Wall clock time and date at job start Tue Mar 31 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35992 * 117.00449 * 2 1 4 4 C 1.38562 * 120.07133 * 359.71842 * 3 2 1 5 5 C 1.38249 * 119.99987 * 179.79666 * 4 3 2 6 6 C 1.38249 * 120.14662 * 0.46311 * 5 4 3 7 7 C 1.50693 * 119.92904 * 179.76748 * 6 5 4 8 8 C 1.50693 * 109.47418 * 270.02406 * 7 6 5 9 9 O 1.21281 * 120.00216 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00427 * 179.97438 * 8 7 6 11 11 C 1.39235 * 120.00508 * 176.70034 * 10 8 7 12 12 C 1.39479 * 119.83682 * 217.49080 * 11 10 8 13 13 C 1.36373 * 120.16850 * 179.71636 * 12 11 10 14 14 C 1.40862 * 119.82810 * 0.57761 * 13 12 11 15 15 C 1.41162 * 120.16293 * 179.67864 * 14 13 12 16 16 H 1.07998 * 119.99609 * 157.96200 * 15 14 13 17 17 C 1.39900 * 120.00011 * 337.95987 * 15 14 13 18 18 N 1.30868 * 119.99941 * 327.60943 * 17 15 14 19 19 Si 1.86795 * 120.00003 * 147.60227 * 17 15 14 20 20 H 1.48502 * 109.47223 * 94.98783 * 19 17 15 21 21 H 1.48503 * 109.47444 * 214.99101 * 19 17 15 22 22 H 1.48510 * 109.47119 * 334.99087 * 19 17 15 23 23 C 1.40868 * 119.67443 * 359.69496 * 14 13 12 24 24 C 1.36371 * 119.82838 * 0.02562 * 23 14 13 25 25 C 1.38246 * 120.14367 * 359.79112 * 6 5 4 26 26 C 1.38562 * 120.00198 * 359.97438 * 25 6 5 27 27 O 1.35994 * 120.07495 * 180.02562 * 26 25 6 28 28 C 1.42903 * 116.99870 * 359.97231 * 27 26 25 29 29 H 1.08996 * 109.47511 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46854 * 300.00706 * 1 2 3 31 31 H 1.09005 * 109.47133 * 59.99963 * 1 2 3 32 32 H 1.08006 * 120.00384 * 0.02899 * 4 3 2 33 33 H 1.08007 * 119.92430 * 180.21156 * 5 4 3 34 34 H 1.09007 * 109.46852 * 30.02642 * 7 6 5 35 35 H 1.09004 * 109.47622 * 150.02279 * 7 6 5 36 36 H 0.97002 * 119.99822 * 356.69604 * 10 8 7 37 37 H 1.08001 * 119.91447 * 359.97438 * 12 11 10 38 38 H 1.08004 * 120.08120 * 180.25256 * 13 12 11 39 39 H 0.97004 * 120.00019 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.08954 * 179.97438 * 23 14 13 41 41 H 1.07998 * 119.91755 * 179.97438 * 24 23 14 42 42 H 1.07999 * 119.99893 * 179.97438 * 25 6 5 43 43 H 1.08998 * 109.47078 * 300.00316 * 28 27 26 44 44 H 1.08998 * 109.47175 * 60.00259 * 28 27 26 45 45 H 1.08997 * 109.46865 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3747 -0.0059 5 6 1.9226 3.6057 -0.0016 6 6 3.3031 3.6798 -0.0012 7 6 3.9839 5.0242 -0.0018 8 6 4.2108 5.4717 -1.4228 9 8 3.8544 4.7684 -2.3443 10 7 4.8090 6.6539 -1.6696 11 6 5.0808 7.0364 -2.9805 12 6 6.2595 7.7223 -3.2731 13 6 6.5353 8.0951 -4.5556 14 6 5.6204 7.7965 -5.5841 15 6 5.8955 8.1850 -6.9130 16 1 5.4138 7.6764 -7.7350 17 6 6.7921 9.2289 -7.1652 18 7 6.8925 10.2236 -6.3208 19 14 7.8461 9.2028 -8.7072 20 1 7.1797 9.9900 -9.7757 21 1 9.1740 9.7972 -8.4094 22 1 8.0225 7.8003 -9.1626 23 6 4.4293 7.1085 -5.2800 24 6 4.1700 6.7372 -3.9937 25 6 4.0604 2.5232 -0.0006 26 6 3.4360 1.2862 0.0001 27 8 4.1795 0.1475 0.0011 28 6 5.6003 0.3005 0.0010 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2147 2.3197 -0.0100 33 1 1.3343 4.5115 -0.0028 34 1 3.3540 5.7506 0.5117 35 1 4.9420 4.9466 0.5121 36 1 5.0501 7.2384 -0.9340 37 1 6.9576 7.9551 -2.4826 38 1 7.4504 8.6225 -4.7811 39 1 7.5145 10.9472 -6.4955 40 1 3.7229 6.8765 -6.0633 41 1 3.2571 6.2100 -3.7589 42 1 5.1387 2.5838 -0.0006 43 1 5.9065 0.8494 -0.8895 44 1 5.9066 0.8510 0.8904 45 1 6.0715 -0.6824 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005670907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:10 Heat of formation + Delta-G solvation = -61.695586 kcal Electronic energy + Delta-G solvation = -28166.442553 eV Core-core repulsion = 24114.562136 eV Total energy + Delta-G solvation = -4051.880417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.70849 -39.57419 -38.52279 -37.55861 -36.76017 -34.41859 -33.06016 -32.12721 -30.41099 -29.59716 -29.23823 -28.28602 -27.37155 -26.47218 -24.69581 -22.31232 -22.10377 -21.35988 -20.64158 -19.61664 -18.51720 -17.41308 -17.23719 -16.86538 -16.72933 -16.25086 -16.09819 -15.34952 -15.22432 -14.86679 -14.84844 -14.54636 -14.33718 -13.97132 -13.62193 -13.47749 -13.04889 -12.74766 -12.59346 -12.37901 -12.20005 -12.09761 -11.97771 -11.86135 -11.37128 -11.30578 -11.29047 -11.19266 -11.13758 -10.98080 -10.94183 -10.53694 -10.15676 -9.73352 -9.42373 -9.06218 -8.74411 -8.68087 -7.81829 -7.55204 -7.14998 -6.88889 -4.27645 1.22400 1.37030 2.59052 2.96751 3.04429 3.09665 3.12244 3.15007 3.18822 3.35814 3.53842 3.88581 3.98482 4.49226 4.58528 4.66014 4.84266 4.94711 4.98339 5.01571 5.08419 5.14377 5.25543 5.29527 5.31970 5.38450 5.41865 5.45989 5.65059 5.68085 6.04117 6.17412 6.18303 6.42771 6.51269 6.59417 6.77678 6.94154 6.96177 6.99834 7.14714 7.29096 7.48847 7.56495 7.70223 7.90051 8.01941 8.25391 8.30467 8.54825 8.79772 8.83663 9.00775 10.01379 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.002081 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.048345 B =13453.703133 C =13545.255479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.094 3.906 4 C -0.170 4.170 5 C -0.101 4.101 6 C -0.055 4.055 7 C -0.099 4.099 8 C 0.497 3.503 9 O -0.524 6.524 10 N -0.652 5.652 11 C -0.021 4.021 12 C -0.103 4.103 13 C -0.172 4.172 14 C 0.112 3.888 15 C -0.465 4.465 16 H 0.082 0.918 17 C 0.088 3.912 18 N -0.770 5.770 19 Si 0.896 3.104 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.065 4.065 25 C -0.155 4.155 26 C 0.100 3.900 27 O -0.309 6.309 28 C 0.026 3.974 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.394 0.606 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.283 0.717 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 -11.806 16.122 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.049 3.951 4 C -0.189 4.189 5 C -0.119 4.119 6 C -0.055 4.055 7 C -0.139 4.139 8 C 0.283 3.717 9 O -0.400 6.400 10 N -0.295 5.295 11 C -0.113 4.113 12 C -0.123 4.123 13 C -0.192 4.192 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.100 0.900 17 C -0.134 4.134 18 N -0.393 5.393 19 Si 0.719 3.281 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.085 4.085 25 C -0.174 4.174 26 C 0.054 3.946 27 O -0.223 6.223 28 C -0.069 4.069 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.227 0.773 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.748 -12.486 15.521 20.733 hybrid contribution 0.682 0.855 -0.348 1.148 sum -5.066 -11.631 15.173 19.778 Atomic orbital electron populations 1.23040 0.78814 1.03756 1.01216 1.86148 1.20824 1.26086 1.89241 1.18201 0.89094 0.85119 1.02682 1.20975 0.99769 0.91411 1.06741 1.20678 0.93686 0.97125 1.00451 1.18968 0.93228 0.93268 1.00087 1.20636 1.02405 0.95194 0.95705 1.20421 0.79305 0.81284 0.90685 1.90718 1.49444 1.54005 1.45799 1.42961 1.60082 1.18668 1.07788 1.17048 0.98325 1.12821 0.83076 1.20170 0.94442 1.01076 0.96597 1.20616 1.00442 1.06261 0.91833 1.17593 0.89578 0.88851 0.93008 1.19505 1.22116 1.14393 0.93303 0.90031 1.25937 0.95782 0.93627 0.98015 1.69947 1.28199 1.05015 1.36099 0.86516 0.79633 0.80072 0.81893 1.19452 1.19886 1.18094 1.20605 0.98679 1.10110 0.95032 1.20299 0.97160 0.98264 0.92779 1.20868 1.00182 0.90580 1.05773 1.18137 0.88191 0.85953 1.02287 1.86142 1.18636 1.28291 1.89193 1.23067 0.78704 1.03728 1.01445 0.88393 0.92854 0.92676 0.84848 0.85647 0.88148 0.88335 0.77319 0.89314 0.87510 0.90616 0.88796 0.88016 0.84906 0.92435 0.92813 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.00 10.28 -34.22 -0.35 -4.35 16 3 C 0.09 1.29 6.70 -39.12 -0.26 1.03 16 4 C -0.17 -2.04 9.04 -39.46 -0.36 -2.39 16 5 C -0.10 -1.25 9.69 -39.57 -0.38 -1.63 16 6 C -0.05 -0.71 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -1.14 5.83 -29.04 -0.17 -1.31 16 8 C 0.50 8.37 7.63 -10.99 -0.08 8.28 16 9 O -0.52 -11.24 13.65 5.56 0.08 -11.17 16 10 N -0.65 -11.18 5.30 -9.74 -0.05 -11.23 16 11 C -0.02 -0.46 6.25 -83.57 -0.52 -0.98 16 12 C -0.10 -2.34 9.90 -39.79 -0.39 -2.73 16 13 C -0.17 -4.39 8.74 -39.26 -0.34 -4.73 16 14 C 0.11 3.02 5.57 -106.80 -0.60 2.43 16 15 C -0.47 -12.35 8.94 -37.85 -0.34 -12.69 16 16 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 17 C 0.09 2.18 4.77 -17.34 -0.08 2.09 16 18 N -0.77 -19.39 11.78 55.55 0.65 -18.74 16 19 Si 0.90 18.22 29.66 -169.99 -5.04 13.18 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.22 -5.78 9.74 -39.26 -0.38 -6.16 16 24 C -0.07 -1.58 8.59 -39.79 -0.34 -1.92 16 25 C -0.16 -2.05 8.69 -39.46 -0.34 -2.40 16 26 C 0.10 1.41 6.70 -39.12 -0.26 1.15 16 27 O -0.31 -4.22 10.28 -34.22 -0.35 -4.57 16 28 C 0.03 0.24 9.81 101.05 0.99 1.24 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.35 7.68 -51.93 -0.40 -0.05 16 31 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 32 H 0.13 1.22 6.30 -52.48 -0.33 0.89 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.39 5.20 8.82 -40.82 -0.36 4.84 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.11 2.76 6.52 -52.48 -0.34 2.42 16 39 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 40 H 0.09 2.31 8.06 -52.48 -0.42 1.89 16 41 H 0.10 2.45 6.45 -52.49 -0.34 2.11 16 42 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 43 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 44 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -33.38 381.03 -8.46 -41.84 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.80 Total: 9.99 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.33 Total: -20.69 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.60 Total: -29.97 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.63 Total: -20.09 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.04 Total: 13.18 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.38 -8.46 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005670907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.859 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds