Wall clock time and date at job start Tue Mar 31 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48497 * 109.46948 * 239.99606 * 3 2 1 5 5 H 1.48493 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47063 * 119.99753 * 3 2 1 7 7 C 1.37875 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00214 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99979 * 0.02562 * 7 2 1 10 10 S 1.81000 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.76198 * 100.00052 * 179.97438 * 10 9 7 12 12 N 1.31263 * 126.38157 * 0.16804 * 11 10 9 13 13 N 1.28495 * 110.13249 * 180.24269 * 12 11 10 14 14 C 1.31342 * 109.98495 * 359.75199 * 13 12 11 15 15 C 1.47679 * 126.48198 * 180.02562 * 14 13 12 16 16 C 1.35800 * 126.67952 * 186.47175 * 15 14 13 17 17 N 1.36494 * 109.71121 * 179.89121 * 16 15 14 18 18 H 0.96995 * 124.90080 * 180.16151 * 17 16 15 19 19 C 1.37810 * 110.19689 * 0.38571 * 17 16 15 20 20 C 1.39171 * 133.27789 * 179.80048 * 19 17 16 21 21 C 1.37756 * 119.78550 * 180.02562 * 20 19 17 22 22 C 1.38785 * 120.63920 * 359.95539 * 21 20 19 23 23 C 1.36712 * 120.47164 * 0.02562 * 22 21 20 24 24 C 1.39363 * 119.79140 * 0.02562 * 23 22 21 25 25 N 1.36796 * 126.38381 * 179.97438 * 11 10 9 26 26 C 1.46502 * 127.19534 * 0.04078 * 25 11 10 27 27 C 1.53003 * 117.49928 * 52.73479 * 26 25 11 28 28 C 1.53001 * 60.03319 * 252.47688 * 27 26 25 29 29 H 0.96997 * 120.00120 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47063 * 59.99638 * 9 7 2 31 31 H 1.09001 * 109.47060 * 299.99536 * 9 7 2 32 32 H 1.08003 * 125.14167 * 0.03667 * 16 15 14 33 33 H 1.08006 * 120.10555 * 0.03464 * 20 19 17 34 34 H 1.08006 * 119.68030 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.76520 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.09998 * 179.97438 * 23 22 21 37 37 H 1.08993 * 115.55183 * 198.40518 * 26 25 11 38 38 H 1.09005 * 117.49564 * 359.97438 * 27 26 25 39 39 H 1.08997 * 117.50118 * 144.97252 * 27 26 25 40 40 H 1.09001 * 117.50014 * 107.49557 * 28 27 26 41 41 H 1.08998 * 117.50005 * 252.52333 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4272 -3.8749 0.0005 11 6 1.3071 -5.2351 0.0013 12 7 -0.0036 -5.1644 -0.0014 13 7 -0.5103 -6.3452 0.0053 14 6 0.4471 -7.2444 0.0073 15 6 0.2741 -8.7110 0.0141 16 6 1.2541 -9.6428 0.1389 17 7 0.7078 -10.8931 0.1030 18 1 1.2093 -11.7202 0.1758 19 6 -0.6586 -10.8109 -0.0567 20 6 -1.6666 -11.7653 -0.1561 21 6 -2.9750 -11.3646 -0.3154 22 6 -3.2993 -10.0166 -0.3772 23 6 -2.3238 -9.0637 -0.2812 24 6 -0.9938 -9.4480 -0.1207 25 7 1.6414 -6.5616 0.0011 26 6 2.9895 -7.1352 0.0010 27 6 3.9613 -6.6558 1.0812 28 6 4.1518 -6.2107 -0.3702 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 2.3063 -9.4271 0.2521 33 1 -1.4240 -12.8166 -0.1082 34 1 -3.7559 -12.1067 -0.3927 35 1 -4.3298 -9.7183 -0.5020 36 1 -2.5829 -8.0164 -0.3304 37 1 3.0568 -8.1777 -0.3096 38 1 3.5977 -5.9133 1.7916 39 1 4.6676 -7.3831 1.4814 40 1 3.9135 -5.1756 -0.6147 41 1 4.9832 -6.6456 -0.9250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007789738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:50 Heat of formation + Delta-G solvation = 167.916437 kcal Electronic energy + Delta-G solvation = -25653.335380 eV Core-core repulsion = 22048.342878 eV Total energy + Delta-G solvation = -3604.992503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42429 -41.31993 -37.70878 -37.06851 -33.18320 -33.06555 -32.23568 -30.33519 -29.54421 -28.76843 -28.23845 -24.52501 -23.39885 -23.00078 -22.70224 -22.41611 -21.79642 -21.12949 -19.85119 -18.15371 -17.44077 -16.75197 -16.37109 -15.92546 -15.68622 -15.65022 -14.89712 -14.67740 -14.63009 -14.50673 -13.98053 -13.81796 -13.48311 -13.09895 -12.76370 -12.41533 -12.33419 -11.88269 -11.86068 -11.81982 -11.73412 -11.24909 -11.00383 -10.89748 -10.83317 -10.77313 -10.47060 -10.46648 -10.02581 -9.61220 -9.58352 -9.21470 -9.02645 -8.59500 -8.45059 -7.82392 -6.77706 -6.16769 -4.25438 0.84001 1.40509 1.71049 1.78815 2.59149 2.65527 2.81414 3.27675 3.31463 3.32094 3.41446 3.43673 3.58522 3.86305 4.19718 4.30557 4.34607 4.43595 4.54629 4.59157 4.67742 4.91978 5.02676 5.05762 5.19092 5.39116 5.43649 5.47125 5.48525 5.51407 5.75009 5.85307 5.96095 6.04970 6.12519 6.29410 6.32873 6.38933 6.53615 6.61331 6.96828 7.04150 7.17024 7.17952 7.27938 7.69613 7.96725 8.75139 9.09745 9.37857 10.93517 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018084 B = 0.002757 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.964883 B =10154.221974 C =11616.890643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.065 3.935 10 S -0.043 6.043 11 C 0.177 3.823 12 N -0.282 5.282 13 N -0.274 5.274 14 C 0.243 3.757 15 C -0.084 4.084 16 C 0.062 3.938 17 N -0.585 5.585 18 H 0.419 0.581 19 C 0.095 3.905 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.148 4.148 23 C -0.053 4.053 24 C -0.076 4.076 25 N -0.444 5.444 26 C 0.045 3.955 27 C -0.173 4.173 28 C -0.178 4.178 29 H 0.268 0.732 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.175 0.825 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -25.705 0.110 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.084 0.916 9 C -0.082 4.082 10 S 0.187 5.813 11 C -0.195 4.195 12 N -0.126 5.126 13 N -0.115 5.115 14 C -0.023 4.023 15 C -0.095 4.095 16 C -0.068 4.068 17 N -0.188 5.188 18 H 0.256 0.744 19 C -0.011 4.011 20 C -0.156 4.156 21 C -0.114 4.114 22 C -0.167 4.167 23 C -0.072 4.072 24 C -0.081 4.081 25 N -0.138 5.138 26 C -0.060 4.060 27 C -0.212 4.212 28 C -0.216 4.216 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.192 0.808 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.304 -24.990 0.114 25.358 hybrid contribution 0.630 -0.102 0.037 0.639 sum 4.934 -25.092 0.151 25.573 Atomic orbital electron populations 1.69974 1.06092 1.27555 1.48072 1.24942 0.94947 0.99123 0.94438 0.86427 0.79425 0.81986 0.78879 1.19889 1.20956 1.19888 1.20533 0.93117 0.88697 1.54322 0.91637 1.21457 0.94314 0.89923 1.02487 1.85210 1.10697 0.94123 1.91287 1.27330 0.97799 0.88135 1.06254 1.74786 1.03272 1.14517 1.19981 1.74297 1.24589 0.94778 1.17827 1.21817 0.81242 0.92674 1.06583 1.17293 0.92712 0.86043 1.13410 1.21960 0.98115 0.83001 1.03772 1.41539 1.05594 1.07612 1.64067 0.74378 1.18220 0.83590 0.95014 1.04287 1.19975 0.91284 0.97297 1.07056 1.20844 0.95062 0.96184 0.99303 1.20732 0.99475 0.92634 1.03835 1.20566 0.90294 1.00860 0.95435 1.18722 0.92853 0.90744 1.05788 1.45916 1.06107 1.04993 1.56792 1.22122 0.77468 0.98147 1.08275 1.23508 1.00400 1.04152 0.93098 1.23883 0.97323 1.02265 0.98147 0.92245 0.92979 0.92988 0.80811 0.86216 0.85721 0.85738 0.84560 0.84038 0.87053 0.87197 0.85141 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.55 9.13 -34.44 -0.31 -14.86 16 8 H 0.07 1.73 7.71 -52.48 -0.40 1.33 16 9 C 0.06 1.73 4.99 36.01 0.18 1.90 16 10 S -0.04 -0.91 17.81 -107.50 -1.91 -2.82 16 11 C 0.18 3.73 7.90 -88.11 -0.70 3.03 16 12 N -0.28 -6.71 11.57 30.73 0.36 -6.35 16 13 N -0.27 -5.93 11.94 32.57 0.39 -5.54 16 14 C 0.24 4.38 7.97 -153.77 -1.23 3.15 16 15 C -0.08 -1.21 6.28 -103.24 -0.65 -1.86 16 16 C 0.06 0.62 10.95 -16.35 -0.18 0.44 16 17 N -0.59 -4.79 6.04 -10.38 -0.06 -4.86 16 18 H 0.42 1.79 8.96 -40.82 -0.37 1.42 16 19 C 0.09 1.04 7.26 -83.98 -0.61 0.43 16 20 C -0.14 -1.24 10.08 -39.41 -0.40 -1.64 16 21 C -0.09 -0.87 10.01 -39.56 -0.40 -1.27 16 22 C -0.15 -1.62 9.98 -39.93 -0.40 -2.02 16 23 C -0.05 -0.73 10.04 -39.71 -0.40 -1.13 16 24 C -0.08 -1.06 6.36 -104.95 -0.67 -1.73 16 25 N -0.44 -7.59 3.19 -106.98 -0.34 -7.93 16 26 C 0.04 0.53 6.24 -67.89 -0.42 0.10 16 27 C -0.17 -1.81 10.05 -26.73 -0.27 -2.08 16 28 C -0.18 -2.00 9.71 -26.69 -0.26 -2.26 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.05 1.50 8.14 -51.92 -0.42 1.08 16 31 H 0.05 1.50 8.14 -51.92 -0.42 1.07 16 32 H 0.18 1.15 5.24 -52.48 -0.27 0.88 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 2.08 7.77 -52.49 -0.41 1.67 16 37 H 0.14 1.17 5.12 -51.93 -0.27 0.90 16 38 H 0.11 1.44 7.98 -51.93 -0.41 1.03 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.13 1.89 4.32 -27.84 -0.12 1.77 16 41 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -34.91 359.26 -11.59 -46.50 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.35 Total: 2.74 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -6.80 Total: -17.90 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 1.08 Total: -49.96 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -1.91 Total: -2.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.91 -11.59 -46.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007789738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.418 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds