Wall clock time and date at job start Tue Mar 31 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.38102 * 119.99705 * 181.17202 * 3 2 1 5 5 C 1.41829 * 119.99912 * 352.99859 * 4 3 2 6 6 C 1.38687 * 126.89652 * 342.81087 * 5 4 3 7 7 N 1.34062 * 107.78285 * 179.73580 * 6 5 4 8 8 C 1.46501 * 125.09174 * 180.28416 * 7 6 5 9 9 C 1.50704 * 109.46655 * 125.00381 * 8 7 6 10 10 H 1.08001 * 120.00382 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99503 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00327 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99552 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47307 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47100 * 119.99673 * 13 11 9 16 16 H 1.48503 * 109.47109 * 239.99626 * 13 11 9 17 17 N 1.39733 * 109.80921 * 0.26537 * 7 6 5 18 18 C 1.31302 * 109.25581 * 0.02562 * 17 7 6 19 19 C 1.48211 * 126.52756 * 179.97438 * 18 17 7 20 20 C 1.39433 * 120.09887 * 144.69709 * 19 18 17 21 21 C 1.37959 * 119.89194 * 179.76599 * 20 19 18 22 22 C 1.38571 * 120.10099 * 0.53488 * 21 20 19 23 23 F 1.35103 * 119.89169 * 179.72026 * 22 21 20 24 24 C 1.38567 * 120.20979 * 359.69839 * 22 21 20 25 25 C 1.37950 * 120.10309 * 0.04434 * 24 22 21 26 26 C 1.46811 * 120.00083 * 1.16704 * 3 2 1 27 27 O 1.21598 * 119.99962 * 179.97438 * 26 3 2 28 28 O 1.34852 * 120.00244 * 0.02562 * 26 3 2 29 29 H 1.08001 * 120.00131 * 173.00496 * 4 3 2 30 30 H 1.07996 * 126.10832 * 0.02562 * 6 5 4 31 31 H 1.08996 * 109.47249 * 245.00044 * 8 7 6 32 32 H 1.08994 * 109.47444 * 5.00594 * 8 7 6 33 33 H 0.97003 * 120.00022 * 180.02562 * 12 11 9 34 34 H 1.07994 * 120.05544 * 0.02562 * 20 19 18 35 35 H 1.07993 * 119.94825 * 180.25335 * 21 20 19 36 36 H 1.07994 * 119.94870 * 180.02562 * 24 22 21 37 37 H 1.07999 * 120.05435 * 180.02562 * 25 24 22 38 38 H 0.96699 * 116.99799 * 179.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2580 1.1967 0.0245 5 6 2.5562 2.4229 -0.1002 6 6 1.2648 2.5986 -0.5745 7 7 0.9839 3.9084 -0.5216 8 6 -0.2863 4.5145 -0.9286 9 6 -0.8432 5.3271 0.2119 10 1 -0.3050 5.3859 1.1465 11 6 -2.0403 5.9947 0.0625 12 7 -2.6958 5.9228 -1.0753 13 14 -2.7302 7.0026 1.4759 14 1 -1.8084 6.9225 2.6373 15 1 -2.8707 8.4188 1.0516 16 1 -4.0604 6.4674 1.8625 17 7 2.0840 4.6087 -0.0198 18 6 3.0527 3.7624 0.2436 19 6 4.3900 4.0943 0.7896 20 6 5.0218 3.2191 1.6722 21 6 6.2687 3.5300 2.1741 22 6 6.8882 4.7152 1.8111 23 9 8.1068 5.0181 2.3096 24 6 6.2621 5.5903 0.9381 25 6 5.0176 5.2855 0.4269 26 6 3.3027 -1.2702 -0.0259 27 8 4.5187 -1.2696 -0.0264 28 8 2.6291 -2.4381 -0.0502 29 1 4.3320 1.1984 0.1384 30 1 0.6021 1.8190 -0.9199 31 1 -0.1205 5.1623 -1.7893 32 1 -0.9943 3.7299 -1.1953 33 1 -3.5378 6.3928 -1.1805 34 1 4.5377 2.2973 1.9592 35 1 6.7606 2.8509 2.8546 36 1 6.7489 6.5126 0.6576 37 1 4.5304 5.9679 -0.2538 38 1 3.1562 -3.2486 -0.0671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006509613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:07 Heat of formation + Delta-G solvation = 7.644158 kcal Electronic energy + Delta-G solvation = -27514.663476 eV Core-core repulsion = 23238.789208 eV Total energy + Delta-G solvation = -4275.874268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.04082 -41.09319 -40.07951 -38.90430 -36.91204 -36.16467 -34.56555 -33.55214 -32.53246 -31.35292 -30.24314 -29.62633 -27.46549 -24.98031 -23.99201 -23.23066 -22.37464 -22.01083 -20.51139 -19.99231 -18.65752 -17.78339 -17.51785 -16.84017 -16.52890 -16.32615 -15.73587 -15.68739 -15.65329 -15.27400 -14.74620 -14.50016 -14.28252 -13.99985 -13.81881 -13.68936 -13.41556 -13.34439 -13.17344 -12.69202 -12.54297 -12.40844 -12.28751 -11.98503 -11.75648 -11.63559 -11.21642 -11.18575 -11.03744 -10.76741 -10.64858 -10.44504 -10.19319 -10.04992 -9.42997 -9.29320 -8.81529 -8.51521 -7.81175 -6.44790 -4.52169 0.24110 0.81325 1.08395 2.22198 2.39256 2.69221 2.75406 2.82364 3.11970 3.18895 3.20234 3.26359 3.51560 3.71260 4.04365 4.07735 4.14168 4.26826 4.49888 4.66266 4.70718 4.92460 5.06358 5.08470 5.12715 5.16821 5.30744 5.53766 5.67974 5.76486 5.87847 5.94401 5.97679 6.04485 6.25809 6.36545 6.40727 6.61887 6.68079 6.75865 7.19591 7.50415 7.58118 7.62748 7.87824 7.92418 8.53662 9.15367 10.64352 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.006799 B = 0.004193 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4117.178362 B = 6675.936100 C =10235.402030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.268 3.732 3 C -0.194 4.194 4 C 0.164 3.836 5 C -0.292 4.292 6 C 0.124 3.876 7 N -0.296 5.296 8 C 0.244 3.756 9 C -0.538 4.538 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.889 5.889 13 Si 0.911 3.089 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.280 1.280 17 N -0.251 5.251 18 C 0.134 3.866 19 C -0.017 4.017 20 C -0.070 4.070 21 C -0.151 4.151 22 C 0.102 3.898 23 F -0.141 7.141 24 C -0.153 4.153 25 C -0.057 4.057 26 C 0.550 3.450 27 O -0.525 6.525 28 O -0.514 6.514 29 H 0.158 0.842 30 H 0.185 0.815 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.270 0.730 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.720 -8.228 2.049 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.045 4.045 3 C -0.201 4.201 4 C 0.140 3.860 5 C -0.304 4.304 6 C -0.034 4.034 7 N -0.067 5.067 8 C 0.128 3.872 9 C -0.576 4.576 10 H 0.090 0.910 11 C -0.137 4.137 12 N -0.527 5.527 13 Si 0.737 3.263 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.205 1.205 17 N -0.068 5.068 18 C -0.034 4.034 19 C -0.019 4.019 20 C -0.089 4.089 21 C -0.170 4.170 22 C 0.082 3.918 23 F -0.119 7.119 24 C -0.171 4.171 25 C -0.077 4.077 26 C 0.396 3.604 27 O -0.416 6.416 28 O -0.325 6.325 29 H 0.175 0.825 30 H 0.202 0.798 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 14.317 -6.417 1.908 15.805 hybrid contribution 0.533 -0.809 0.646 1.165 sum 14.850 -7.226 2.554 16.711 Atomic orbital electron populations 1.81322 1.11639 1.07094 1.10287 1.25237 0.92350 0.93400 0.93521 1.16638 0.84865 0.91172 1.27458 1.21305 0.99652 0.87739 0.77331 1.19109 0.95956 0.93078 1.22245 1.23969 0.95328 0.88859 0.95251 1.49553 1.13099 1.03901 1.40128 1.20164 0.73697 0.95438 0.97910 1.21149 1.06415 1.31036 0.98986 0.90969 1.24931 0.96078 0.96086 0.96606 1.69908 1.16112 1.42343 1.24304 0.86217 0.78902 0.79579 0.81562 1.19405 1.20445 1.20534 1.77471 0.93602 1.19800 1.15972 1.21902 0.93109 0.89852 0.98587 1.17763 0.90465 0.95431 0.98243 1.21102 0.93719 0.99177 0.94913 1.21037 0.96276 0.96691 1.02969 1.17839 0.81581 0.95487 0.96856 1.91501 1.41201 1.93248 1.85975 1.21083 0.96419 1.00551 0.99095 1.21159 0.93275 0.95216 0.98013 1.19949 0.85048 0.83453 0.71983 1.90927 1.14276 1.87906 1.48489 1.84657 1.44878 1.16918 1.86028 0.82511 0.79806 0.92481 0.91901 0.92014 0.84354 0.84180 0.84338 0.84108 0.72960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.37 17.37 41.84 0.73 -6.65 16 2 C 0.27 4.01 11.68 -22.47 -0.26 3.75 16 3 C -0.19 -2.41 5.89 -104.55 -0.62 -3.03 16 4 C 0.16 1.93 8.27 -38.26 -0.32 1.61 16 5 C -0.29 -4.31 5.90 -104.84 -0.62 -4.93 16 6 C 0.12 2.13 9.91 -16.41 -0.16 1.97 16 7 N -0.30 -5.98 3.62 -61.86 -0.22 -6.21 16 8 C 0.24 5.68 6.20 -5.19 -0.03 5.65 16 9 C -0.54 -13.99 9.20 -34.44 -0.32 -14.31 16 10 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -24.04 13.29 55.43 0.74 -23.31 16 13 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 N -0.25 -4.85 12.25 34.62 0.42 -4.43 16 18 C 0.13 2.10 6.94 -80.47 -0.56 1.54 16 19 C -0.02 -0.21 5.83 -104.91 -0.61 -0.83 16 20 C -0.07 -0.73 8.70 -39.24 -0.34 -1.07 16 21 C -0.15 -1.44 10.01 -39.56 -0.40 -1.84 16 22 C 0.10 1.07 7.30 -39.34 -0.29 0.78 16 23 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 24 C -0.15 -1.56 10.01 -39.57 -0.40 -1.95 16 25 C -0.06 -0.67 9.76 -39.24 -0.38 -1.05 16 26 C 0.55 6.30 8.24 34.20 0.28 6.58 16 27 O -0.52 -6.71 17.09 -19.34 -0.33 -7.04 16 28 O -0.51 -4.91 12.97 -40.91 -0.53 -5.44 16 29 H 0.16 1.49 6.50 -52.49 -0.34 1.15 16 30 H 0.19 3.09 4.99 -52.49 -0.26 2.83 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.48 8.04 -51.93 -0.42 1.06 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.14 1.24 6.67 -52.49 -0.35 0.89 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.41 1.82 9.11 45.56 0.42 2.23 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -30.59 357.78 -6.09 -36.69 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -2.19 Total: 2.43 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -5.11 Total: -5.46 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 1.66 Total: -40.59 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.86 Total: -12.48 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.59 -6.09 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006509613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.333 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds