Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99951 * 2 1 4 4 C 1.50694 * 109.46934 * 269.99860 * 3 2 1 5 5 H 1.07992 * 120.00229 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99637 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99975 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99926 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46886 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47145 * 120.00096 * 8 6 4 11 11 H 1.48496 * 109.47249 * 240.00446 * 8 6 4 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21291 * 120.00281 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00360 * 0.02562 * 12 2 1 15 15 S 1.81001 * 109.47552 * 179.97438 * 14 12 2 16 16 C 1.76198 * 100.00083 * 179.97438 * 15 14 12 17 17 N 1.31284 * 126.48334 * 359.97438 * 16 15 14 18 18 N 1.28530 * 109.85721 * 179.97438 * 17 16 15 19 19 C 1.30304 * 110.07562 * 359.97438 * 18 17 16 20 20 C 1.50696 * 126.33812 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47055 * 90.02600 * 20 19 18 22 22 C 1.50706 * 109.47238 * 179.97438 * 21 20 19 23 23 N 1.34774 * 120.00020 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99507 * 0.02562 * 22 21 20 25 25 N 1.36539 * 126.48386 * 180.24374 * 16 15 14 26 26 C 1.46500 * 127.14165 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47353 * 269.99830 * 1 2 3 28 28 H 1.09003 * 109.47323 * 30.00061 * 1 2 3 29 29 H 1.08999 * 109.47069 * 150.00218 * 1 2 3 30 30 H 1.09000 * 109.47036 * 30.00028 * 3 2 1 31 31 H 1.08998 * 109.47067 * 149.99598 * 3 2 1 32 32 H 0.96998 * 119.99694 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46787 * 59.99705 * 14 12 2 34 34 H 1.09000 * 109.46863 * 299.99975 * 14 12 2 35 35 H 1.09001 * 109.47328 * 330.02870 * 20 19 18 36 36 H 1.09004 * 109.47043 * 210.02680 * 20 19 18 37 37 H 1.09001 * 109.46832 * 59.99966 * 21 20 19 38 38 H 1.09000 * 109.47611 * 300.00263 * 21 20 19 39 39 H 0.96994 * 119.99756 * 0.02562 * 23 22 21 40 40 H 0.97000 * 119.99529 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.46551 * 270.14219 * 26 25 16 42 42 H 1.08993 * 109.47338 * 30.15025 * 26 25 16 43 43 H 1.09006 * 109.46772 * 150.15053 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4380 3.4169 -3.4338 9 1 2.8609 2.4163 -4.3672 10 1 2.7999 4.7372 -3.6679 11 1 4.9006 3.5257 -3.6665 12 6 2.1388 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 16 2.5616 -3.8481 0.0005 16 6 1.4416 -5.2082 0.0013 17 7 0.1305 -5.1398 0.0022 18 7 -0.3685 -6.3243 0.0020 19 6 0.5858 -7.2116 0.0004 20 6 0.4130 -8.7087 0.0002 21 6 0.3533 -9.2149 -1.4423 22 6 0.1811 -10.7121 -1.4425 23 7 0.1035 -11.3813 -2.6098 24 8 0.1126 -11.3147 -0.3923 25 7 1.7730 -6.5328 0.0062 26 6 3.1205 -7.1074 0.0125 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1498 1.1384 0.5139 32 1 4.0301 4.4440 -0.8503 33 1 0.7591 -2.5302 -0.8897 34 1 0.7584 -2.5299 0.8903 35 1 -0.5123 -8.9678 0.5148 36 1 1.2560 -9.1717 0.5132 37 1 1.2786 -8.9558 -1.9569 38 1 -0.4896 -8.7519 -1.9553 39 1 0.1587 -10.8994 -3.4497 40 1 -0.0077 -12.3450 -2.6099 41 1 3.4591 -7.2505 -1.0137 42 1 3.8016 -6.4311 0.5289 43 1 3.1033 -8.0684 0.5267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007786144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = 2.310264 kcal Electronic energy + Delta-G solvation = -26118.329289 eV Core-core repulsion = 22133.420733 eV Total energy + Delta-G solvation = -3984.908556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.07048 -39.99535 -39.02484 -35.42913 -34.95684 -34.31492 -34.07646 -32.71186 -30.55490 -29.79177 -27.94759 -27.45191 -25.80213 -25.58131 -23.01604 -22.71542 -21.38311 -20.67963 -18.91041 -17.98611 -17.81769 -17.22248 -16.67104 -16.58728 -16.56816 -16.42650 -15.88977 -15.34562 -15.10900 -14.86468 -14.29448 -13.98401 -13.92535 -13.79554 -13.50418 -13.28584 -13.11379 -12.74235 -12.63359 -12.23782 -12.02489 -11.89735 -11.83208 -11.76986 -11.26507 -10.98053 -10.90501 -10.63553 -10.58557 -10.49892 -10.31786 -10.24586 -10.20294 -9.98724 -9.66512 -9.20023 -8.47383 -7.79674 -7.65190 -6.08219 -4.13141 0.93464 1.39645 1.99149 2.09335 2.34728 2.57040 2.99599 3.18504 3.27995 3.35708 3.40055 3.83729 3.94661 4.24167 4.26446 4.37920 4.41557 4.59007 4.69749 4.82091 4.89295 4.97348 4.99013 5.14921 5.25765 5.26867 5.42456 5.47111 5.62333 5.67327 5.76626 5.90887 6.19895 6.20978 6.44849 6.73997 6.93445 7.35732 7.42838 7.69920 7.87385 8.17330 8.23755 8.45536 8.76445 8.94327 9.51923 10.99968 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.001938 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.379636 B =14447.115459 C =14690.620120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.591 5.591 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.522 3.478 13 O -0.530 6.530 14 C -0.138 4.138 15 S 0.077 5.923 16 C 0.148 3.852 17 N -0.296 5.296 18 N -0.279 5.279 19 C 0.173 3.827 20 C -0.012 4.012 21 C -0.139 4.139 22 C 0.521 3.479 23 N -0.856 5.856 24 O -0.542 6.542 25 N -0.464 5.464 26 C 0.069 3.931 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.403 0.597 40 H 0.403 0.597 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 -27.632 -2.125 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.305 3.695 13 O -0.408 6.408 14 C -0.291 4.291 15 S 0.304 5.696 16 C -0.226 4.226 17 N -0.141 5.141 18 N -0.119 5.119 19 C -0.096 4.096 20 C -0.052 4.052 21 C -0.180 4.180 22 C 0.306 3.694 23 N -0.420 5.420 24 O -0.419 6.419 25 N -0.158 5.158 26 C -0.074 4.074 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.232 0.768 40 H 0.233 0.767 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.984 -27.011 -1.289 27.497 hybrid contribution -0.045 -0.290 -1.511 1.539 sum -5.029 -27.301 -2.800 27.902 Atomic orbital electron populations 1.21749 0.80857 1.03042 1.00931 1.48072 1.06522 1.07264 1.70455 1.19386 0.92646 0.77594 0.97781 1.21452 1.36669 1.06355 0.92188 0.92290 1.24943 0.95300 0.96350 0.97529 1.69943 1.38289 1.14325 1.30689 0.86424 0.78092 0.78330 0.84473 1.19775 1.20944 1.20838 1.19332 0.87673 0.84026 0.78432 1.90717 1.13182 1.86497 1.50395 1.23863 1.01811 0.94635 1.08745 1.86225 1.01974 0.89305 1.92060 1.27453 0.98112 0.89654 1.07418 1.74710 1.03105 1.15506 1.20735 1.73920 1.25475 0.94995 1.17485 1.24890 0.81198 0.97433 1.06124 1.19682 1.05983 0.83186 0.96393 1.21642 1.05370 0.92158 0.98855 1.20540 0.75098 0.90069 0.83717 1.43882 1.77226 1.12164 1.08699 1.90780 1.49518 1.70298 1.31257 1.46273 1.08644 1.04987 1.55864 1.22198 0.79800 1.00802 1.04559 0.93242 0.90333 0.92097 0.94581 0.93579 0.92708 0.86130 0.86271 0.87305 0.89086 0.88624 0.87603 0.76847 0.76663 0.89564 0.88451 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.84 0.61 1.84 16 2 N -0.59 -12.30 2.86 -182.96 -0.52 -12.82 16 3 C 0.24 6.29 5.16 -5.19 -0.03 6.26 16 4 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.72 5.46 -17.81 -0.10 1.63 16 7 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 10.58 7.69 -10.99 -0.08 10.49 16 13 O -0.53 -12.82 15.44 5.55 0.09 -12.73 16 14 C -0.14 -2.13 4.27 36.01 0.15 -1.98 16 15 S 0.08 1.11 20.95 -107.50 -2.25 -1.14 16 16 C 0.15 2.01 8.07 -88.34 -0.71 1.30 16 17 N -0.30 -4.57 11.60 30.68 0.36 -4.21 16 18 N -0.28 -4.00 12.18 32.99 0.40 -3.59 16 19 C 0.17 1.87 7.32 -153.99 -1.13 0.74 16 20 C -0.01 -0.09 4.88 -27.89 -0.14 -0.23 16 21 C -0.14 -0.71 5.68 -27.88 -0.16 -0.87 16 22 C 0.52 3.25 8.10 -10.98 -0.09 3.17 16 23 N -0.86 -2.47 8.87 31.22 0.28 -2.19 16 24 O -0.54 -5.69 16.82 5.56 0.09 -5.59 16 25 N -0.46 -4.87 3.21 -120.91 -0.39 -5.26 16 26 C 0.07 0.42 10.91 59.85 0.65 1.07 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.12 1.73 7.40 -51.91 -0.38 1.35 16 34 H 0.12 1.65 8.11 -51.92 -0.42 1.23 16 35 H 0.11 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.09 0.57 7.22 -51.93 -0.37 0.19 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.40 0.10 8.83 -40.82 -0.36 -0.26 16 40 H 0.40 0.92 8.93 -40.82 -0.36 0.56 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.60 7.86 -51.93 -0.41 0.19 16 43 H 0.09 0.36 7.25 -51.93 -0.38 -0.02 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -38.47 385.64 -7.66 -46.14 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -5.90 Total: -3.87 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -1.34 Total: 8.34 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.86 Total: -53.57 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.18 Total: -18.32 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.25 Total: -1.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.47 -7.66 -46.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007786144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.446 kcal (2) G-P(sol) polarization free energy of solvation -38.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds