Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99974 * 2 1 4 4 H 1.48498 * 109.46974 * 239.99910 * 3 2 1 5 5 H 1.48497 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46896 * 120.00211 * 3 2 1 7 7 C 1.38685 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99900 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.76200 * 100.00163 * 180.02562 * 9 7 2 11 11 N 1.31234 * 126.37565 * 359.97438 * 10 9 7 12 12 N 1.28662 * 109.28420 * 180.02562 * 11 10 9 13 13 C 1.30262 * 109.53381 * 0.02562 * 12 11 10 14 14 C 1.50703 * 126.19346 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47323 * 90.02414 * 14 13 12 16 16 C 1.34777 * 120.00254 * 179.97438 * 15 14 13 17 17 O 1.21582 * 119.99625 * 359.97438 * 16 15 14 18 18 C 1.47534 * 120.00174 * 179.97438 * 16 15 14 19 19 C 1.39909 * 120.18578 * 89.72070 * 18 16 15 20 20 F 1.35101 * 120.09591 * 0.02562 * 19 18 16 21 21 C 1.38220 * 119.80251 * 179.79240 * 19 18 16 22 22 C 1.38301 * 120.19164 * 0.48717 * 21 19 18 23 23 C 1.38304 * 120.38554 * 359.74479 * 22 21 19 24 24 C 1.38213 * 120.18748 * 0.02562 * 23 22 21 25 25 F 1.35106 * 120.09355 * 179.97438 * 24 23 22 26 26 O 1.34620 * 107.60550 * 359.97438 * 13 12 11 27 27 H 0.96998 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46932 * 210.01768 * 14 13 12 29 29 H 1.08997 * 109.47062 * 330.01744 * 14 13 12 30 30 H 0.97003 * 119.99502 * 359.97438 * 15 14 13 31 31 H 1.08008 * 119.90288 * 180.25739 * 21 19 18 32 32 H 1.08005 * 119.80847 * 179.76976 * 22 21 19 33 33 H 1.07996 * 119.90443 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0096 -1.2011 -0.0005 8 1 3.0897 -1.2011 -0.0001 9 16 1.1286 -2.7270 -0.0005 10 6 2.4783 -3.8596 -0.0005 11 7 3.7538 -3.5505 -0.0010 12 7 4.4527 -4.6307 -0.0014 13 6 3.6587 -5.6634 -0.0017 14 6 4.0803 -7.1102 -0.0028 15 7 4.2169 -7.5801 1.3781 16 6 4.5871 -8.8526 1.6235 17 8 4.8072 -9.6106 0.6988 18 6 4.7252 -9.3256 3.0141 19 6 3.6282 -9.8836 3.6796 20 9 2.4375 -9.9918 3.0505 21 6 3.7676 -10.3281 4.9809 22 6 4.9842 -10.2134 5.6285 23 6 6.0725 -9.6587 4.9798 24 6 5.9521 -9.2134 3.6770 25 9 7.0163 -8.6713 3.0452 26 8 2.3933 -5.2039 -0.0010 27 1 -0.4849 0.8401 0.0004 28 1 3.3274 -7.7076 -0.5170 29 1 5.0363 -7.2097 -0.5167 30 1 4.0408 -6.9753 2.1158 31 1 2.9229 -10.7629 5.4948 32 1 5.0852 -10.5594 6.6467 33 1 7.0188 -9.5725 5.4931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005107628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = -58.953440 kcal Electronic energy + Delta-G solvation = -25340.276996 eV Core-core repulsion = 20937.665391 eV Total energy + Delta-G solvation = -4402.611605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.043 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.49393 -49.47140 -43.29999 -40.23636 -38.72480 -35.41243 -35.32783 -32.92663 -32.22634 -30.92274 -30.80116 -27.43112 -25.87402 -24.46442 -23.38287 -23.25627 -21.96032 -21.16048 -18.95190 -18.58476 -18.26265 -17.80484 -17.14278 -16.71166 -16.51297 -16.14150 -15.94459 -15.84666 -15.75577 -15.60251 -15.15193 -14.91364 -14.86774 -14.44945 -13.67012 -13.33576 -13.28078 -13.04262 -12.55528 -12.44356 -12.36802 -11.75290 -11.65449 -11.37218 -11.28407 -11.05029 -10.65710 -10.57682 -10.34073 -10.02855 -9.63884 -9.48743 -9.32971 -9.22518 -9.16751 -7.18113 -6.71548 -4.50682 0.21259 0.40760 1.50742 1.87197 2.08388 2.60559 2.78222 3.08217 3.10912 3.13945 3.16207 3.23789 3.37489 3.81559 3.81696 4.03555 4.24065 4.25831 4.52658 4.54498 4.73995 4.79429 5.05981 5.16756 5.20019 5.32760 5.39870 5.41418 5.56181 5.84216 5.89935 5.97029 6.08451 6.11078 7.02337 7.33338 7.70761 8.10682 8.79414 8.93956 10.35613 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002315 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.054998 B =12091.778169 C =12136.179640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.082 3.918 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.109 0.891 9 S 0.225 5.775 10 C 0.141 3.859 11 N -0.318 5.318 12 N -0.247 5.247 13 C 0.072 3.928 14 C 0.235 3.765 15 N -0.711 5.711 16 C 0.572 3.428 17 O -0.516 6.516 18 C -0.201 4.201 19 C 0.166 3.834 20 F -0.119 7.119 21 C -0.165 4.165 22 C -0.043 4.043 23 C -0.165 4.165 24 C 0.167 3.833 25 F -0.118 7.118 26 O -0.219 6.219 27 H 0.280 0.720 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.409 0.591 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 -19.258 11.823 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.129 4.129 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.704 4.704 8 H 0.127 0.873 9 S 0.460 5.540 10 C -0.170 4.170 11 N -0.173 5.173 12 N -0.097 5.097 13 C -0.146 4.146 14 C 0.111 3.889 15 N -0.364 5.364 16 C 0.356 3.644 17 O -0.391 6.391 18 C -0.206 4.206 19 C 0.146 3.854 20 F -0.097 7.097 21 C -0.184 4.184 22 C -0.061 4.061 23 C -0.184 4.184 24 C 0.146 3.854 25 F -0.096 7.096 26 O -0.103 6.103 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.244 0.756 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.447 -19.057 11.047 22.952 hybrid contribution 0.549 0.902 0.088 1.060 sum 6.996 -18.155 11.135 22.417 Atomic orbital electron populations 1.69908 1.06191 1.29332 1.45022 1.25128 0.95251 0.99845 0.92686 0.85862 0.79068 0.78913 0.79779 1.19148 1.20496 1.19168 1.23365 0.97775 0.89158 1.60139 0.87272 1.83992 0.94878 0.93216 1.81899 1.31671 1.02711 0.83068 0.99563 1.74995 0.99761 1.18460 1.24037 1.74045 1.28775 0.94752 1.12172 1.27022 0.78666 0.98420 1.10446 1.19315 1.03342 0.82740 0.83484 1.46031 1.69232 1.12002 1.09167 1.17650 0.77197 0.81855 0.87672 1.90852 1.48932 1.54727 1.44569 1.19869 0.94295 1.09886 0.96522 1.17324 0.80013 0.97366 0.90714 1.91604 1.42687 1.93311 1.82084 1.21215 1.00300 1.03854 0.93046 1.21039 0.90614 0.94327 1.00169 1.21214 1.01709 1.02503 0.93001 1.17322 0.82334 0.95030 0.90670 1.91609 1.53403 1.82668 1.81958 1.84902 1.31484 1.21654 1.72287 0.90970 0.88226 0.86912 0.75614 0.83123 0.83214 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.02 13.22 55.48 0.73 -22.29 16 2 C 0.08 2.11 5.49 -17.48 -0.10 2.01 16 3 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.56 -14.74 9.37 30.90 0.29 -14.45 16 8 H 0.11 2.96 6.92 -52.48 -0.36 2.60 16 9 S 0.23 5.41 21.89 -107.50 -2.35 3.06 16 10 C 0.14 3.24 8.52 52.51 0.45 3.69 16 11 N -0.32 -7.61 11.06 30.32 0.34 -7.27 16 12 N -0.25 -5.22 12.21 32.60 0.40 -4.82 16 13 C 0.07 1.30 7.84 -12.94 -0.10 1.20 16 14 C 0.24 3.26 6.30 -5.19 -0.03 3.23 16 15 N -0.71 -9.26 5.55 -62.53 -0.35 -9.61 16 16 C 0.57 7.78 6.54 -12.47 -0.08 7.70 16 17 O -0.52 -8.49 17.11 5.29 0.09 -8.40 16 18 C -0.20 -2.21 5.64 -104.86 -0.59 -2.80 16 19 C 0.17 1.58 7.29 -38.96 -0.28 1.30 16 20 F -0.12 -1.32 16.83 2.25 0.04 -1.28 16 21 C -0.17 -1.01 10.01 -39.56 -0.40 -1.40 16 22 C -0.04 -0.20 10.03 -39.53 -0.40 -0.59 16 23 C -0.17 -1.01 10.01 -39.57 -0.40 -1.41 16 24 C 0.17 1.60 7.29 -38.97 -0.28 1.31 16 25 F -0.12 -1.34 16.83 2.25 0.04 -1.30 16 26 O -0.22 -4.43 10.90 3.75 0.04 -4.39 16 27 H 0.28 6.88 8.31 -40.82 -0.34 6.55 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.41 4.95 8.45 -40.82 -0.34 4.60 16 31 H 0.15 0.57 8.06 -52.48 -0.42 0.14 16 32 H 0.15 0.18 8.06 -52.48 -0.42 -0.24 16 33 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -31.73 334.94 -4.88 -36.61 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -1.96 Total: -0.25 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.92 Total: -0.22 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.12 Total: -43.99 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.13 Total: -12.79 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -2.35 Total: 3.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.73 -4.88 -36.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005107628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.343 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds