.02 16 39 H 0.15 2.63 5.24 -52.48 -0.27 2.35 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 1.28 6.96 -52.49 -0.37 0.91 16 44 H 0.09 1.14 6.87 -51.93 -0.36 0.78 16 45 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -29.40 382.08 -8.02 -37.42 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.68 Total: 5.08 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.98 Total: 3.78 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.73 Total: -45.63 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.29 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.40 -8.02 -37.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004998686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.468 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds