Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38316 * 119.92294 * 2 1 4 4 C 1.38060 * 120.08165 * 179.72009 * 3 2 1 5 5 C 1.38993 * 119.91814 * 0.02562 * 4 3 2 6 6 S 1.76198 * 120.07719 * 180.02562 * 5 4 3 7 7 C 1.81404 * 103.00305 * 359.97438 * 6 5 4 8 8 C 1.50696 * 109.47082 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00279 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99948 * 179.97438 * 8 7 6 11 11 C 1.37137 * 119.99632 * 354.95339 * 10 8 7 12 12 H 1.08002 * 120.00108 * 332.86004 * 11 10 8 13 13 C 1.38887 * 119.99984 * 152.87368 * 11 10 8 14 14 N 1.31425 * 120.00137 * 157.86172 * 13 11 10 15 15 Si 1.86806 * 119.99890 * 337.85651 * 13 11 10 16 16 H 1.48501 * 109.47127 * 85.74493 * 15 13 11 17 17 H 1.48497 * 109.46851 * 205.74441 * 15 13 11 18 18 H 1.48496 * 109.47099 * 325.74340 * 15 13 11 19 19 C 1.39784 * 120.00195 * 174.95142 * 10 8 7 20 20 C 1.38960 * 120.07842 * 297.86561 * 19 10 8 21 21 C 1.38089 * 119.92331 * 179.79008 * 20 19 10 22 22 C 1.38302 * 120.07297 * 0.46613 * 21 20 19 23 23 C 1.38309 * 120.16129 * 359.78673 * 22 21 20 24 24 C 1.38084 * 120.07515 * 359.97438 * 23 22 21 25 25 C 1.38951 * 119.84278 * 359.97438 * 5 4 3 26 26 C 1.50697 * 120.04155 * 179.97438 * 25 5 4 27 27 C 1.38098 * 119.91727 * 0.02562 * 25 5 4 28 28 H 1.08996 * 109.47178 * 89.99689 * 1 2 3 29 29 H 1.09001 * 109.47679 * 210.00275 * 1 2 3 30 30 H 1.08997 * 109.47204 * 329.99713 * 1 2 3 31 31 H 1.08002 * 119.96208 * 359.74667 * 3 2 1 32 32 H 1.08004 * 120.03656 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46757 * 299.99616 * 7 6 5 34 34 H 1.08997 * 109.46983 * 60.00034 * 7 6 5 35 35 H 0.96999 * 119.99612 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.04029 * 0.02562 * 20 19 10 37 37 H 1.08000 * 119.96012 * 180.25532 * 21 20 19 38 38 H 1.08004 * 119.91840 * 179.77112 * 22 21 20 39 39 H 1.08004 * 119.96258 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.03648 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.47350 * 89.99963 * 26 25 5 42 42 H 1.08998 * 109.47112 * 210.00018 * 26 25 5 43 43 H 1.09006 * 109.47353 * 329.99704 * 26 25 5 44 44 H 1.07997 * 119.96238 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1988 0.0000 4 6 3.5775 1.2026 0.0058 5 6 4.2741 -0.0002 0.0112 6 16 6.0360 -0.0002 0.0193 7 6 6.4442 1.7674 0.0173 8 6 7.9416 1.9371 0.0232 9 8 8.6625 0.9618 0.0287 10 7 8.4797 3.1728 0.0223 11 6 7.6692 4.2735 -0.0884 12 1 6.7186 4.1954 -0.5950 13 6 8.0710 5.4888 0.4507 14 7 7.5548 6.6103 0.0001 15 14 9.3450 5.5293 1.8163 16 1 10.7065 5.5222 1.2235 17 1 9.1639 6.7611 2.6257 18 1 9.1772 4.3369 2.6853 19 6 9.8639 3.3325 0.1343 20 6 10.5255 2.8942 1.2750 21 6 11.8935 3.0496 1.3804 22 6 12.6038 3.6494 0.3564 23 6 11.9479 4.0917 -0.7781 24 6 10.5807 3.9351 -0.8923 25 6 3.5776 -1.2025 0.0112 26 6 4.3283 -2.5092 0.0164 27 6 2.1967 -1.1986 0.0053 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6550 2.1330 -0.0041 32 1 4.1155 2.1391 0.0063 33 1 6.0294 2.2350 -0.8757 34 1 6.0212 2.2389 0.9043 35 1 7.8352 7.4590 0.3769 36 1 9.9709 2.4290 2.0765 37 1 12.4089 2.7054 2.2648 38 1 13.6732 3.7730 0.4431 39 1 12.5058 4.5593 -1.5759 40 1 10.0691 4.2810 -1.7784 41 1 4.5058 -2.8222 1.0452 42 1 3.7394 -3.2686 -0.4980 43 1 5.2828 -2.3820 -0.4945 44 1 1.6546 -2.1327 0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006916800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = 26.434355 kcal Electronic energy + Delta-G solvation = -26323.141007 eV Core-core repulsion = 22717.835062 eV Total energy + Delta-G solvation = -3605.305945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.119 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.93647 -39.27495 -37.76115 -35.06306 -33.50644 -32.24862 -32.21617 -30.42130 -30.29944 -28.26900 -27.36681 -26.65972 -25.14272 -22.43590 -22.07017 -21.94020 -20.80864 -19.31140 -18.22593 -17.32867 -16.38570 -15.99922 -15.71768 -15.49598 -15.04218 -15.01725 -14.37402 -14.30255 -14.05610 -13.89205 -13.71825 -13.25993 -13.16929 -12.98189 -12.87700 -12.83892 -12.62889 -12.37295 -12.32530 -12.05452 -11.96092 -11.64427 -11.35888 -11.12433 -11.01251 -10.92924 -10.75223 -10.65190 -10.08566 -9.71759 -9.47098 -9.32243 -9.08451 -8.69734 -8.55217 -8.32791 -7.77709 -7.03704 -6.68805 -4.27442 1.28972 1.43214 1.70002 1.86100 1.94892 2.76665 3.07375 3.22352 3.25930 3.40966 3.70622 4.05687 4.09188 4.33220 4.76144 4.83454 4.87617 4.94861 5.24670 5.29069 5.38517 5.43000 5.47875 5.49619 5.51896 5.57984 5.64806 5.66496 5.67457 5.73351 5.86205 5.90370 5.96328 6.01948 6.11251 6.22761 6.26779 6.36185 6.52264 6.54661 6.62641 6.84265 7.00337 7.00790 7.05004 7.16062 7.51034 7.74668 8.04263 8.63617 9.04342 9.32854 10.38538 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.003144 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.350130 B = 8902.865273 C =10069.041747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.106 4.106 4 C -0.127 4.127 5 C -0.100 4.100 6 S -0.047 6.047 7 C -0.120 4.120 8 C 0.495 3.505 9 O -0.563 6.563 10 N -0.414 5.414 11 C -0.361 4.361 12 H 0.113 0.887 13 C 0.080 3.920 14 N -0.846 5.846 15 Si 0.860 3.140 16 H -0.251 1.251 17 H -0.291 1.291 18 H -0.260 1.260 19 C 0.158 3.842 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.068 4.068 26 C -0.116 4.116 27 C -0.107 4.107 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.279 0.721 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -9.030 0.574 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.125 4.125 4 C -0.151 4.151 5 C -0.213 4.213 6 S 0.198 5.802 7 C -0.271 4.271 8 C 0.284 3.716 9 O -0.446 6.446 10 N -0.129 5.129 11 C -0.486 4.486 12 H 0.131 0.869 13 C -0.130 4.130 14 N -0.479 5.479 15 Si 0.686 3.314 16 H -0.175 1.175 17 H -0.219 1.219 18 H -0.184 1.184 19 C 0.066 3.934 20 C -0.146 4.146 21 C -0.135 4.135 22 C -0.157 4.157 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.074 4.074 26 C -0.173 4.173 27 C -0.126 4.126 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.857 -10.154 0.564 11.270 hybrid contribution -0.539 1.755 0.704 1.966 sum -5.396 -8.399 1.268 10.063 Atomic orbital electron populations 1.20740 0.91358 1.02501 1.02064 1.19856 0.95868 0.93133 1.01374 1.20913 0.93685 0.97537 1.00392 1.21304 0.94897 0.96943 1.01941 1.22063 0.98757 0.95842 1.04658 1.85858 0.95187 1.07978 1.91128 1.23658 0.99076 0.96690 1.07670 1.19431 0.88162 0.83124 0.80887 1.90638 1.61881 1.38318 1.53736 1.41380 1.02284 1.05912 1.63361 1.19160 1.04001 0.86207 1.39256 0.86919 1.25179 0.96745 0.94577 0.96462 1.69760 1.42080 0.97949 1.38155 0.87170 0.83237 0.77944 0.83091 1.17514 1.21869 1.18411 1.17637 0.84337 0.97903 0.93539 1.21187 0.94963 1.01371 0.97041 1.20851 0.93530 1.00198 0.98959 1.20962 0.99249 1.00819 0.94648 1.20918 0.94056 1.00327 0.97966 1.21181 0.93599 0.99974 0.98171 1.19464 0.93376 0.93702 1.00869 1.20787 1.00280 0.93524 1.02677 1.20777 0.92885 0.97450 1.01526 0.91432 0.91809 0.91687 0.85975 0.85361 0.87221 0.86781 0.91052 0.86280 0.86413 0.86645 0.86299 0.85413 0.90852 0.91475 0.90705 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 2 C -0.10 -1.17 5.88 -104.58 -0.62 -1.79 16 3 C -0.11 -1.37 9.69 -39.62 -0.38 -1.76 16 4 C -0.13 -1.89 9.36 -39.37 -0.37 -2.26 16 5 C -0.10 -1.56 6.11 -39.04 -0.24 -1.80 16 6 S -0.05 -0.82 19.27 -107.50 -2.07 -2.89 16 7 C -0.12 -2.29 3.50 36.00 0.13 -2.17 16 8 C 0.49 11.23 7.47 -10.98 -0.08 11.15 16 9 O -0.56 -13.84 15.43 5.55 0.09 -13.75 16 10 N -0.41 -9.76 2.49 -58.98 -0.15 -9.91 16 11 C -0.36 -8.94 9.12 -14.94 -0.14 -9.08 16 12 H 0.11 2.82 6.90 -52.49 -0.36 2.45 16 13 C 0.08 2.05 5.20 -17.49 -0.09 1.96 16 14 N -0.85 -22.38 13.96 55.49 0.77 -21.60 16 15 Si 0.86 20.08 23.47 -169.99 -3.99 16.10 16 16 H -0.25 -5.74 5.26 56.52 0.30 -5.44 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.26 -6.08 6.11 56.52 0.35 -5.73 16 19 C 0.16 3.60 2.29 -83.70 -0.19 3.41 16 20 C -0.13 -2.69 5.86 -39.37 -0.23 -2.92 16 21 C -0.12 -2.13 9.55 -39.61 -0.38 -2.51 16 22 C -0.14 -2.35 9.73 -39.53 -0.38 -2.73 16 23 C -0.11 -2.05 9.63 -39.61 -0.38 -2.43 16 24 C -0.11 -2.31 8.48 -39.37 -0.33 -2.65 16 25 C -0.07 -0.93 5.90 -104.41 -0.62 -1.54 16 26 C -0.12 -1.35 9.57 36.00 0.34 -1.01 16 27 C -0.11 -1.28 9.34 -39.61 -0.37 -1.65 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.92 5.88 -52.48 -0.31 1.61 16 33 H 0.11 2.00 7.09 -51.92 -0.37 1.63 16 34 H 0.11 2.09 7.75 -51.93 -0.40 1.69 16 35 H 0.28 6.97 8.31 -40.82 -0.34 6.64 16 36 H 0.12 2.59 7.72 -52.49 -0.40 2.18 16 37 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.13 2.69 8.06 -52.48 -0.42 2.27 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.07 0.96 6.79 -51.93 -0.35 0.61 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -29.20 369.12 -9.89 -39.09 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.14 Total: 7.77 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -3.97 Total: -20.36 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.63 Total: -31.51 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -3.99 Total: 16.10 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.07 Total: -2.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.20 -9.89 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006916800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.527 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds