Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48502 * 109.47089 * 269.99779 * 3 2 1 5 5 H 1.48494 * 109.47214 * 29.99881 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00181 * 3 2 1 7 7 C 1.37881 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99538 * 179.97438 * 7 2 1 9 9 C 1.50688 * 120.00171 * 0.02562 * 7 2 1 10 10 S 1.81007 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.76196 * 99.99988 * 179.97438 * 10 9 7 12 12 N 1.31407 * 126.36529 * 0.15670 * 11 10 9 13 13 N 1.28500 * 110.15373 * 180.30197 * 12 11 10 14 14 C 1.31512 * 109.94790 * 359.72976 * 13 12 11 15 15 C 1.47114 * 126.50162 * 179.97438 * 14 13 12 16 16 C 1.36268 * 125.96178 * 344.74531 * 15 14 13 17 17 C 1.40828 * 106.72561 * 179.85112 * 16 15 14 18 18 C 1.34788 * 107.07302 * 0.40365 * 17 16 15 19 19 O 1.34333 * 108.72669 * 359.74915 * 18 17 16 20 20 N 1.36681 * 126.36193 * 180.02562 * 11 10 9 21 21 C 1.46505 * 127.18768 * 359.97322 * 20 11 10 22 22 C 1.50703 * 109.47064 * 269.68736 * 21 20 11 23 23 C 1.38234 * 119.99770 * 269.72527 * 22 21 20 24 24 C 1.38239 * 119.99901 * 179.76875 * 23 22 21 25 25 C 1.38240 * 119.99645 * 0.50240 * 24 23 22 26 26 C 1.38227 * 120.00205 * 359.74956 * 25 24 23 27 27 C 1.38232 * 119.99860 * 89.99969 * 22 21 20 28 28 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47389 * 59.99727 * 9 7 2 30 30 H 1.09004 * 109.47124 * 299.99421 * 9 7 2 31 31 H 1.08002 * 126.63609 * 359.97438 * 16 15 14 32 32 H 1.07993 * 126.46326 * 180.17638 * 17 16 15 33 33 H 1.08003 * 125.63392 * 179.72772 * 18 17 16 34 34 H 1.09002 * 109.47068 * 29.68705 * 21 20 11 35 35 H 1.09001 * 109.47372 * 149.68793 * 21 20 11 36 36 H 1.08001 * 120.00330 * 359.97438 * 23 22 21 37 37 H 1.08001 * 119.99843 * 180.23314 * 24 23 22 38 38 H 1.08002 * 119.99612 * 179.72381 * 25 24 23 39 39 H 1.07996 * 120.00251 * 179.97438 * 26 25 24 40 40 H 1.07998 * 120.00407 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 16 2.4271 -3.8750 0.0021 11 6 1.3070 -5.2350 0.0026 12 7 -0.0052 -5.1638 -0.0009 13 7 -0.5127 -6.3443 0.0070 14 6 0.4458 -7.2447 0.0104 15 6 0.2739 -8.7058 0.0198 16 6 -0.8757 -9.3743 0.3169 17 6 -0.5877 -10.7478 0.1993 18 6 0.7098 -10.8516 -0.1507 19 8 1.2275 -9.6167 -0.2583 20 7 1.6414 -6.5603 0.0042 21 6 2.9897 -7.1333 0.0053 22 6 3.4495 -7.3385 -1.4152 23 6 3.1971 -8.5365 -2.0570 24 6 3.6146 -8.7230 -3.3616 25 6 4.2936 -7.7153 -4.0207 26 6 4.5506 -6.5193 -3.3771 27 6 4.1285 -6.3309 -2.0742 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 -1.8247 -8.9357 0.5880 32 1 -1.2757 -11.5641 0.3626 33 1 1.2448 -11.7749 -0.3167 34 1 3.6732 -6.4532 0.5137 35 1 2.9770 -8.0913 0.5250 36 1 2.6708 -9.3255 -1.5405 37 1 3.4141 -9.6576 -3.8643 38 1 4.6237 -7.8627 -5.0384 39 1 5.0814 -5.7322 -3.8919 40 1 4.3300 -5.3967 -1.5711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006790382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = 118.470003 kcal Electronic energy + Delta-G solvation = -26206.093950 eV Core-core repulsion = 22501.238627 eV Total energy + Delta-G solvation = -3704.855323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93394 -42.26759 -39.33582 -35.27406 -33.37328 -33.21617 -31.82798 -31.36720 -30.98120 -28.89846 -28.31900 -26.78831 -23.66263 -23.08366 -22.75306 -22.46180 -21.71650 -21.31025 -20.41444 -18.23624 -17.50592 -17.04820 -16.51216 -16.21384 -15.93077 -15.77767 -15.39082 -15.08220 -14.94123 -14.67917 -13.65543 -13.46269 -13.39315 -13.07904 -12.93120 -12.83257 -12.75449 -12.53367 -12.41690 -12.40918 -11.55313 -11.41481 -11.11925 -10.95900 -10.87808 -10.60788 -10.36634 -10.22710 -10.11397 -9.99950 -9.70750 -9.30511 -9.01076 -8.99001 -8.70534 -8.42413 -6.92091 -6.22405 -4.31334 0.89511 1.08768 1.31284 1.72466 2.02889 2.38603 2.52726 2.80991 3.23506 3.23733 3.28623 3.30170 3.39992 3.72498 4.27792 4.30392 4.43505 4.48208 4.76721 4.80400 4.87750 4.92808 5.04309 5.13948 5.17162 5.30249 5.41024 5.44987 5.47636 5.63477 5.77785 5.84508 5.87451 5.98039 6.11737 6.25123 6.33069 6.41286 6.46532 6.75420 6.82135 6.87676 7.07517 7.18700 7.64119 7.89157 8.69089 8.86091 9.32460 10.87843 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003453 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.900900 B = 8106.129157 C = 9859.712156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.078 3.922 10 S -0.047 6.047 11 C 0.194 3.806 12 N -0.282 5.282 13 N -0.248 5.248 14 C 0.225 3.775 15 C 0.064 3.936 16 C -0.151 4.151 17 C -0.207 4.207 18 C -0.034 4.034 19 O -0.174 6.174 20 N -0.460 5.460 21 C 0.151 3.849 22 C -0.119 4.119 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.122 4.122 27 C -0.087 4.087 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.208 0.792 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -22.885 -2.900 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.086 0.914 9 C -0.070 4.070 10 S 0.183 5.817 11 C -0.178 4.178 12 N -0.127 5.127 13 N -0.092 5.092 14 C -0.040 4.040 15 C 0.012 3.988 16 C -0.173 4.173 17 C -0.226 4.226 18 C -0.103 4.103 19 O -0.070 6.070 20 N -0.155 5.155 21 C 0.029 3.971 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.140 4.140 27 C -0.106 4.106 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.224 0.776 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.458 -22.032 -2.955 23.447 hybrid contribution 0.082 0.121 -0.065 0.160 sum 7.540 -21.911 -3.020 23.367 Atomic orbital electron populations 1.69977 1.06104 1.27573 1.47947 1.24935 0.94961 0.99156 0.94332 0.86346 0.79679 0.82174 0.78406 1.20257 1.20834 1.19517 1.20555 0.93239 0.88509 1.54501 0.91450 1.21391 0.93791 0.89062 1.02710 1.85377 1.11411 0.94292 1.90648 1.27501 0.97745 0.88490 1.04080 1.74915 1.03426 1.13504 1.20865 1.74407 1.24146 0.94650 1.15991 1.21199 0.82611 0.90023 1.10192 1.18346 0.88151 0.84491 1.07767 1.21840 0.98758 0.92704 1.03985 1.21791 0.96607 0.97042 1.07125 1.24181 0.94919 0.85858 1.05337 1.84055 1.38209 1.15453 1.69287 1.46648 1.07268 1.05175 1.56360 1.20787 0.80274 1.00898 0.95117 1.19860 1.01109 0.95378 0.95667 1.21356 0.98226 0.97110 0.95064 1.21110 0.99413 0.99362 0.94795 1.21238 0.98142 0.93681 0.99737 1.21194 1.00400 0.97539 0.94836 1.21318 0.95954 0.98310 0.95011 0.92214 0.92755 0.92743 0.82225 0.82754 0.77560 0.87247 0.87808 0.85034 0.86079 0.86024 0.85545 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.29 55.43 0.74 -24.80 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.53 -14.30 9.13 -34.44 -0.31 -14.62 16 8 H 0.07 1.76 7.71 -52.48 -0.40 1.35 16 9 C 0.08 2.02 4.98 36.00 0.18 2.19 16 10 S -0.05 -0.97 21.27 -107.50 -2.29 -3.26 16 11 C 0.19 4.00 8.07 -88.10 -0.71 3.29 16 12 N -0.28 -6.52 11.58 30.73 0.36 -6.17 16 13 N -0.25 -5.22 12.22 32.50 0.40 -4.82 16 14 C 0.22 3.99 7.89 -153.70 -1.21 2.77 16 15 C 0.06 0.90 7.01 -36.69 -0.26 0.64 16 16 C -0.15 -1.83 10.85 -39.31 -0.43 -2.26 16 17 C -0.21 -1.83 10.88 -39.83 -0.43 -2.26 16 18 C -0.03 -0.27 12.08 29.51 0.36 0.08 16 19 O -0.17 -1.94 6.22 4.32 0.03 -1.91 16 20 N -0.46 -7.92 2.83 -115.48 -0.33 -8.24 16 21 C 0.15 2.00 5.76 -5.19 -0.03 1.97 16 22 C -0.12 -1.55 5.46 -104.62 -0.57 -2.12 16 23 C -0.10 -1.17 9.57 -39.58 -0.38 -1.55 16 24 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.09 -1.15 9.70 -39.58 -0.38 -1.53 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.05 1.53 8.14 -51.92 -0.42 1.10 16 30 H 0.05 1.52 8.14 -51.91 -0.42 1.10 16 31 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.11 1.34 7.79 -51.93 -0.40 0.93 16 35 H 0.10 1.16 7.03 -51.93 -0.37 0.80 16 36 H 0.13 1.42 4.79 -52.49 -0.25 1.17 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.79 7.60 -52.49 -0.40 1.39 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -32.60 363.10 -10.46 -43.06 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.34 Total: 1.59 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -5.47 Total: -16.65 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 1.16 Total: -44.03 kcal Atomic # 8 Polarization: -1.94 SS G_CDS: 0.03 Total: -1.91 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.29 Total: -3.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.60 -10.46 -43.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006790382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.528 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds