Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 119.99445 * 2 1 4 4 C 1.38219 * 119.99599 * 179.78949 * 3 2 1 5 5 C 1.38254 * 119.99785 * 0.44032 * 4 3 2 6 6 C 1.38217 * 120.00413 * 359.81340 * 5 4 3 7 7 C 1.38210 * 120.00156 * 180.27300 * 2 1 3 8 8 C 1.50701 * 120.00041 * 359.97438 * 7 2 1 9 9 S 1.81399 * 109.47112 * 89.99743 * 8 7 2 10 10 C 1.81399 * 102.99794 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47013 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00136 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.39241 * 120.00012 * 175.70873 * 13 11 10 15 15 C 1.39482 * 119.83309 * 215.01374 * 14 13 11 16 16 C 1.36379 * 120.16686 * 179.75797 * 15 14 13 17 17 C 1.40868 * 119.82782 * 0.52186 * 16 15 14 18 18 C 1.41148 * 120.16426 * 179.71938 * 17 16 15 19 19 H 1.08004 * 120.00012 * 214.79777 * 18 17 16 20 20 C 1.39912 * 119.99965 * 34.79393 * 18 17 16 21 21 N 1.30870 * 119.99877 * 355.56422 * 20 18 17 22 22 Si 1.86804 * 119.99607 * 175.56249 * 20 18 17 23 23 H 1.48497 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46632 * 120.00486 * 22 20 18 25 25 H 1.48494 * 109.46934 * 239.99923 * 22 20 18 26 26 C 1.40863 * 119.67191 * 359.73100 * 17 16 15 27 27 C 1.36382 * 119.83169 * 0.02562 * 26 17 16 28 28 H 1.09003 * 109.47048 * 269.72619 * 1 2 3 29 29 H 1.09000 * 109.47490 * 29.72772 * 1 2 3 30 30 H 1.09000 * 109.47090 * 149.72541 * 1 2 3 31 31 H 1.07997 * 120.00602 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.00146 * 180.27490 * 4 3 2 33 33 H 1.08006 * 119.99911 * 179.83358 * 5 4 3 34 34 H 1.07998 * 120.00583 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47053 * 210.00555 * 8 7 2 36 36 H 1.09003 * 109.46890 * 329.99724 * 8 7 2 37 37 H 1.08994 * 109.47563 * 300.00567 * 10 9 8 38 38 H 1.09001 * 109.46923 * 60.00451 * 10 9 8 39 39 H 0.97001 * 119.99985 * 355.71637 * 13 11 10 40 40 H 1.08000 * 119.91849 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.08112 * 180.24844 * 16 15 14 42 42 H 0.97000 * 119.99312 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.08604 * 179.97438 * 26 17 16 44 44 H 1.07997 * 119.91317 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0044 5 6 4.2716 0.0002 -0.0004 6 6 3.5806 -1.1969 -0.0057 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0113 9 16 1.1416 -3.0179 -1.7238 10 6 0.2412 -4.5802 -1.5261 11 6 -0.0884 -5.1453 -2.8836 12 8 0.2503 -4.5523 -3.8858 13 7 -0.7605 -6.3092 -2.9840 14 6 -1.1433 -6.7865 -4.2348 15 6 -2.3488 -7.4738 -4.3761 16 6 -2.7327 -7.9399 -5.5989 17 6 -1.9031 -7.7353 -6.7188 18 6 -2.2907 -8.2199 -7.9866 19 1 -1.5441 -8.5844 -8.6767 20 6 -3.6420 -8.2281 -8.3491 21 7 -4.5542 -7.8684 -7.4824 22 14 -4.1439 -8.7524 -10.0704 23 1 -2.9328 -9.1093 -10.8521 24 1 -5.0434 -9.9311 -9.9862 25 1 -4.8547 -7.6343 -10.7409 26 6 -0.6846 -7.0449 -6.5671 27 6 -0.3164 -6.5803 -5.3389 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3634 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5181 31 1 1.6582 2.1327 -0.0004 32 1 4.1203 2.1328 0.0089 33 1 5.3517 0.0002 0.0003 34 1 4.1206 -2.1322 -0.0090 35 1 2.0339 -3.2639 0.4989 36 1 0.4924 -2.3740 0.5035 37 1 0.8609 -5.2899 -0.9781 38 1 -0.6809 -4.4006 -0.9733 39 1 -0.9776 -6.8144 -2.1849 40 1 -2.9818 -7.6334 -3.5157 41 1 -3.6683 -8.4683 -5.7074 42 1 -5.4910 -7.8745 -7.7338 43 1 -0.0432 -6.8847 -7.4212 44 1 0.6177 -6.0512 -5.2211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005320320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = 5.721131 kcal Electronic energy + Delta-G solvation = -24765.872894 eV Core-core repulsion = 21159.668756 eV Total energy + Delta-G solvation = -3606.204138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77055 -39.63276 -37.26310 -34.47605 -33.65730 -32.98516 -32.40177 -30.46187 -29.56261 -28.48091 -27.87509 -26.64552 -24.80861 -22.39628 -21.76811 -21.14303 -20.80971 -19.71845 -17.43282 -17.21867 -16.57980 -16.47867 -16.04861 -15.92219 -15.35993 -15.25723 -15.16625 -14.34634 -13.97028 -13.77510 -13.60042 -13.43906 -13.34574 -13.10151 -12.97007 -12.64465 -12.50740 -12.37508 -12.14838 -12.11405 -11.70725 -11.38542 -11.25940 -11.21264 -11.16342 -10.96900 -10.74533 -10.13581 -10.04501 -9.51544 -9.47582 -9.18591 -9.03163 -8.91358 -8.78945 -7.70484 -7.56354 -6.88769 -6.63090 -4.35527 0.73755 1.13727 1.67019 2.44389 2.49829 2.97446 3.07636 3.09843 3.15279 3.28810 3.55039 3.66732 3.97710 4.34901 4.45490 4.67788 4.68284 4.74024 4.87680 4.91802 4.93433 5.06914 5.14271 5.18074 5.28721 5.39103 5.45912 5.59284 5.64111 5.77099 5.94700 6.16796 6.19793 6.24782 6.36025 6.43158 6.71637 6.73477 6.88589 7.05332 7.18239 7.27905 7.62469 7.70453 7.83641 8.04954 8.21191 8.29986 8.59522 8.68556 8.91750 8.98093 10.28050 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.001769 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.685990 B =15828.625639 C =15942.917839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.097 4.097 7 C -0.071 4.071 8 C -0.074 4.074 9 S -0.161 6.161 10 C -0.132 4.132 11 C 0.514 3.486 12 O -0.509 6.509 13 N -0.647 5.647 14 C 0.002 3.998 15 C -0.120 4.120 16 C -0.141 4.141 17 C 0.100 3.900 18 C -0.460 4.460 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.811 5.811 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.205 4.205 27 C -0.085 4.085 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.396 0.604 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.277 0.723 43 H 0.097 0.903 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 11.527 19.038 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.145 4.145 6 C -0.117 4.117 7 C -0.073 4.073 8 C -0.221 4.221 9 S 0.068 5.932 10 C -0.283 4.283 11 C 0.298 3.702 12 O -0.384 6.384 13 N -0.290 5.290 14 C -0.090 4.090 15 C -0.140 4.140 16 C -0.161 4.161 17 C 0.097 3.903 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.439 5.439 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.225 4.225 27 C -0.104 4.104 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.229 0.771 40 H 0.109 0.891 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.777 12.445 17.381 23.507 hybrid contribution -0.847 -1.018 0.892 1.597 sum 8.930 11.427 18.272 23.328 Atomic orbital electron populations 1.20934 0.91011 1.03932 1.02250 1.19791 0.96276 0.92386 0.98289 1.21030 0.94297 0.97401 1.01310 1.21169 0.94324 0.98115 0.99594 1.21108 0.99934 0.92378 1.01097 1.21043 0.93247 0.98515 0.98925 1.19026 0.93448 0.92576 1.02210 1.22481 1.03229 0.97804 0.98583 1.87937 1.73543 1.24791 1.06943 1.23561 1.04408 0.99832 1.00522 1.19566 0.79887 0.81266 0.89462 1.90744 1.51341 1.59141 1.37203 1.42866 1.56213 1.21258 1.08713 1.17244 0.97233 1.10268 0.84278 1.20307 0.93796 1.02116 0.97763 1.21191 1.01748 1.02959 0.90244 1.17745 0.90615 0.88802 0.93110 1.19546 0.92423 1.36998 1.00078 0.90512 1.25893 0.96408 0.92965 0.99344 1.69769 1.02065 1.37071 1.34960 0.86140 0.79233 0.78714 0.81859 1.18560 1.19997 1.19968 1.20815 1.00631 1.05223 0.95800 1.20407 0.98126 0.99521 0.92391 0.91194 0.91211 0.90381 0.85931 0.86051 0.85943 0.85773 0.89334 0.89082 0.87590 0.87504 0.77052 0.89073 0.84993 0.91184 0.88523 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.19 36.00 0.33 -0.70 16 2 C -0.07 -0.63 5.88 -104.63 -0.62 -1.25 16 3 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 4 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 5 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 6 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 7 C -0.07 -0.71 5.14 -104.62 -0.54 -1.25 16 8 C -0.07 -0.67 5.33 36.01 0.19 -0.48 16 9 S -0.16 -2.12 20.50 -107.50 -2.20 -4.32 16 10 C -0.13 -1.55 6.43 36.00 0.23 -1.32 16 11 C 0.51 8.83 7.68 -10.99 -0.08 8.75 16 12 O -0.51 -11.15 13.29 5.56 0.07 -11.07 16 13 N -0.65 -11.04 5.30 -9.74 -0.05 -11.10 16 14 C 0.00 0.04 6.30 -83.57 -0.53 -0.48 16 15 C -0.12 -2.70 9.90 -39.79 -0.39 -3.10 16 16 C -0.14 -3.63 8.61 -39.26 -0.34 -3.96 16 17 C 0.10 2.69 5.55 -106.81 -0.59 2.09 16 18 C -0.46 -12.31 9.02 -37.85 -0.34 -12.65 16 19 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 20 C 0.07 1.75 5.42 -17.33 -0.09 1.65 16 21 N -0.81 -21.13 10.60 55.55 0.59 -20.54 16 22 Si 0.92 19.07 29.56 -169.99 -5.03 14.05 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 26 C -0.20 -5.23 9.74 -39.26 -0.38 -5.61 16 27 C -0.08 -2.04 8.61 -39.79 -0.34 -2.38 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.08 0.72 6.37 -51.93 -0.33 0.39 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.09 0.71 6.70 -51.92 -0.35 0.37 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.40 5.08 8.82 -40.82 -0.36 4.72 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.11 2.58 6.22 -52.49 -0.33 2.26 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -31.94 382.21 -11.80 -43.73 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.88 Total: 9.74 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -5.06 Total: -26.24 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.54 Total: -31.64 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.20 Total: -4.32 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.94 -11.80 -43.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005320320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.454 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds