Wall clock time and date at job start Tue Mar 31 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.38378 * 126.39470 * 269.71271 * 4 3 2 6 6 C 1.38691 * 133.89153 * 0.02562 * 5 4 3 7 7 C 1.37952 * 119.85256 * 179.97438 * 6 5 4 8 8 C 1.38750 * 120.46019 * 359.97159 * 7 6 5 9 9 S 1.76197 * 119.74466 * 180.02562 * 8 7 6 10 10 N 1.65596 * 107.21901 * 90.00295 * 9 8 7 11 11 O 1.42101 * 106.40281 * 203.54706 * 9 8 7 12 12 O 1.42098 * 106.40023 * 336.46338 * 9 8 7 13 13 C 1.37633 * 120.51528 * 359.64869 * 8 7 6 14 14 C 1.39835 * 119.76944 * 0.58845 * 13 8 7 15 15 N 1.35665 * 133.37969 * 179.26973 * 14 13 8 16 16 C 1.31080 * 109.63497 * 179.97438 * 15 14 13 17 17 S 1.76204 * 125.08908 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00125 * 0.03873 * 17 16 15 19 19 H 1.08004 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38748 * 120.00157 * 180.02562 * 18 17 16 21 21 N 1.31573 * 119.99506 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47269 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47302 * 120.00296 * 22 20 18 25 25 H 1.48505 * 109.46865 * 240.00299 * 22 20 18 26 26 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 33 33 H 1.07990 * 120.07269 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.76788 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99862 * 0.02562 * 10 9 8 36 36 H 0.97003 * 120.00107 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.11688 * 179.87503 * 13 8 7 38 38 H 0.97008 * 119.99175 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3265 1.4479 1.1129 6 6 4.0930 1.4541 2.4800 7 6 5.1569 1.4580 3.3583 8 6 6.4607 1.4552 2.8838 9 16 7.8053 1.4595 4.0224 10 7 8.1786 -0.1210 4.3462 11 8 8.9195 2.0004 3.3256 12 8 7.3042 2.0096 5.2330 13 6 6.7119 1.4411 1.5306 14 6 5.6453 1.4422 0.6264 15 7 5.5722 1.4434 -0.7283 16 6 4.3157 1.4434 -1.1016 17 16 3.7553 1.4455 -2.7721 18 6 5.3030 1.4461 -3.6141 19 1 6.2243 1.4448 -3.0504 20 6 5.3383 1.4483 -5.0011 21 7 4.2159 1.4504 -5.6876 22 14 6.9792 1.4482 -5.8936 23 1 8.0831 1.4463 -4.9003 24 1 7.0785 0.2370 -6.7471 25 1 7.0806 2.6621 -6.7432 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.0807 1.4559 2.8561 34 1 4.9735 1.4624 4.4226 35 1 7.6757 -0.8345 3.9233 36 1 8.9007 -0.3333 4.9582 37 1 7.7294 1.4410 1.1683 38 1 4.2406 1.4522 -6.6574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006979163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:50 Heat of formation + Delta-G solvation = -44.734334 kcal Electronic energy + Delta-G solvation = -24526.974399 eV Core-core repulsion = 20814.652861 eV Total energy + Delta-G solvation = -3712.321537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.03613 -38.49700 -38.18301 -36.87984 -36.56944 -34.78720 -33.99212 -33.52424 -31.44182 -30.61533 -27.82753 -27.38018 -24.88794 -23.72995 -22.99380 -21.71358 -20.56671 -20.02896 -19.25074 -18.37032 -18.28249 -17.85513 -17.05769 -16.98922 -16.64876 -16.61248 -16.06228 -15.90471 -15.54821 -15.01422 -14.86582 -14.50910 -14.20929 -13.49588 -13.34622 -13.27503 -13.17640 -13.14165 -13.10911 -13.04046 -13.02062 -12.92180 -12.69476 -12.41833 -12.07713 -11.99741 -11.78985 -11.47238 -11.33541 -11.29581 -11.07211 -10.85467 -10.19312 -9.41778 -8.63588 -8.56718 -6.34254 -0.57336 -0.28901 0.00342 0.67898 1.34128 1.35043 1.51328 1.60682 1.75204 2.09843 2.20866 2.46907 2.82044 2.85859 2.94026 3.27299 3.61492 3.63315 3.84844 3.90437 4.10134 4.18680 4.22219 4.26823 4.37375 4.51342 4.62503 4.80305 4.82870 4.98584 5.08047 5.14537 5.30129 5.32643 5.36100 5.39323 5.47514 5.67227 5.92958 6.20709 6.39265 6.80152 6.92824 8.52873 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.003756 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.864513 B = 7453.940238 C = 9775.659338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.102 3.898 4 N -0.479 5.479 5 C 0.081 3.919 6 C -0.113 4.113 7 C -0.029 4.029 8 C -0.673 4.673 9 S 2.741 3.259 10 N -1.234 6.234 11 O -1.004 7.004 12 O -0.984 6.984 13 C 0.020 3.980 14 C 0.001 3.999 15 N -0.540 5.540 16 C 0.251 3.749 17 S 0.126 5.874 18 C -0.561 4.561 19 H 0.088 0.912 20 C 0.035 3.965 21 N -0.902 5.902 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.264 1.264 25 H -0.266 1.266 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.166 0.834 34 H 0.180 0.820 35 H 0.429 0.571 36 H 0.430 0.570 37 H 0.138 0.862 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 -5.063 19.074 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C -0.018 4.018 4 N -0.170 5.170 5 C -0.033 4.033 6 C -0.135 4.135 7 C -0.051 4.051 8 C -0.763 4.763 9 S 2.829 3.171 10 N -0.914 5.914 11 O -0.993 6.993 12 O -0.973 6.973 13 C -0.002 4.002 14 C -0.120 4.120 15 N -0.265 5.265 16 C -0.120 4.120 17 S 0.361 5.639 18 C -0.709 4.709 19 H 0.106 0.894 20 C -0.171 4.171 21 N -0.538 5.538 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.189 1.189 25 H -0.191 1.191 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.184 0.816 34 H 0.197 0.803 35 H 0.259 0.741 36 H 0.263 0.737 37 H 0.156 0.844 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.735 -4.111 18.078 19.135 hybrid contribution 1.155 -0.565 -0.676 1.452 sum -3.580 -4.676 17.402 18.372 Atomic orbital electron populations 1.21654 0.91934 1.03182 1.03091 1.21858 0.98589 0.94477 1.02430 1.22294 0.73494 1.00086 1.05946 1.45699 1.07877 1.60578 1.02881 1.19559 0.90528 1.02542 0.90643 1.20352 1.01847 1.04551 0.86770 1.20895 0.88915 0.94141 1.01136 1.30234 1.16108 1.22170 1.07817 1.00190 0.72033 0.72605 0.72235 1.52645 1.50374 1.25446 1.62923 1.93568 1.52224 1.78228 1.75257 1.93558 1.80938 1.77563 1.45286 1.20070 0.97781 0.91949 0.90417 1.19719 0.94181 1.07438 0.90675 1.71014 1.17947 1.26607 1.10967 1.26841 0.87997 0.99691 0.97468 1.83113 1.11539 1.86824 0.82415 1.23427 0.93735 1.59590 0.94167 0.89437 1.25888 1.01953 0.92700 0.96606 1.69976 1.28090 1.47041 1.08651 0.84999 0.77078 0.78819 0.77740 1.19795 1.18873 1.19071 0.90407 0.92300 0.91295 0.93364 0.90957 0.88999 0.85911 0.81616 0.80310 0.74131 0.73704 0.84417 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.13 -3.00 6.26 30.59 0.19 -2.80 16 3 C 0.10 2.56 5.94 86.38 0.51 3.07 16 4 N -0.48 -16.87 2.83 -515.51 -1.46 -18.33 16 5 C 0.08 2.73 6.87 38.79 0.27 3.00 16 6 C -0.11 -2.67 10.04 22.31 0.22 -2.45 16 7 C -0.03 -0.62 9.50 22.32 0.21 -0.41 16 8 C -0.67 -17.03 5.94 22.25 0.13 -16.89 16 9 S 2.74 58.73 6.27 -56.49 -0.35 58.38 16 10 N -1.23 -15.04 9.55 37.02 0.35 -14.68 16 11 O -1.00 -30.02 17.26 -128.00 -2.21 -32.23 16 12 O -0.98 -24.44 17.26 -128.00 -2.21 -26.64 16 13 C 0.02 0.69 9.56 22.51 0.22 0.90 16 14 C 0.00 0.06 7.22 39.51 0.29 0.34 16 15 N -0.54 -26.42 9.96 -188.29 -1.88 -28.30 16 16 C 0.25 11.43 7.92 179.55 1.42 12.85 16 17 S 0.13 6.23 21.13 -56.49 -1.19 5.03 16 18 C -0.56 -31.81 9.35 67.94 0.64 -31.18 16 19 H 0.09 5.22 6.85 -2.91 -0.02 5.20 16 20 C 0.04 1.91 5.49 84.85 0.47 2.38 16 21 N -0.90 -49.87 13.22 21.64 0.29 -49.58 16 22 Si 0.99 43.55 29.55 68.60 2.03 45.57 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 2.44 7.68 -2.39 -0.02 2.42 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.17 2.54 8.06 -2.92 -0.02 2.52 16 34 H 0.18 2.57 7.59 -2.91 -0.02 2.55 16 35 H 0.43 3.59 8.92 -96.75 -0.86 2.73 16 36 H 0.43 3.44 8.96 -96.74 -0.87 2.57 16 37 H 0.14 4.64 7.59 -2.91 -0.02 4.62 16 38 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -79.76 355.18 -1.96 -81.72 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -0.60 Total: 11.73 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 5.28 Total: -32.67 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -2.70 Total: -110.89 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -4.42 Total: -58.87 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 64.96 SS G_CDS: -1.55 Total: 63.41 kcal Total: -79.76 -1.96 -81.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006979163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.982 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds