Wall clock time and date at job start Tue Mar 31 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35700 * 117.00364 * 2 1 4 4 C 1.39051 * 119.90154 * 0.02562 * 3 2 1 5 5 C 1.37649 * 120.09396 * 179.97438 * 4 3 2 6 6 C 1.39842 * 119.90371 * 0.02562 * 5 4 3 7 7 C 1.47421 * 120.09340 * 180.27783 * 6 5 4 8 8 O 1.21536 * 119.99676 * 179.72599 * 7 6 5 9 9 O 1.34771 * 120.00042 * 359.71494 * 7 6 5 10 10 C 1.34860 * 116.99998 * 179.97438 * 9 7 6 11 11 H 1.08008 * 119.99756 * 0.02562 * 10 9 7 12 12 C 1.38793 * 120.00027 * 180.02562 * 10 9 7 13 13 N 1.31422 * 119.99961 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99885 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46949 * 89.99951 * 14 12 10 16 16 H 1.48498 * 109.46949 * 209.99818 * 14 12 10 17 17 H 1.48495 * 109.47258 * 330.00048 * 14 12 10 18 18 C 1.39800 * 119.81083 * 359.97438 * 6 5 4 19 19 C 1.37690 * 119.90316 * 0.02562 * 18 6 5 20 20 S 1.76201 * 119.95524 * 180.02562 * 19 18 6 21 21 O 1.42104 * 106.40446 * 228.84577 * 20 19 18 22 22 O 1.42105 * 106.39942 * 1.76066 * 20 19 18 23 23 N 1.65592 * 107.22091 * 115.30014 * 20 19 18 24 24 C 1.46507 * 120.00145 * 296.38137 * 23 20 19 25 25 C 1.52992 * 117.49985 * 213.41704 * 24 23 20 26 26 C 1.53001 * 117.49716 * 144.79270 * 24 23 20 27 27 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47356 * 300.00153 * 1 2 3 29 29 H 1.09005 * 109.46684 * 59.99697 * 1 2 3 30 30 H 1.08000 * 119.94925 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.04514 * 180.02562 * 5 4 3 32 32 H 0.97003 * 120.00155 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.05190 * 179.97438 * 18 6 5 34 34 H 0.96998 * 120.00329 * 116.37728 * 23 20 19 35 35 H 1.08999 * 115.54715 * 359.12782 * 24 23 20 36 36 H 1.09004 * 117.49973 * 359.97438 * 25 24 23 37 37 H 1.08999 * 117.49954 * 145.02371 * 25 24 23 38 38 H 1.09006 * 117.49418 * 214.97823 * 26 24 23 39 39 H 1.08995 * 117.50290 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2859 2.3740 0.0005 5 6 1.9068 3.6025 0.0011 6 6 3.3031 3.6779 0.0005 7 6 3.9724 4.9914 0.0073 8 8 5.1861 5.0549 0.0118 9 8 3.2385 6.1217 0.0082 10 6 3.9128 7.2896 0.0150 11 1 4.9929 7.2895 0.0191 12 6 3.2189 8.4916 0.0169 13 7 3.8760 9.6297 0.0230 14 14 1.3509 8.4917 0.0106 15 1 0.8512 8.4868 1.4090 16 1 0.8583 9.7066 -0.6868 17 1 0.8582 7.2817 -0.6952 18 6 4.0626 2.5042 0.0000 19 6 3.4333 1.2795 -0.0005 20 16 4.3892 -0.2007 -0.0005 21 8 3.8536 -1.0243 -1.0273 22 8 5.7515 0.2013 0.0420 23 7 4.0867 -0.9796 1.4291 24 6 4.4639 -0.3532 2.6987 25 6 4.9088 -1.2744 3.8363 26 6 3.5453 -0.5834 3.9004 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2075 2.3147 0.0005 31 1 1.3163 4.5068 0.0019 32 1 3.3911 10.4698 0.0247 33 1 5.1412 2.5579 -0.0008 34 1 3.6598 -1.8506 1.4261 35 1 4.9519 0.6180 2.6169 36 1 4.9205 -2.3466 3.6403 37 1 5.6899 -0.9094 4.5032 38 1 3.4294 0.2364 4.6095 39 1 2.6601 -1.2004 3.7464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005141687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:42 Heat of formation + Delta-G solvation = -126.276410 kcal Electronic energy + Delta-G solvation = -27668.114391 eV Core-core repulsion = 23477.211301 eV Total energy + Delta-G solvation = -4190.903089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.55199 -39.28688 -38.01506 -37.52675 -37.02676 -35.86711 -35.36692 -32.46829 -32.34140 -31.70593 -30.53919 -27.90503 -25.74455 -23.62453 -23.02351 -22.63127 -22.31558 -20.64932 -19.69048 -18.78620 -18.09293 -17.81886 -17.44827 -16.92463 -16.38612 -16.15692 -15.88820 -15.21491 -15.10938 -14.85207 -14.79075 -14.54169 -14.20832 -13.93808 -13.22763 -13.03625 -12.99116 -12.55016 -12.47206 -12.39329 -12.19871 -12.15741 -12.06135 -12.00120 -11.80835 -11.76351 -11.61084 -11.21503 -10.77945 -10.68472 -10.61122 -10.50215 -9.81195 -9.60015 -9.37089 -9.29101 -8.79758 -8.54262 -6.48804 -4.20374 0.30883 0.69829 0.97388 2.69453 2.78280 2.96522 3.13803 3.15019 3.24462 3.51163 3.69789 3.89843 3.96559 4.13039 4.33434 4.50613 4.54059 4.61695 4.68226 4.71218 4.81562 4.86614 4.90868 5.03244 5.14302 5.21155 5.26415 5.37416 5.44523 5.61325 5.63218 5.82468 5.92691 5.95508 6.21754 6.31132 6.51113 6.71307 6.87766 7.61184 7.92781 8.51709 8.88151 9.54946 10.59081 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.003438 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.928328 B = 8142.776147 C = 8704.008679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.236 3.764 4 C -0.236 4.236 5 C 0.015 3.985 6 C -0.140 4.140 7 C 0.447 3.553 8 O -0.532 6.532 9 O -0.244 6.244 10 C -0.374 4.374 11 H 0.113 0.887 12 C 0.066 3.934 13 N -0.866 5.866 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.260 1.260 18 C 0.062 3.938 19 C -0.717 4.717 20 S 2.709 3.291 21 O -0.949 6.949 22 O -0.952 6.952 23 N -1.083 6.083 24 C 0.084 3.916 25 C -0.185 4.185 26 C -0.190 4.190 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.282 0.718 33 H 0.164 0.836 34 H 0.418 0.582 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.275 -22.632 5.834 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.187 3.813 4 C -0.255 4.255 5 C -0.003 4.003 6 C -0.143 4.143 7 C 0.294 3.706 8 O -0.428 6.428 9 O -0.152 6.152 10 C -0.450 4.450 11 H 0.130 0.870 12 C -0.139 4.139 13 N -0.504 5.504 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.184 1.184 18 C 0.042 3.958 19 C -0.804 4.804 20 S 2.797 3.203 21 O -0.939 6.939 22 O -0.942 6.942 23 N -0.839 5.839 24 C -0.024 4.024 25 C -0.224 4.224 26 C -0.230 4.230 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.252 0.748 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.277 -22.649 5.134 24.654 hybrid contribution -1.854 0.636 0.312 1.984 sum -10.131 -22.013 5.446 24.836 Atomic orbital electron populations 1.23215 0.76933 1.04660 1.02151 1.86029 1.22808 1.26350 1.86877 1.18456 0.90296 0.84802 0.87727 1.21257 1.00502 0.91802 1.11922 1.21654 0.93903 0.98031 0.86730 1.19369 0.93461 0.92003 1.09437 1.20206 0.85834 0.84383 0.80157 1.90710 1.14643 1.87417 1.49995 1.83508 1.40564 1.14477 1.76691 1.20734 0.94233 0.78915 1.51078 0.86952 1.24571 1.00292 0.93454 0.95568 1.69590 1.36959 0.97441 1.46433 0.86227 0.83433 0.78373 0.78966 1.19703 1.20539 1.18438 1.20914 1.01349 0.88426 0.85084 1.29967 1.03749 1.19372 1.27341 1.01529 0.73601 0.73031 0.72106 1.93602 1.80326 1.66515 1.53456 1.93616 1.31442 1.83172 1.85952 1.55082 1.77067 1.31270 1.20515 1.21359 1.03025 0.98232 0.79806 1.23361 0.98328 0.99233 1.01483 1.23407 0.94567 1.03964 1.01029 0.87567 0.91911 0.91795 0.84078 0.83427 0.90788 0.81905 0.74766 0.84334 0.88325 0.87736 0.87870 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.33 9.27 -28.35 -0.26 -3.59 16 3 C 0.24 3.04 6.65 -39.00 -0.26 2.78 16 4 C -0.24 -2.90 9.01 -39.49 -0.36 -3.26 16 5 C 0.02 0.24 9.61 -39.20 -0.38 -0.14 16 6 C -0.14 -2.62 5.87 -104.97 -0.62 -3.23 16 7 C 0.45 10.70 7.83 34.47 0.27 10.97 16 8 O -0.53 -14.29 15.59 -19.29 -0.30 -14.59 16 9 O -0.24 -6.28 7.81 -21.76 -0.17 -6.45 16 10 C -0.37 -10.89 10.11 30.94 0.31 -10.58 16 11 H 0.11 3.62 7.09 -52.48 -0.37 3.25 16 12 C 0.07 1.83 5.49 -17.52 -0.10 1.74 16 13 N -0.87 -24.99 13.96 55.49 0.77 -24.22 16 14 Si 0.90 20.43 28.62 -169.99 -4.86 15.56 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 18 C 0.06 1.04 9.09 -39.20 -0.36 0.69 16 19 C -0.72 -10.37 5.86 -39.50 -0.23 -10.60 16 20 S 2.71 36.53 5.28 -107.50 -0.57 35.96 16 21 O -0.95 -14.67 17.31 -62.44 -1.08 -15.75 16 22 O -0.95 -15.42 16.75 -57.17 -0.96 -16.37 16 23 N -1.08 -10.47 6.04 -4.89 -0.03 -10.50 16 24 C 0.08 0.77 6.47 -67.93 -0.44 0.33 16 25 C -0.18 -1.33 10.46 -26.73 -0.28 -1.61 16 26 C -0.19 -1.37 10.46 -26.73 -0.28 -1.65 16 27 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 29 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 30 H 0.14 1.24 6.28 -52.49 -0.33 0.91 16 31 H 0.15 2.20 7.60 -52.49 -0.40 1.80 16 32 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.16 2.84 6.91 -52.49 -0.36 2.47 16 34 H 0.42 3.08 8.96 -34.47 -0.31 2.78 16 35 H 0.14 1.33 8.11 -51.93 -0.42 0.91 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -36.42 357.92 -8.02 -44.44 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.24 Total: 3.53 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.72 Total: -13.41 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.74 Total: -34.71 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -2.77 Total: -56.76 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.86 Total: 15.56 kcal Atomic # 16 Polarization: 36.53 SS G_CDS: -0.57 Total: 35.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.42 -8.02 -44.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005141687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.835 kcal (2) G-P(sol) polarization free energy of solvation -36.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds