Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48499 * 109.47418 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46882 * 299.99992 * 3 2 1 6 6 H 1.48500 * 109.46861 * 59.99606 * 3 2 1 7 7 C 1.38835 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99497 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.76198 * 99.99942 * 179.97438 * 9 7 2 11 11 N 1.31055 * 118.45907 * 359.95523 * 10 9 7 12 12 C 1.34517 * 121.76643 * 179.97438 * 11 10 9 13 13 N 1.33412 * 121.46290 * 180.02562 * 12 11 10 14 14 C 1.31809 * 119.64240 * 180.02562 * 13 12 11 15 15 C 1.39160 * 120.70854 * 0.02562 * 14 13 12 16 16 N 1.31814 * 120.53008 * 359.97438 * 15 14 13 17 17 C 1.32596 * 119.60531 * 359.97438 * 16 15 14 18 18 C 1.47354 * 121.76028 * 179.97438 * 17 16 15 19 19 O 1.21691 * 121.25271 * 0.04001 * 18 17 16 20 20 N 1.35325 * 117.48610 * 180.02562 * 18 17 16 21 21 C 1.46505 * 119.79602 * 180.02562 * 20 18 17 22 22 C 1.50702 * 109.47199 * 90.00325 * 21 20 18 23 23 C 1.38231 * 119.99702 * 269.72665 * 22 21 20 24 24 C 1.38236 * 119.99907 * 179.76323 * 23 22 21 25 25 C 1.38239 * 119.99901 * 0.50816 * 24 23 22 26 26 C 1.38233 * 119.99829 * 359.74657 * 25 24 23 27 27 C 1.38233 * 120.00291 * 359.97438 * 26 25 24 28 28 H 0.96992 * 120.00663 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.64546 * 180.02562 * 14 13 12 30 30 H 1.08001 * 119.73488 * 179.97438 * 15 14 13 31 31 H 1.09002 * 109.46818 * 210.00165 * 21 20 18 32 32 H 1.08998 * 109.47106 * 330.00075 * 21 20 18 33 33 H 1.08000 * 120.00573 * 359.97438 * 23 22 21 34 34 H 1.08005 * 120.00302 * 180.22833 * 24 23 22 35 35 H 1.07995 * 119.99779 * 179.72403 * 25 24 23 36 36 H 1.08005 * 119.99912 * 179.97438 * 26 25 24 37 37 H 1.07997 * 120.00175 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0092 -1.2024 0.0005 8 1 3.0892 -1.2023 0.0010 9 16 1.1282 -2.7283 0.0005 10 6 2.4780 -3.8608 0.0005 11 7 3.6970 -3.3796 -0.0004 12 6 4.7757 -4.1833 0.0001 13 7 6.0140 -3.6869 -0.0003 14 6 7.0454 -4.5076 -0.0004 15 6 6.8564 -5.8863 -0.0005 16 7 5.6406 -6.3956 -0.0001 17 6 4.5910 -5.5853 0.0009 18 6 3.2115 -6.1031 0.0009 19 8 2.9859 -7.2989 0.0006 20 7 2.2049 -5.1986 0.0015 21 6 0.8136 -5.6577 0.0020 22 6 0.3372 -5.8153 1.4230 23 6 0.4887 -7.0262 2.0725 24 6 0.0561 -7.1693 3.3776 25 6 -0.5375 -6.1048 4.0297 26 6 -0.6938 -4.8955 3.3784 27 6 -0.2560 -4.7506 2.0753 28 1 -0.4851 0.8399 -0.0004 29 1 8.0478 -4.1058 -0.0003 30 1 7.7128 -6.5444 -0.0010 31 1 0.1895 -4.9263 -0.5114 32 1 0.7473 -6.6166 -0.5119 33 1 0.9482 -7.8593 1.5615 34 1 0.1779 -8.1143 3.8863 35 1 -0.8795 -6.2180 5.0478 36 1 -1.1580 -4.0639 3.8878 37 1 -0.3785 -3.8060 1.5663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006818529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = 71.019041 kcal Electronic energy + Delta-G solvation = -26293.622400 eV Core-core repulsion = 22548.595016 eV Total energy + Delta-G solvation = -3745.027384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48098 -39.80788 -38.68346 -37.16277 -34.65241 -33.84303 -33.03534 -31.31775 -30.73600 -30.21335 -26.99654 -26.10740 -25.47869 -24.51717 -22.70150 -22.18531 -21.37337 -19.96370 -18.77616 -18.18738 -17.29985 -16.88768 -16.24786 -15.95255 -15.44032 -15.38244 -15.22187 -15.00172 -14.86819 -14.40633 -14.05683 -13.35802 -13.31564 -13.17807 -13.11497 -12.61404 -12.48568 -12.17123 -11.72816 -11.39608 -11.35438 -11.29557 -11.25743 -10.94110 -10.84427 -10.54895 -10.35988 -9.84809 -9.78084 -9.60862 -9.27787 -8.76272 -8.74576 -8.40637 -8.29336 -7.29075 -6.83536 -4.57686 0.51507 0.92422 1.33070 1.57605 2.02515 2.53594 2.82683 2.89576 3.03738 3.07936 3.18194 3.68445 3.94989 4.03867 4.19816 4.32861 4.56104 4.65757 4.66287 4.82735 4.87367 5.00818 5.14001 5.25359 5.29443 5.34692 5.37894 5.57263 5.61501 5.70586 5.79266 6.10052 6.16412 6.22348 6.53056 6.59024 6.65676 6.67417 6.79475 7.13866 7.27138 7.47826 7.78119 8.02982 8.18023 8.47738 8.72064 10.22675 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.007762 B = 0.006149 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3606.500502 B = 4552.687443 C = 7453.977627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.080 3.920 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.125 0.875 9 S 0.219 5.781 10 C 0.336 3.664 11 N -0.527 5.527 12 C 0.352 3.648 13 N -0.451 5.451 14 C 0.123 3.877 15 C -0.017 4.017 16 N -0.361 5.361 17 C -0.078 4.078 18 C 0.575 3.425 19 O -0.500 6.500 20 N -0.529 5.529 21 C 0.134 3.866 22 C -0.116 4.116 23 C -0.094 4.094 24 C -0.131 4.131 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.092 4.092 28 H 0.281 0.719 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -7.993 2.925 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.132 4.132 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.143 0.857 9 S 0.465 5.535 10 C -0.029 4.029 11 N -0.258 5.258 12 C 0.104 3.896 13 N -0.170 5.170 14 C -0.048 4.048 15 C -0.186 4.186 16 N -0.077 5.077 17 C -0.226 4.226 18 C 0.364 3.636 19 O -0.372 6.372 20 N -0.255 5.255 21 C 0.012 3.988 22 C -0.117 4.117 23 C -0.112 4.112 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.111 4.111 28 H 0.091 0.909 29 H 0.190 0.810 30 H 0.186 0.814 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.640 -7.872 2.889 8.410 hybrid contribution 1.941 0.351 0.086 1.975 sum 1.301 -7.521 2.975 8.192 Atomic orbital electron populations 1.69863 1.06344 1.29434 1.44059 1.25247 0.95218 1.00270 0.92425 0.85801 0.80541 0.79488 0.78211 1.18298 1.20047 1.20060 1.23952 0.98706 0.88903 1.57491 0.85712 1.83403 0.98669 0.96576 1.74897 1.26360 0.99541 0.85423 0.91530 1.68589 0.94308 1.32204 1.30721 1.20234 0.92398 0.87218 0.89777 1.68419 0.97305 1.37717 1.13591 1.24032 0.98703 0.91334 0.90752 1.23557 0.94832 0.94832 1.05373 1.67796 0.98391 1.38540 1.02976 1.22128 0.94133 0.92220 1.14111 1.17891 0.83680 0.85644 0.76409 1.90775 1.84304 1.13958 1.48142 1.46578 1.08393 1.05674 1.64807 1.20852 0.79672 1.03329 0.94981 1.19955 1.01116 0.94688 0.95965 1.21186 0.97958 0.97227 0.94862 1.21096 0.99935 0.98965 0.94943 1.21197 0.98943 0.93435 0.99625 1.21187 1.00443 0.97531 0.94990 1.21609 0.95796 0.98583 0.95091 0.90925 0.81046 0.81362 0.87235 0.87368 0.85550 0.86258 0.86294 0.85723 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.10 13.22 55.49 0.73 -20.37 16 2 C 0.08 1.93 5.49 -17.47 -0.10 1.83 16 3 Si 0.94 19.28 29.55 -169.99 -5.02 14.26 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.54 -13.37 9.23 30.95 0.29 -13.08 16 8 H 0.13 3.25 6.48 -52.48 -0.34 2.91 16 9 S 0.22 4.61 16.79 -107.50 -1.81 2.81 16 10 C 0.34 7.06 7.77 -88.53 -0.69 6.37 16 11 N -0.53 -12.08 8.34 -12.46 -0.10 -12.19 16 12 C 0.35 7.59 7.65 -157.47 -1.20 6.38 16 13 N -0.45 -8.83 10.56 -12.46 -0.13 -8.97 16 14 C 0.12 1.78 11.20 -17.22 -0.19 1.59 16 15 C -0.02 -0.24 11.21 -17.22 -0.19 -0.43 16 16 N -0.36 -6.81 10.37 -9.33 -0.10 -6.91 16 17 C -0.08 -1.62 6.80 -82.62 -0.56 -2.18 16 18 C 0.57 11.75 7.69 -12.30 -0.09 11.65 16 19 O -0.50 -10.46 16.34 5.20 0.08 -10.38 16 20 N -0.53 -10.04 2.61 -118.55 -0.31 -10.35 16 21 C 0.13 2.09 5.09 -5.19 -0.03 2.07 16 22 C -0.12 -1.80 5.46 -104.62 -0.57 -2.38 16 23 C -0.09 -1.39 9.70 -39.58 -0.38 -1.77 16 24 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 25 C -0.11 -1.43 10.05 -39.58 -0.40 -1.83 16 26 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 27 C -0.09 -1.42 9.28 -39.58 -0.37 -1.79 16 28 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 29 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 1.58 6.42 -51.93 -0.33 1.25 16 32 H 0.11 1.55 7.41 -51.93 -0.38 1.16 16 33 H 0.13 1.87 7.67 -52.49 -0.40 1.47 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.14 2.28 5.64 -52.49 -0.30 1.99 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -30.35 338.02 -9.85 -40.20 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.01 Total: 4.58 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -5.29 Total: 2.21 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.09 Total: -58.78 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.81 Total: 2.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.35 -9.85 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006818529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.220 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds