Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.38378 * 126.39470 * 269.71271 * 4 3 2 6 6 C 1.38691 * 133.89153 * 0.02562 * 5 4 3 7 7 C 1.37952 * 119.85256 * 179.97438 * 6 5 4 8 8 C 1.38750 * 120.46019 * 359.97159 * 7 6 5 9 9 S 1.76197 * 119.74466 * 180.02562 * 8 7 6 10 10 N 1.65596 * 107.21901 * 90.00295 * 9 8 7 11 11 O 1.42101 * 106.40281 * 203.54706 * 9 8 7 12 12 O 1.42098 * 106.40023 * 336.46338 * 9 8 7 13 13 C 1.37633 * 120.51528 * 359.64869 * 8 7 6 14 14 C 1.39835 * 119.76944 * 0.58845 * 13 8 7 15 15 N 1.35665 * 133.37969 * 179.26973 * 14 13 8 16 16 C 1.31080 * 109.63497 * 179.97438 * 15 14 13 17 17 S 1.76204 * 125.08908 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00125 * 0.03873 * 17 16 15 19 19 H 1.08004 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38748 * 120.00157 * 180.02562 * 18 17 16 21 21 N 1.31573 * 119.99506 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47302 * 120.00296 * 22 20 18 25 25 H 1.48505 * 109.46865 * 240.00299 * 22 20 18 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 33 33 H 1.07990 * 120.07269 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.76788 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99862 * 0.02562 * 10 9 8 36 36 H 0.97003 * 120.00107 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.11688 * 179.87503 * 13 8 7 38 38 H 0.97008 * 119.99175 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3265 1.4479 1.1129 6 6 4.0930 1.4541 2.4800 7 6 5.1569 1.4580 3.3583 8 6 6.4607 1.4552 2.8838 9 16 7.8053 1.4595 4.0224 10 7 8.1786 -0.1210 4.3462 11 8 8.9195 2.0004 3.3256 12 8 7.3042 2.0096 5.2330 13 6 6.7119 1.4411 1.5306 14 6 5.6453 1.4422 0.6264 15 7 5.5722 1.4434 -0.7283 16 6 4.3157 1.4434 -1.1016 17 16 3.7553 1.4455 -2.7721 18 6 5.3030 1.4461 -3.6141 19 1 6.2243 1.4448 -3.0504 20 6 5.3383 1.4483 -5.0011 21 7 4.2159 1.4504 -5.6876 22 14 6.9792 1.4482 -5.8936 23 1 8.0831 1.4463 -4.9003 24 1 7.0785 0.2370 -6.7471 25 1 7.0806 2.6621 -6.7432 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.0807 1.4559 2.8561 34 1 4.9735 1.4624 4.4226 35 1 7.6757 -0.8345 3.9233 36 1 8.9007 -0.3333 4.9582 37 1 7.7294 1.4410 1.1683 38 1 4.2406 1.4522 -6.6574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006979163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = -19.066428 kcal Electronic energy + Delta-G solvation = -24525.861355 eV Core-core repulsion = 20814.652861 eV Total energy + Delta-G solvation = -3711.208494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.63633 -37.26827 -37.07202 -35.76705 -35.40973 -33.24136 -32.80875 -32.34409 -30.25036 -29.26639 -26.35155 -25.81422 -23.51017 -22.50669 -21.94014 -20.43629 -19.53800 -18.42377 -18.05076 -17.39446 -17.07021 -16.43600 -16.04678 -15.47627 -15.26739 -15.09577 -15.01436 -14.59438 -14.24024 -13.83965 -13.53812 -13.18000 -13.01938 -12.46751 -12.24813 -12.13203 -12.04752 -11.99383 -11.89214 -11.56680 -11.48164 -11.38986 -11.21627 -11.14322 -10.88440 -10.82717 -10.55769 -10.26963 -10.18613 -9.52146 -9.42611 -9.07815 -8.68307 -8.11839 -6.89259 -6.59952 -4.34487 0.45540 0.98844 1.25095 2.28803 2.97373 3.09393 3.12416 3.17359 3.22053 3.27567 3.60391 3.89626 3.99624 4.41125 4.64309 4.74630 4.81065 4.86043 4.93022 5.02692 5.13140 5.19734 5.37597 5.38546 5.47484 5.53622 5.61128 5.73058 5.88853 5.89454 5.94930 6.04382 6.14908 6.18011 6.58405 6.67818 6.91933 6.95288 7.25749 7.46593 8.24823 8.34148 8.93490 10.48253 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.003756 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.864513 B = 7453.940238 C = 9775.659338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.112 3.888 4 N -0.489 5.489 5 C 0.086 3.914 6 C -0.121 4.121 7 C -0.043 4.043 8 C -0.683 4.683 9 S 2.708 3.292 10 N -1.252 6.252 11 O -0.967 6.967 12 O -0.971 6.971 13 C 0.032 3.968 14 C 0.051 3.949 15 N -0.499 5.499 16 C 0.266 3.734 17 S 0.148 5.852 18 C -0.536 4.536 19 H 0.110 0.890 20 C 0.077 3.923 21 N -0.876 5.876 22 Si 0.933 3.067 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.417 0.583 36 H 0.417 0.583 37 H 0.144 0.856 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -4.565 15.800 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.010 4.010 4 N -0.181 5.181 5 C -0.028 4.028 6 C -0.144 4.144 7 C -0.066 4.066 8 C -0.775 4.775 9 S 2.799 3.201 10 N -0.926 5.926 11 O -0.957 6.957 12 O -0.960 6.960 13 C 0.009 3.991 14 C -0.072 4.072 15 N -0.223 5.223 16 C -0.102 4.102 17 S 0.386 5.614 18 C -0.684 4.684 19 H 0.128 0.872 20 C -0.133 4.133 21 N -0.511 5.511 22 Si 0.758 3.242 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.203 1.203 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.158 0.842 35 H 0.244 0.756 36 H 0.246 0.754 37 H 0.162 0.838 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.890 -3.600 14.756 15.679 hybrid contribution 0.841 -0.690 -0.020 1.088 sum -3.049 -4.291 14.736 15.648 Atomic orbital electron populations 1.21678 0.94380 1.02307 1.02130 1.21916 0.96641 0.95916 1.03608 1.21878 0.75997 0.98655 1.04498 1.45532 1.06511 1.62021 1.04019 1.19175 0.91724 1.02506 0.89371 1.19853 0.99387 1.06351 0.88772 1.20318 0.89870 0.97095 0.99324 1.29927 1.14475 1.24054 1.08998 1.01208 0.73366 0.72115 0.73446 1.53107 1.49833 1.26910 1.62763 1.93601 1.50934 1.76616 1.74518 1.93572 1.80882 1.76410 1.45146 1.19968 0.98468 0.91286 0.89363 1.19316 0.91771 1.04650 0.91510 1.71184 1.16515 1.26282 1.08340 1.27324 0.87360 0.98097 0.97437 1.83510 1.12740 1.84345 0.80843 1.23359 0.93019 1.58717 0.93300 0.87219 1.25112 0.98771 0.93221 0.96202 1.69922 1.26571 1.46366 1.08194 0.85862 0.81323 0.78022 0.79027 1.18745 1.20278 1.20262 0.92687 0.91952 0.92094 0.90320 0.91632 0.88322 0.89548 0.85827 0.84182 0.75604 0.75382 0.83830 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.95 16 2 C -0.14 -1.66 6.26 -26.73 -0.17 -1.83 16 3 C 0.11 1.47 5.94 -4.04 -0.02 1.45 16 4 N -0.49 -8.61 2.83 -114.29 -0.32 -8.93 16 5 C 0.09 1.50 6.87 -83.86 -0.58 0.93 16 6 C -0.12 -1.67 10.04 -39.52 -0.40 -2.06 16 7 C -0.04 -0.56 9.50 -39.50 -0.38 -0.93 16 8 C -0.68 -9.41 5.94 -39.61 -0.24 -9.64 16 9 S 2.71 32.34 6.27 -107.50 -0.67 31.67 16 10 N -1.25 -9.55 9.55 60.35 0.58 -8.97 16 11 O -0.97 -14.99 17.26 -57.17 -0.99 -15.98 16 12 O -0.97 -13.72 17.26 -57.17 -0.99 -14.70 16 13 C 0.03 0.54 9.56 -39.21 -0.37 0.17 16 14 C 0.05 1.00 7.22 -84.69 -0.61 0.39 16 15 N -0.50 -11.55 9.96 -10.86 -0.11 -11.66 16 16 C 0.27 5.78 7.92 -88.34 -0.70 5.08 16 17 S 0.15 3.47 21.13 -107.50 -2.27 1.20 16 18 C -0.54 -14.35 9.35 30.92 0.29 -14.06 16 19 H 0.11 3.05 6.85 -52.48 -0.36 2.69 16 20 C 0.08 2.01 5.49 -17.47 -0.10 1.91 16 21 N -0.88 -23.49 13.22 55.49 0.73 -22.76 16 22 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 23 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.31 7.68 -51.93 -0.40 0.91 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 1.44 7.59 -52.48 -0.40 1.04 16 35 H 0.42 2.42 8.92 -34.46 -0.31 2.11 16 36 H 0.42 2.33 8.96 -34.47 -0.31 2.02 16 37 H 0.14 2.32 7.59 -52.48 -0.40 1.92 16 38 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -34.68 355.18 -10.88 -45.56 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.27 Total: 3.18 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -2.90 Total: -19.55 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.88 Total: -52.33 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.97 Total: -30.68 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 35.81 SS G_CDS: -2.95 Total: 32.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.68 -10.88 -45.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006979163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.495 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds