Wall clock time and date at job start Tue Mar 31 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86792 * 120.00228 * 2 1 4 4 H 1.48491 * 109.47449 * 269.99758 * 3 2 1 5 5 H 1.48506 * 109.47152 * 30.00327 * 3 2 1 6 6 H 1.48507 * 109.47207 * 149.99988 * 3 2 1 7 7 C 1.38937 * 119.99485 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99543 * 159.98464 * 7 2 1 9 9 N 1.37207 * 119.99909 * 339.97984 * 7 2 1 10 10 C 1.34350 * 119.61486 * 139.44297 * 9 7 2 11 11 O 1.21552 * 118.52539 * 359.94938 * 10 9 7 12 12 N 1.34222 * 122.94957 * 179.97438 * 10 9 7 13 13 C 1.46501 * 119.44443 * 179.97438 * 12 10 9 14 14 C 1.50708 * 109.46951 * 89.99670 * 13 12 10 15 15 C 1.38246 * 119.97271 * 270.22921 * 14 13 12 16 16 C 1.38199 * 120.02050 * 180.27896 * 15 14 13 17 17 C 1.38453 * 119.97911 * 359.46993 * 16 15 14 18 18 F 1.35097 * 120.02834 * 180.29712 * 17 16 15 19 19 C 1.38465 * 119.94496 * 0.27469 * 17 16 15 20 20 C 1.38196 * 119.97500 * 0.02562 * 19 17 16 21 21 C 1.35137 * 121.11062 * 0.24183 * 12 10 9 22 22 O 1.21593 * 120.90875 * 179.74401 * 21 12 10 23 23 C 1.47266 * 118.18122 * 359.53429 * 21 12 10 24 24 C 1.39420 * 121.94650 * 180.22558 * 23 21 12 25 25 C 1.38523 * 117.87503 * 180.23507 * 24 23 21 26 26 C 1.38521 * 119.43626 * 359.97438 * 25 24 23 27 27 N 1.31858 * 121.57292 * 0.02562 * 26 25 24 28 28 C 1.32239 * 121.51465 * 359.95771 * 27 26 25 29 29 H 0.97000 * 119.99181 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47024 * 329.99959 * 13 12 10 31 31 H 1.09002 * 109.46881 * 209.99311 * 13 12 10 32 32 H 1.07996 * 119.99011 * 0.04872 * 15 14 13 33 33 H 1.08002 * 120.00466 * 179.74609 * 16 15 14 34 34 H 1.08000 * 120.00724 * 180.02562 * 19 17 16 35 35 H 1.07999 * 119.98509 * 179.97438 * 20 19 17 36 36 H 1.08000 * 121.06602 * 0.21427 * 24 23 21 37 37 H 1.07997 * 120.27764 * 180.02562 * 25 24 23 38 38 H 1.08006 * 119.20803 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 2.4955 2.0463 -1.4000 5 1 1.4454 2.6526 0.7001 6 1 3.5455 1.4400 0.7001 7 6 2.0084 -1.2033 -0.0005 8 1 3.0395 -1.2314 -0.3207 9 7 1.3845 -2.3558 0.4057 10 6 1.6026 -3.5002 -0.2634 11 8 2.3534 -3.4797 -1.2191 12 7 1.0284 -4.6650 0.0758 13 6 1.3205 -5.8673 -0.7086 14 6 2.5173 -6.5710 -0.1225 15 6 3.7892 -6.2515 -0.5601 16 6 4.8870 -6.9004 -0.0274 17 6 4.7135 -7.8629 0.9526 18 9 5.7864 -8.4935 1.4783 19 6 3.4395 -8.1782 1.3938 20 6 2.3428 -7.5325 0.8553 21 6 0.1812 -4.7463 1.1256 22 8 -0.3405 -5.8024 1.4268 23 6 -0.0891 -3.5216 1.8975 24 6 -0.9460 -3.5169 2.9973 25 6 -1.1435 -2.3163 3.6593 26 6 -0.4925 -1.1779 3.2134 27 7 0.3136 -1.2074 2.1703 28 6 0.5383 -2.3261 1.5019 29 1 -0.4849 0.8401 -0.0004 30 1 1.5337 -5.5854 -1.7397 31 1 0.4590 -6.5347 -0.6850 32 1 3.9247 -5.4973 -1.3211 33 1 5.8802 -6.6535 -0.3724 34 1 3.3031 -8.9285 2.1586 35 1 1.3490 -7.7787 1.1990 36 1 -1.4402 -4.4205 3.3226 37 1 -1.7990 -2.2684 4.5163 38 1 -0.6495 -0.2436 3.7320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005055074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:00 Heat of formation + Delta-G solvation = -13.023253 kcal Electronic energy + Delta-G solvation = -29566.710998 eV Core-core repulsion = 25289.940523 eV Total energy + Delta-G solvation = -4276.770475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.88641 -41.53522 -39.32364 -38.56616 -38.25890 -35.48395 -34.59544 -32.78847 -31.66768 -31.07359 -31.02123 -29.55420 -26.70058 -25.31294 -23.92236 -23.28545 -22.95862 -21.91879 -21.45998 -18.95561 -18.57808 -18.11910 -17.63506 -16.51984 -16.35128 -16.22170 -15.57059 -15.51013 -15.14127 -14.95202 -14.93859 -14.73292 -14.14967 -13.93686 -13.60651 -13.52793 -13.33460 -13.24416 -13.10007 -12.72386 -12.22525 -12.01029 -11.92393 -11.83123 -11.65438 -11.13002 -11.11710 -10.89104 -10.53047 -10.20470 -9.86747 -9.64657 -9.38725 -9.25414 -9.04351 -8.92810 -8.60724 -8.38941 -7.47949 -6.61073 -4.38788 1.07702 1.27233 1.30621 1.82365 2.80128 2.92445 3.13611 3.18470 3.25348 3.63821 3.74232 3.86928 4.21630 4.27992 4.60972 4.72811 4.82960 4.86643 4.92402 5.06958 5.22476 5.25991 5.37454 5.39622 5.56127 5.62166 5.76336 5.86800 6.00409 6.03421 6.05129 6.08457 6.17191 6.30486 6.39253 6.51886 6.63326 6.92681 6.93471 7.18349 7.36111 7.78942 8.02813 8.09369 8.43406 8.78007 9.05500 9.29991 10.45138 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.004321 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.224572 B = 6478.529315 C = 7666.449430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.083 3.917 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.347 4.347 8 H 0.107 0.893 9 N -0.344 5.344 10 C 0.667 3.333 11 O -0.549 6.549 12 N -0.553 5.553 13 C 0.154 3.846 14 C -0.117 4.117 15 C -0.060 4.060 16 C -0.160 4.160 17 C 0.098 3.902 18 F -0.144 7.144 19 C -0.162 4.162 20 C -0.066 4.066 21 C 0.568 3.432 22 O -0.530 6.530 23 C -0.281 4.281 24 C 0.021 3.979 25 C -0.255 4.255 26 C 0.169 3.831 27 N -0.452 5.452 28 C 0.411 3.589 29 H 0.275 0.725 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 -8.145 3.984 9.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.130 4.130 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.125 0.875 9 N -0.050 5.050 10 C 0.373 3.627 11 O -0.424 6.424 12 N -0.297 5.297 13 C 0.033 3.967 14 C -0.118 4.118 15 C -0.079 4.079 16 C -0.179 4.179 17 C 0.079 3.921 18 F -0.122 7.122 19 C -0.181 4.181 20 C -0.085 4.085 21 C 0.363 3.637 22 O -0.408 6.408 23 C -0.291 4.291 24 C -0.006 4.006 25 C -0.277 4.277 26 C 0.003 3.997 27 N -0.165 5.165 28 C 0.176 3.824 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.311 -7.855 3.118 8.552 hybrid contribution -0.105 0.079 0.440 0.459 sum 1.207 -7.776 3.557 8.636 Atomic orbital electron populations 1.69836 1.06949 1.28882 1.39433 1.25279 0.94985 1.00024 0.92756 0.85842 0.79736 0.80084 0.78349 1.20265 1.20346 1.18931 1.19438 0.96768 0.81767 1.49320 0.87519 1.40503 1.36968 1.07721 1.19817 1.16149 0.83433 0.80030 0.83132 1.90804 1.39355 1.84219 1.28056 1.46424 1.43008 1.09951 1.30288 1.20438 0.95925 0.84615 0.95758 1.20179 0.95210 0.97839 0.98612 1.21205 0.90894 0.97127 0.98652 1.21147 1.00603 0.97806 0.98370 1.17787 0.83378 0.94916 0.96019 1.91476 1.54483 1.80873 1.85414 1.21098 0.91014 1.03156 1.02851 1.21111 0.99107 0.94153 0.94108 1.18294 0.77555 0.88823 0.79044 1.90682 1.51249 1.30611 1.68231 1.20022 1.11122 0.93194 1.04750 1.21074 0.91098 0.98142 0.90238 1.21756 1.07408 0.93903 1.04658 1.22789 0.89343 0.97533 0.90009 1.67422 1.17421 1.25813 1.05891 1.18570 0.89900 0.87894 0.86023 0.91429 0.87520 0.87927 0.83848 0.84753 0.84860 0.84275 0.84588 0.85304 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.11 11.38 55.49 0.63 -20.47 16 2 C 0.08 2.07 4.26 -17.48 -0.07 2.00 16 3 Si 0.93 19.56 29.60 -169.99 -5.03 14.53 16 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 7 C -0.35 -9.06 8.60 -14.89 -0.13 -9.19 16 8 H 0.11 2.80 7.76 -52.49 -0.41 2.39 16 9 N -0.34 -8.64 2.71 -65.74 -0.18 -8.82 16 10 C 0.67 15.66 8.05 -87.80 -0.71 14.95 16 11 O -0.55 -13.37 14.66 5.32 0.08 -13.29 16 12 N -0.55 -11.20 2.54 -123.44 -0.31 -11.51 16 13 C 0.15 2.53 5.18 -5.19 -0.03 2.50 16 14 C -0.12 -1.81 5.46 -104.61 -0.57 -2.38 16 15 C -0.06 -0.91 9.61 -39.59 -0.38 -1.29 16 16 C -0.16 -2.22 10.03 -39.52 -0.40 -2.62 16 17 C 0.10 1.37 7.30 -39.42 -0.29 1.08 16 18 F -0.14 -1.99 17.27 2.25 0.04 -1.95 16 19 C -0.16 -2.15 10.03 -39.51 -0.40 -2.55 16 20 C -0.07 -0.94 9.70 -39.60 -0.38 -1.33 16 21 C 0.57 11.58 7.64 -12.43 -0.09 11.49 16 22 O -0.53 -10.51 15.78 5.28 0.08 -10.42 16 23 C -0.28 -5.86 5.89 -104.86 -0.62 -6.47 16 24 C 0.02 0.36 9.78 -39.04 -0.38 -0.02 16 25 C -0.25 -3.95 10.10 -39.37 -0.40 -4.35 16 26 C 0.17 2.99 11.14 -17.44 -0.19 2.80 16 27 N -0.45 -10.14 7.02 -12.10 -0.08 -10.22 16 28 C 0.41 9.62 6.65 -155.05 -1.03 8.58 16 29 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.11 1.70 7.25 -51.93 -0.38 1.32 16 31 H 0.10 1.51 7.36 -51.93 -0.38 1.13 16 32 H 0.14 2.23 7.39 -52.49 -0.39 1.85 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.14 1.91 7.59 -52.49 -0.40 1.51 16 36 H 0.14 2.05 7.86 -52.49 -0.41 1.63 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.15 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -29.51 337.44 -8.95 -38.46 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.19 Total: 5.40 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: -6.07 Total: 13.21 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.06 Total: -51.02 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.16 Total: -23.71 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.51 -8.95 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005055074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.435 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds