Wall clock time and date at job start Tue Mar 31 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35945 * 117.00143 * 2 1 4 4 C 1.38178 * 120.00692 * 0.02562 * 3 2 1 5 5 C 1.39777 * 119.85693 * 179.97438 * 4 3 2 6 6 C 1.47332 * 120.07183 * 179.97438 * 5 4 3 7 7 N 1.29869 * 120.00094 * 179.97438 * 6 5 4 8 8 N 1.40100 * 119.99805 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99971 * 180.02562 * 8 7 6 10 10 O 1.21562 * 120.00270 * 359.97438 * 9 8 7 11 11 C 1.48093 * 120.00131 * 179.97438 * 9 8 7 12 12 C 1.39347 * 119.72739 * 179.97438 * 11 9 8 13 13 C 1.38564 * 119.05796 * 179.97438 * 12 11 9 14 14 C 1.38652 * 118.48965 * 0.02562 * 13 12 11 15 15 C 1.38539 * 119.36126 * 0.27380 * 14 13 12 16 16 N 1.31532 * 120.90897 * 359.44427 * 15 14 13 17 17 C 1.39844 * 119.86313 * 0.27482 * 5 4 3 18 18 C 1.37762 * 120.01490 * 359.46591 * 17 5 4 19 19 C 1.38967 * 120.14537 * 0.50988 * 18 17 5 20 20 O 1.35691 * 119.93426 * 179.74028 * 19 18 17 21 21 C 1.34787 * 117.00061 * 354.38989 * 20 19 18 22 22 H 1.08001 * 119.99981 * 5.05856 * 21 20 19 23 23 C 1.38629 * 119.99760 * 185.06236 * 21 20 19 24 24 N 1.31566 * 120.00303 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99616 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47167 * 59.99904 * 25 23 21 27 27 H 1.48499 * 109.46975 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47353 * 299.99984 * 25 23 21 29 29 H 1.09000 * 109.47242 * 59.99365 * 1 2 3 30 30 H 1.08999 * 109.47619 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47466 * 299.99679 * 1 2 3 32 32 H 1.08000 * 120.07631 * 359.94865 * 4 3 2 33 33 H 1.07997 * 119.99566 * 0.02562 * 6 5 4 34 34 H 0.97005 * 119.99913 * 359.97438 * 8 7 6 35 35 H 1.08003 * 120.47403 * 0.02667 * 12 11 9 36 36 H 1.07996 * 120.75643 * 180.02562 * 13 12 11 37 37 H 1.08001 * 120.31711 * 179.97438 * 14 13 12 38 38 H 1.08005 * 119.54749 * 179.69781 * 15 14 13 39 39 H 1.08001 * 119.99290 * 179.70344 * 17 5 4 40 40 H 1.07997 * 119.92813 * 180.25988 * 18 17 5 41 41 H 0.96996 * 120.00137 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3702 0.0005 5 6 1.9316 3.6140 0.0011 6 6 1.1340 4.8527 0.0011 7 7 1.7281 6.0076 0.0021 8 7 0.9696 7.1855 0.0026 9 6 1.5861 8.3840 0.0031 10 8 2.8003 8.4430 0.0036 11 6 0.7843 9.6291 0.0031 12 6 1.4276 10.8652 0.0042 13 6 0.6639 12.0213 0.0037 14 6 -0.7174 11.9015 0.0026 15 6 -1.2898 10.6399 0.0079 16 7 -0.5413 9.5584 0.0029 17 6 3.3285 3.6801 -0.0047 18 6 4.0733 2.5212 0.0001 19 6 3.4397 1.2844 0.0001 20 8 4.1775 0.1456 -0.0004 21 6 5.5133 0.2820 -0.1183 22 1 5.9571 1.2666 -0.1246 23 6 6.3174 -0.8416 -0.2316 24 7 5.7767 -2.0410 -0.2235 25 14 8.1685 -0.6525 -0.3957 26 1 8.7019 0.0516 0.7980 27 1 8.7958 -1.9945 -0.4996 28 1 8.4794 0.1356 -1.6153 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2151 2.3153 0.0001 33 1 0.0553 4.8003 0.0011 34 1 0.0007 7.1384 0.0019 35 1 2.5062 10.9213 0.0046 36 1 1.1339 12.9937 0.0041 37 1 -1.3411 12.7832 0.0026 38 1 -2.3655 10.5431 0.0120 39 1 3.8235 4.6400 -0.0092 40 1 5.1520 2.5740 -0.0001 41 1 6.3393 -2.8271 -0.3031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006145596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:20 Heat of formation + Delta-G solvation = 18.281454 kcal Electronic energy + Delta-G solvation = -26940.840755 eV Core-core repulsion = 22788.888060 eV Total energy + Delta-G solvation = -4151.952696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88881 -39.65561 -39.00930 -37.60893 -36.95494 -35.55879 -33.31629 -32.52598 -32.12303 -31.45616 -29.63969 -28.83957 -26.68342 -25.60584 -24.98697 -23.95540 -22.95341 -21.70619 -20.99327 -20.28766 -18.59607 -18.14604 -17.40876 -17.28901 -16.89876 -16.20454 -15.82353 -15.46167 -15.28652 -15.20090 -15.17877 -14.61477 -14.35880 -13.99731 -13.99364 -13.87742 -13.67508 -13.52633 -13.39245 -12.52334 -12.45204 -12.37033 -11.74523 -11.53953 -11.45430 -11.12002 -10.96788 -10.78231 -10.58143 -10.51020 -10.48777 -10.46777 -10.04040 -9.92839 -9.68083 -9.48611 -9.11445 -8.69873 -7.92377 -6.89194 -6.53945 -4.06287 0.18742 0.72745 1.34067 2.19355 2.44341 2.46780 2.98602 3.12087 3.15578 3.16953 3.53934 3.66262 3.90627 3.97441 4.30749 4.33071 4.49767 4.52479 4.57855 4.86936 4.91154 4.98504 5.08556 5.16673 5.24907 5.45857 5.48204 5.54091 5.61170 5.61630 5.83131 5.85751 5.97219 6.07634 6.18573 6.30274 6.52366 6.85385 7.01213 7.02630 7.18204 7.21020 7.32681 7.53791 7.60775 7.86733 8.11645 8.45168 8.89632 9.57682 10.61926 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.001999 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.476310 B =14001.886382 C =15691.230382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.144 4.144 6 C 0.153 3.847 7 N -0.267 5.267 8 N -0.567 5.567 9 C 0.586 3.414 10 O -0.500 6.500 11 C 0.085 3.915 12 C -0.108 4.108 13 C -0.080 4.080 14 C -0.151 4.151 15 C 0.098 3.902 16 N -0.463 5.463 17 C -0.039 4.039 18 C -0.226 4.226 19 C 0.151 3.849 20 O -0.150 6.150 21 C -0.390 4.390 22 H 0.097 0.903 23 C 0.041 3.959 24 N -0.848 5.848 25 Si 0.944 3.056 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.390 0.610 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.325 22.135 0.271 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.155 4.155 5 C -0.148 4.148 6 C -0.054 4.054 7 N -0.073 5.073 8 N -0.308 5.308 9 C 0.371 3.629 10 O -0.371 6.371 11 C -0.054 4.054 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.171 4.171 15 C -0.061 4.061 16 N -0.175 5.175 17 C -0.060 4.060 18 C -0.246 4.246 19 C 0.094 3.906 20 O -0.050 6.050 21 C -0.465 4.465 22 H 0.115 0.885 23 C -0.165 4.165 24 N -0.480 5.480 25 Si 0.768 3.232 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.192 1.192 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.229 0.771 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.181 0.819 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.899 21.220 0.273 25.368 hybrid contribution -0.527 0.906 -0.079 1.051 sum -14.426 22.126 0.194 26.414 Atomic orbital electron populations 1.22902 0.80344 1.03014 1.00287 1.86245 1.19429 1.26158 1.89794 1.17942 0.89316 0.84430 1.07711 1.20656 0.98407 0.90584 1.05825 1.17451 0.92492 0.88832 1.16031 1.24401 0.97071 0.90738 0.93171 1.75149 1.22251 0.92047 1.17816 1.46627 1.08555 1.03478 1.72118 1.17517 0.86928 0.81255 0.77234 1.90822 1.12799 1.86270 1.47255 1.21070 0.90086 0.93495 1.00774 1.22165 1.02702 0.91504 0.96529 1.21674 0.93872 0.99085 0.95965 1.22416 0.95901 0.99537 0.99252 1.22819 1.00325 0.87509 0.95476 1.67580 1.05454 1.34025 1.10429 1.20976 0.92345 0.97885 0.94799 1.20884 1.00854 0.90637 1.12193 1.18875 0.88283 0.87694 0.95762 1.84011 1.19686 1.25769 1.75558 1.21459 0.78417 0.95081 1.51582 0.88543 1.25378 1.00811 0.94170 0.96157 1.70059 1.36630 0.97756 1.43594 0.85728 0.79921 0.78088 0.79471 1.19251 1.20177 1.19238 0.93509 0.89060 0.93518 0.85902 0.87499 0.77106 0.83064 0.83794 0.84050 0.81873 0.85786 0.84455 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.33 10.28 -34.18 -0.35 -6.68 16 3 C 0.05 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.13 -2.31 8.77 -39.03 -0.34 -2.65 16 5 C -0.14 -2.53 5.87 -105.02 -0.62 -3.15 16 6 C 0.15 2.29 10.74 -14.68 -0.16 2.13 16 7 N -0.27 -4.46 10.15 32.14 0.33 -4.13 16 8 N -0.57 -8.10 6.25 30.59 0.19 -7.91 16 9 C 0.59 8.70 7.93 -12.22 -0.10 8.60 16 10 O -0.50 -9.11 16.66 5.31 0.09 -9.02 16 11 C 0.09 0.97 6.75 -83.01 -0.56 0.41 16 12 C -0.11 -0.98 9.63 -39.05 -0.38 -1.35 16 13 C -0.08 -0.47 10.17 -39.31 -0.40 -0.87 16 14 C -0.15 -0.75 10.11 -39.32 -0.40 -1.15 16 15 C 0.10 0.64 11.18 -17.57 -0.20 0.44 16 16 N -0.46 -4.51 9.54 -9.81 -0.09 -4.60 16 17 C -0.04 -0.77 9.57 -39.15 -0.37 -1.14 16 18 C -0.23 -4.93 9.14 -39.49 -0.36 -5.29 16 19 C 0.15 3.66 6.67 -38.82 -0.26 3.40 16 20 O -0.15 -4.26 9.53 -14.26 -0.14 -4.40 16 21 C -0.39 -10.71 9.48 30.88 0.29 -10.41 16 22 H 0.10 2.43 5.19 -52.49 -0.27 2.15 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 24 N -0.85 -24.46 13.67 55.48 0.76 -23.70 16 25 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 28 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 29 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 32 H 0.12 1.67 6.28 -52.49 -0.33 1.34 16 33 H 0.11 1.20 8.02 -52.49 -0.42 0.78 16 34 H 0.39 4.49 7.98 -182.59 -1.46 3.03 16 35 H 0.15 1.33 7.64 -52.48 -0.40 0.93 16 36 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 38 H 0.16 0.56 8.06 -52.48 -0.42 0.13 16 39 H 0.12 2.36 7.54 -52.49 -0.40 1.96 16 40 H 0.14 2.96 5.62 -52.49 -0.29 2.66 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -35.36 369.19 -7.08 -42.44 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.19 Total: 5.06 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.21 Total: -7.78 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 1.18 Total: -40.34 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.40 Total: -20.10 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.36 -7.08 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006145596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.726 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds