Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35948 * 117.00099 * 2 1 4 4 C 1.38044 * 119.99762 * 359.97438 * 3 2 1 5 5 C 1.40042 * 119.83522 * 179.97438 * 4 3 2 6 6 C 1.46846 * 120.08446 * 180.02562 * 5 4 3 7 7 C 1.35275 * 120.00148 * 179.97438 * 6 5 4 8 8 C 1.41810 * 119.99808 * 179.97438 * 7 6 5 9 9 O 1.21793 * 120.00497 * 359.97438 * 8 7 6 10 10 C 1.47694 * 119.99851 * 179.97438 * 8 7 6 11 11 C 1.39762 * 120.09093 * 359.72094 * 10 8 7 12 12 C 1.37689 * 119.91399 * 179.76297 * 11 10 8 13 13 C 1.39014 * 120.08704 * 0.51839 * 12 11 10 14 14 O 1.35722 * 119.91016 * 179.71865 * 13 12 11 15 15 C 1.39012 * 120.18113 * 359.73132 * 13 12 11 16 16 C 1.37695 * 120.08860 * 0.02562 * 15 13 12 17 17 C 1.40102 * 119.83583 * 359.97438 * 5 4 3 18 18 C 1.37611 * 119.99572 * 0.02562 * 17 5 4 19 19 C 1.39098 * 120.16229 * 0.26027 * 18 17 5 20 20 O 1.35586 * 119.91572 * 179.74635 * 19 18 17 21 21 C 1.34747 * 116.99970 * 354.36785 * 20 19 18 22 22 H 1.07991 * 119.99803 * 5.07172 * 21 20 19 23 23 C 1.38738 * 119.99774 * 185.06485 * 21 20 19 24 24 N 1.31497 * 120.00341 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99741 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46923 * 90.00521 * 25 23 21 27 27 H 1.48496 * 109.47205 * 210.00401 * 25 23 21 28 28 H 1.48499 * 109.47124 * 330.00712 * 25 23 21 29 29 H 1.08995 * 109.47183 * 60.00172 * 1 2 3 30 30 H 1.09002 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46768 * 299.99962 * 1 2 3 32 32 H 1.08006 * 120.08165 * 359.95524 * 4 3 2 33 33 H 1.08001 * 120.00204 * 359.97331 * 6 5 4 34 34 H 1.07991 * 119.99655 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.03959 * 0.02562 * 11 10 8 36 36 H 1.07995 * 119.95776 * 180.23325 * 12 11 10 37 37 H 0.96698 * 114.00004 * 270.01397 * 14 13 12 38 38 H 1.07998 * 119.96324 * 179.97438 * 15 13 12 39 39 H 1.07998 * 120.04997 * 179.97438 * 16 15 13 40 40 H 1.07995 * 120.00601 * 180.02562 * 17 5 4 41 41 H 1.08001 * 119.92325 * 179.97438 * 18 17 5 42 42 H 0.97004 * 120.00078 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2944 2.3690 -0.0005 5 6 1.9337 3.6150 0.0000 6 6 1.1393 4.8500 0.0000 7 6 1.7586 6.0526 0.0011 8 6 0.9913 7.2452 0.0005 9 8 -0.2252 7.1868 -0.0014 10 6 1.6675 8.5583 0.0022 11 6 3.0633 8.6277 0.0103 12 6 3.6899 9.8537 0.0069 13 6 2.9360 11.0217 0.0064 14 8 3.5574 12.2283 0.0089 15 6 1.5474 10.9571 0.0037 16 6 0.9132 9.7349 0.0020 17 6 3.3332 3.6803 0.0016 18 6 4.0760 2.5219 0.0022 19 6 3.4409 1.2844 -0.0044 20 8 4.1776 0.1462 -0.0090 21 6 5.5132 0.2825 -0.1248 22 1 5.9574 1.2668 -0.1261 23 6 6.3176 -0.8418 -0.2422 24 7 5.7766 -2.0404 -0.2410 25 14 8.1691 -0.6529 -0.4021 26 1 8.7856 -0.6584 0.9489 27 1 8.7147 -1.7804 -1.1997 28 1 8.4789 0.6303 -1.0823 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2157 2.3140 -0.0017 33 1 0.0605 4.7982 -0.0008 34 1 2.8373 6.1044 0.0023 35 1 3.6497 7.7207 0.0149 36 1 4.7685 9.9081 0.0093 37 1 3.7358 12.5770 0.8930 38 1 0.9652 11.8667 0.0037 39 1 -0.1657 9.6855 0.0003 40 1 3.8291 4.6397 0.0025 41 1 5.1548 2.5736 0.0030 42 1 6.3391 -2.8264 -0.3235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005128134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -67.896391 kcal Electronic energy + Delta-G solvation = -27022.464172 eV Core-core repulsion = 22899.907684 eV Total energy + Delta-G solvation = -4122.556488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33477 -39.78360 -38.96446 -37.76418 -36.77973 -36.52169 -33.23977 -32.42613 -31.34781 -30.56940 -29.79103 -28.69450 -26.71563 -25.73556 -24.56448 -23.19575 -22.50918 -21.82095 -20.70099 -18.96797 -18.69981 -18.28989 -17.88324 -16.92092 -16.43135 -15.81862 -15.71582 -15.44010 -15.26812 -15.00074 -14.70536 -14.44419 -14.33834 -14.06250 -13.92469 -13.68395 -13.65649 -13.50535 -12.83779 -12.54687 -12.31371 -12.28540 -12.07359 -11.86979 -11.75500 -11.52962 -11.17205 -11.08936 -10.84498 -10.78467 -10.73262 -10.56658 -9.72690 -9.64331 -9.47572 -9.33700 -8.96698 -8.87980 -8.06189 -6.99285 -6.71234 -4.20538 0.25883 1.02172 1.07591 2.05226 2.33872 2.98179 3.00418 3.06139 3.11153 3.69575 3.76072 3.86674 3.88033 4.21874 4.39110 4.55206 4.65156 4.81479 4.92555 5.01305 5.09809 5.18201 5.22768 5.40873 5.45877 5.49689 5.52371 5.59329 5.67057 5.70662 5.79031 5.92434 5.96401 6.06131 6.10932 6.14753 6.37616 6.41148 6.47158 6.52993 6.78822 6.93359 7.00687 7.18188 7.25655 7.39349 7.69387 7.76397 8.00881 8.71449 9.39541 10.44035 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.002314 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.626471 B =12095.743833 C =14413.698209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.178 4.178 6 C 0.056 3.944 7 C -0.311 4.311 8 C 0.428 3.572 9 O -0.487 6.487 10 C -0.161 4.161 11 C -0.057 4.057 12 C -0.158 4.158 13 C 0.126 3.874 14 O -0.500 6.500 15 C -0.160 4.160 16 C -0.052 4.052 17 C -0.051 4.051 18 C -0.228 4.228 19 C 0.151 3.849 20 O -0.142 6.142 21 C -0.390 4.390 22 H 0.099 0.901 23 C 0.042 3.958 24 N -0.840 5.840 25 Si 0.946 3.054 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.264 1.264 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.393 0.607 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 18.476 1.969 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.153 4.153 5 C -0.179 4.179 6 C 0.037 3.963 7 C -0.330 4.330 8 C 0.315 3.685 9 O -0.370 6.370 10 C -0.162 4.162 11 C -0.075 4.075 12 C -0.177 4.177 13 C 0.082 3.918 14 O -0.311 6.311 15 C -0.179 4.179 16 C -0.070 4.070 17 C -0.069 4.069 18 C -0.247 4.247 19 C 0.093 3.907 20 O -0.042 6.042 21 C -0.465 4.465 22 H 0.117 0.883 23 C -0.166 4.166 24 N -0.471 5.471 25 Si 0.770 3.230 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.188 1.188 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.250 0.750 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.418 17.643 1.356 18.506 hybrid contribution 0.884 0.420 0.417 1.064 sum -4.533 18.064 1.773 18.708 Atomic orbital electron populations 1.22925 0.80094 1.03139 1.00437 1.86235 1.19634 1.26150 1.89703 1.18034 0.89355 0.84652 1.07357 1.20903 0.98623 0.90919 1.04809 1.18197 0.92875 0.91444 1.15398 1.22520 0.99156 0.91367 0.83226 1.22071 1.01147 0.92974 1.16844 1.19045 0.88289 0.88518 0.72637 1.90621 1.16035 1.89953 1.40347 1.20715 0.94296 0.95515 1.05652 1.21414 0.93570 0.97964 0.94555 1.21430 1.00795 0.91795 1.03670 1.18756 0.90367 0.84875 0.97830 1.84759 1.79659 1.32968 1.33701 1.21396 0.93835 0.98581 1.04046 1.21265 1.00763 0.90791 0.94158 1.20966 0.92471 0.97411 0.96085 1.20834 1.00763 0.90705 1.12421 1.18916 0.88263 0.87593 0.95929 1.83970 1.19830 1.26037 1.74350 1.21580 0.78279 0.95231 1.51370 0.88324 1.25460 1.01095 0.94107 0.95931 1.70035 1.36879 0.97940 1.42262 0.85622 0.79578 0.78839 0.78962 1.19532 1.19960 1.18808 0.93401 0.88914 0.93427 0.85794 0.85927 0.85471 0.84288 0.84818 0.75011 0.85021 0.84535 0.86491 0.84414 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.30 10.28 -34.19 -0.35 -6.65 16 3 C 0.05 1.06 6.70 -39.12 -0.26 0.80 16 4 C -0.13 -2.32 8.78 -38.98 -0.34 -2.66 16 5 C -0.18 -2.97 5.87 -105.04 -0.62 -3.59 16 6 C 0.06 0.83 9.41 -37.16 -0.35 0.48 16 7 C -0.31 -4.22 8.73 -39.27 -0.34 -4.56 16 8 C 0.43 6.01 6.90 -34.36 -0.24 5.77 16 9 O -0.49 -7.99 16.11 5.11 0.08 -7.91 16 10 C -0.16 -1.92 5.88 -104.89 -0.62 -2.54 16 11 C -0.06 -0.57 9.43 -39.21 -0.37 -0.94 16 12 C -0.16 -1.45 9.97 -39.49 -0.39 -1.84 16 13 C 0.13 1.17 6.71 -39.01 -0.26 0.90 16 14 O -0.50 -3.89 13.49 -18.87 -0.25 -4.14 16 15 C -0.16 -1.49 9.97 -39.49 -0.39 -1.89 16 16 C -0.05 -0.56 9.59 -39.21 -0.38 -0.94 16 17 C -0.05 -0.86 9.40 -39.11 -0.37 -1.23 16 18 C -0.23 -4.55 9.14 -39.49 -0.36 -4.91 16 19 C 0.15 3.49 6.67 -38.73 -0.26 3.23 16 20 O -0.14 -3.88 9.52 -13.82 -0.13 -4.01 16 21 C -0.39 -10.16 9.48 30.92 0.29 -9.87 16 22 H 0.10 2.32 5.18 -52.49 -0.27 2.04 16 23 C 0.04 1.07 5.50 -17.51 -0.10 0.98 16 24 N -0.84 -23.30 13.67 55.48 0.76 -22.54 16 25 Si 0.95 19.00 29.55 -169.99 -5.02 13.98 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 29 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.12 1.80 6.28 -52.48 -0.33 1.47 16 33 H 0.12 1.74 7.45 -52.49 -0.39 1.35 16 34 H 0.13 1.49 4.23 -52.49 -0.22 1.27 16 35 H 0.14 1.20 6.19 -52.49 -0.33 0.87 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.39 1.10 9.06 45.56 0.41 1.51 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.44 7.64 -52.49 -0.40 1.04 16 40 H 0.12 1.61 6.15 -52.49 -0.32 1.29 16 41 H 0.14 2.66 5.61 -52.49 -0.29 2.37 16 42 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -32.57 367.57 -7.09 -39.65 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.34 Total: 7.48 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -4.36 Total: -21.40 kcal Atomic # 7 Polarization: -23.30 SS G_CDS: 0.76 Total: -22.54 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.66 Total: -22.71 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.57 -7.09 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005128134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.243 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds