Wall clock time and date at job start Tue Mar 31 2020 04:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34482 * 125.36161 * 2 1 4 4 C 1.46713 * 106.51101 * 179.97438 * 3 2 1 5 5 C 1.46334 * 127.05379 * 180.02562 * 4 3 2 6 6 N 1.31017 * 119.99640 * 179.97438 * 5 4 3 7 7 N 1.40105 * 119.99935 * 179.97438 * 6 5 4 8 8 C 1.34771 * 120.00164 * 179.97438 * 7 6 5 9 9 O 1.22068 * 119.99971 * 0.02562 * 8 7 6 10 10 C 1.40092 * 119.99929 * 180.02562 * 8 7 6 11 11 H 1.07997 * 119.99715 * 353.69195 * 10 8 7 12 12 C 1.40121 * 120.00107 * 173.69407 * 10 8 7 13 13 N 1.30657 * 119.99550 * 6.29741 * 12 10 8 14 14 Si 1.86792 * 120.00056 * 186.29692 * 12 10 8 15 15 H 1.48505 * 109.47341 * 94.98434 * 14 12 10 16 16 H 1.48499 * 109.47169 * 214.98600 * 14 12 10 17 17 H 1.48500 * 109.47274 * 334.98433 * 14 12 10 18 18 C 1.39195 * 105.89173 * 359.75074 * 4 3 2 19 19 C 1.50697 * 126.00829 * 180.28246 * 18 4 3 20 20 N 1.34830 * 107.99123 * 0.40500 * 18 4 3 21 21 C 1.40060 * 124.83834 * 179.83752 * 20 18 4 22 22 C 1.38903 * 120.06825 * 64.70192 * 21 20 18 23 23 C 1.38081 * 119.93010 * 180.02562 * 22 21 20 24 24 C 1.38311 * 120.07118 * 359.74817 * 23 22 21 25 25 C 1.50699 * 119.93295 * 180.25635 * 24 23 22 26 26 C 1.38271 * 120.13903 * 0.50739 * 24 23 22 27 27 C 1.50698 * 119.96803 * 179.77017 * 26 24 23 28 28 C 1.38135 * 120.06953 * 359.49007 * 26 24 23 29 29 H 1.08995 * 109.47157 * 269.99521 * 1 2 3 30 30 H 1.08994 * 109.47201 * 30.00403 * 1 2 3 31 31 H 1.09009 * 109.46719 * 149.99961 * 1 2 3 32 32 H 1.07998 * 126.74007 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.00313 * 359.97438 * 5 4 3 34 34 H 0.96999 * 119.99743 * 0.02562 * 7 6 5 35 35 H 0.97005 * 119.99458 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.47366 * 270.14899 * 19 18 4 37 37 H 1.09003 * 109.47241 * 30.15023 * 19 18 4 38 38 H 1.09000 * 109.47425 * 150.15022 * 19 18 4 39 39 H 1.07998 * 120.03252 * 0.02562 * 22 21 20 40 40 H 1.07996 * 119.96516 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.46999 * 270.25126 * 25 24 23 42 42 H 1.09002 * 109.47161 * 30.25400 * 25 24 23 43 43 H 1.09003 * 109.47243 * 150.25310 * 25 24 23 44 44 H 1.09005 * 109.46963 * 269.72786 * 27 26 24 45 45 H 1.08998 * 109.47394 * 149.72552 * 27 26 24 46 46 H 1.08998 * 109.47395 * 29.71952 * 27 26 24 47 47 H 1.07994 * 120.03241 * 180.27419 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6737 0.6227 0.0006 5 6 4.8855 1.4430 0.0014 6 7 6.0640 0.8706 0.0024 7 7 7.2243 1.6559 0.0026 8 6 8.4366 1.0671 0.0041 9 8 8.5237 -0.1505 0.0049 10 6 9.5967 1.8524 0.0049 11 1 9.5228 2.9249 -0.0986 12 6 10.8529 1.2464 0.1398 13 7 10.9529 -0.0563 0.1411 14 14 12.3843 2.3010 0.3176 15 1 12.7047 2.4698 1.7578 16 1 13.5232 1.6397 -0.3687 17 1 12.1427 3.6320 -0.2950 18 6 3.6019 -0.7674 0.0068 19 6 4.7736 -1.7150 0.0157 20 7 2.2998 -1.1171 0.0006 21 6 1.8252 -2.4349 0.0007 22 6 2.0670 -3.2615 1.0905 23 6 1.5983 -4.5603 1.0874 24 6 0.8842 -5.0369 0.0029 25 6 0.3692 -6.4531 0.0053 26 6 0.6464 -4.2182 -1.0857 27 6 -0.1275 -4.7430 -2.2674 28 6 1.1126 -2.9178 -1.0887 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 1.9534 2.1244 0.0004 33 1 4.8085 2.5202 0.0011 34 1 7.1550 2.6234 0.0023 35 1 11.8225 -0.4758 0.2349 36 1 5.0618 -1.9462 -1.0097 37 1 5.6129 -1.2502 0.5330 38 1 4.4936 -2.6342 0.5304 39 1 2.6210 -2.8888 1.9393 40 1 1.7856 -5.2034 1.9346 41 1 1.1212 -7.1139 -0.4257 42 1 0.1585 -6.7614 1.0294 43 1 -0.5448 -6.5083 -0.5860 44 1 0.5624 -5.1849 -2.9864 45 1 -0.6692 -3.9236 -2.7400 46 1 -0.8356 -5.5002 -1.9308 47 1 0.9227 -2.2775 -1.9374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005740475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:27 Heat of formation + Delta-G solvation = 66.580063 kcal Electronic energy + Delta-G solvation = -28041.165986 eV Core-core repulsion = 24190.285342 eV Total energy + Delta-G solvation = -3850.880643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47614 -39.41326 -37.41947 -35.19825 -34.16773 -32.84319 -32.51205 -32.27674 -31.14917 -29.58032 -28.87326 -27.67667 -26.72683 -25.99099 -24.20346 -22.64857 -22.38154 -21.05257 -19.83461 -19.68968 -18.38830 -17.06800 -16.71253 -16.35409 -15.77796 -15.52015 -15.42640 -14.75747 -14.47643 -14.35155 -14.05824 -13.64672 -13.46971 -13.16151 -13.14777 -13.13119 -13.03573 -12.82179 -12.76583 -12.57173 -12.29280 -12.13882 -12.05321 -11.84354 -11.66242 -11.57583 -11.36177 -11.33485 -11.15146 -11.08766 -10.76197 -10.53895 -10.30195 -9.19702 -9.11009 -9.02069 -8.89198 -8.38207 -7.85931 -7.63425 -6.79248 -6.32703 -4.85956 0.85491 1.05105 2.09922 2.53136 2.93466 3.08419 3.15226 3.19295 3.34079 3.82046 3.90787 4.23327 4.44953 4.51398 4.53598 4.63807 4.72559 4.86625 4.94733 5.11024 5.16697 5.20383 5.30948 5.35630 5.39659 5.41667 5.46589 5.49281 5.50960 5.67927 5.72283 5.78166 5.84697 5.88089 5.91370 6.05508 6.10113 6.13025 6.23384 6.25573 6.30270 6.58770 6.59430 6.80224 6.96189 7.23051 7.28406 7.44539 7.68362 7.98896 8.11411 8.84206 8.93596 9.46755 10.46889 10.78516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.002265 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.318324 B =12357.246599 C =13549.472866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 C -0.164 4.164 4 C -0.123 4.123 5 C 0.069 3.931 6 N -0.210 5.210 7 N -0.597 5.597 8 C 0.562 3.438 9 O -0.559 6.559 10 C -0.539 4.539 11 H 0.069 0.931 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.074 3.926 19 C -0.087 4.087 20 N -0.401 5.401 21 C 0.123 3.877 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.084 4.084 25 C -0.118 4.118 26 C -0.077 4.077 27 C -0.117 4.117 28 C -0.108 4.108 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.102 0.898 34 H 0.365 0.635 35 H 0.272 0.728 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.052 0.948 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.405 -7.206 -0.693 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.190 4.190 4 C -0.131 4.131 5 C -0.141 4.141 6 N -0.020 5.020 7 N -0.342 5.342 8 C 0.371 3.629 9 O -0.439 6.439 10 C -0.576 4.576 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.372 5.372 14 Si 0.739 3.261 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.041 4.041 19 C -0.144 4.144 20 N -0.077 5.077 21 C 0.034 3.966 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.085 4.085 25 C -0.174 4.174 26 C -0.078 4.078 27 C -0.173 4.173 28 C -0.127 4.127 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.120 0.880 34 H 0.200 0.800 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.631 -9.318 -0.695 25.411 hybrid contribution 0.517 2.125 0.133 2.191 sum -23.114 -7.193 -0.562 24.213 Atomic orbital electron populations 1.20291 0.88513 1.02764 1.02276 1.20150 0.93055 0.84946 1.12057 1.21620 0.90859 0.97017 1.09464 1.18964 0.90961 0.89977 1.13222 1.23169 0.89668 0.95965 1.05259 1.74968 0.93778 1.25703 1.07511 1.47929 1.02884 1.06366 1.77017 1.16538 0.79599 0.88639 0.78172 1.90725 1.84889 1.14127 1.54148 1.19621 0.90265 0.94836 1.52850 0.91248 1.25744 1.00236 0.94902 0.92555 1.70060 1.25240 1.09952 1.31992 0.86241 0.80348 0.80518 0.79018 1.19556 1.20206 1.18664 1.21213 0.83359 0.94508 1.05001 1.20534 0.94637 0.96039 1.03231 1.40867 1.05461 1.02967 1.58360 1.17651 0.99841 0.84088 0.95048 1.21245 1.00281 0.94108 0.97400 1.20920 0.97871 0.94959 0.98493 1.19855 0.98358 0.96427 0.93816 1.20877 1.01296 0.92362 1.02875 1.19612 0.99119 0.92987 0.96077 1.20870 0.99422 1.01603 0.95439 1.21037 0.99082 0.95527 0.97073 0.91544 0.90382 0.92073 0.83942 0.88040 0.79957 0.91668 0.91119 0.87041 0.92903 0.85196 0.85211 0.90852 0.91438 0.91031 0.90807 0.91460 0.90893 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.03 36.01 0.36 -0.42 16 2 C 0.00 0.05 6.76 -81.62 -0.55 -0.50 16 3 C -0.16 -2.36 10.99 -37.49 -0.41 -2.78 16 4 C -0.12 -2.18 6.34 -102.87 -0.65 -2.83 16 5 C 0.07 1.32 11.05 -14.65 -0.16 1.16 16 6 N -0.21 -4.95 8.65 32.08 0.28 -4.68 16 7 N -0.60 -14.91 6.26 28.81 0.18 -14.73 16 8 C 0.56 16.76 7.63 -15.57 -0.12 16.65 16 9 O -0.56 -18.86 15.21 4.86 0.07 -18.79 16 10 C -0.54 -15.30 9.22 -38.18 -0.35 -15.66 16 11 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 12 C 0.09 2.46 5.49 -17.34 -0.10 2.37 16 13 N -0.75 -22.17 11.72 55.55 0.65 -21.52 16 14 Si 0.91 19.80 29.56 -169.99 -5.03 14.78 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 18 C 0.07 1.29 6.88 -80.92 -0.56 0.73 16 19 C -0.09 -1.61 9.47 36.00 0.34 -1.27 16 20 N -0.40 -5.93 2.74 -51.89 -0.14 -6.07 16 21 C 0.12 1.59 4.88 -83.62 -0.41 1.18 16 22 C -0.11 -1.32 8.60 -39.39 -0.34 -1.66 16 23 C -0.10 -1.01 9.69 -39.61 -0.38 -1.39 16 24 C -0.08 -0.75 5.88 -104.58 -0.62 -1.37 16 25 C -0.12 -0.71 9.60 36.01 0.35 -0.37 16 26 C -0.08 -0.72 5.88 -104.65 -0.62 -1.33 16 27 C -0.12 -0.76 9.61 36.00 0.35 -0.42 16 28 C -0.11 -1.20 8.28 -39.39 -0.33 -1.52 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 6.67 -51.92 -0.35 0.21 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.10 1.68 8.04 -52.49 -0.42 1.26 16 34 H 0.37 7.81 8.62 -182.59 -1.57 6.24 16 35 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.11 2.46 6.35 -51.93 -0.33 2.13 16 38 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 39 H 0.13 1.57 8.04 -52.49 -0.42 1.14 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 43 H 0.07 0.35 5.93 -51.93 -0.31 0.04 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 46 H 0.07 0.37 5.93 -51.93 -0.31 0.06 16 47 H 0.13 1.35 8.05 -52.49 -0.42 0.93 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -36.42 395.18 -10.05 -46.47 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.82 Total: 8.02 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -4.19 Total: -9.43 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.97 Total: -47.00 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.07 Total: -18.79 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.42 -10.05 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005740475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.046 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds