Wall clock time and date at job start Tue Mar 31 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48500 * 109.46898 * 269.99644 * 3 2 1 5 5 H 1.48493 * 109.47570 * 29.99762 * 3 2 1 6 6 H 1.48505 * 109.47277 * 149.99970 * 3 2 1 7 7 C 1.37884 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99583 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99737 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46717 * 180.02562 * 9 7 2 11 11 C 1.35609 * 124.77873 * 265.28039 * 10 9 7 12 12 C 1.36667 * 109.69449 * 180.17115 * 11 10 9 13 13 C 1.46374 * 126.78411 * 179.86120 * 12 11 10 14 14 C 1.35450 * 120.00231 * 359.69085 * 13 12 11 15 15 C 1.41495 * 119.99969 * 179.72162 * 14 13 12 16 16 O 1.21782 * 120.00455 * 355.30721 * 15 14 13 17 17 N 1.34781 * 119.99782 * 175.30442 * 15 14 13 18 18 C 1.47143 * 120.98504 * 4.97622 * 17 15 14 19 19 C 1.53714 * 108.16179 * 129.43085 * 18 17 15 20 20 O 1.42962 * 109.14378 * 52.54139 * 19 18 17 21 21 C 1.42960 * 114.16693 * 297.28779 * 20 19 18 22 22 C 1.47152 * 120.98010 * 185.26338 * 17 15 14 23 23 C 1.47516 * 106.42751 * 359.60282 * 12 11 10 24 24 C 1.39254 * 133.96869 * 180.24053 * 23 12 11 25 25 C 1.37768 * 119.67800 * 179.97438 * 24 23 12 26 26 C 1.38748 * 120.29477 * 0.04872 * 25 24 23 27 27 C 1.37774 * 120.63268 * 359.94906 * 26 25 24 28 28 C 1.37990 * 124.78132 * 85.00166 * 10 9 7 29 29 H 0.97001 * 119.99950 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46822 * 60.00471 * 9 7 2 31 31 H 1.09001 * 109.47158 * 300.00389 * 9 7 2 32 32 H 1.07996 * 125.15391 * 0.03703 * 11 10 9 33 33 H 1.08010 * 120.00023 * 179.68781 * 13 12 11 34 34 H 1.08000 * 120.00280 * 359.97438 * 14 13 12 35 35 H 1.08997 * 109.68747 * 249.21532 * 18 17 15 36 36 H 1.09001 * 109.67933 * 9.76833 * 18 17 15 37 37 H 1.08997 * 109.65652 * 292.57461 * 19 18 17 38 38 H 1.09004 * 109.48631 * 172.40440 * 19 18 17 39 39 H 1.09001 * 109.51020 * 302.65495 * 21 20 19 40 40 H 1.09007 * 109.54998 * 182.53234 * 21 20 19 41 41 H 1.09003 * 109.68179 * 350.23318 * 22 17 15 42 42 H 1.09000 * 109.68510 * 110.74896 * 22 17 15 43 43 H 1.08001 * 120.16142 * 359.97438 * 24 23 12 44 44 H 1.08000 * 119.85616 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.68042 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.03100 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.3445 -3.2738 1.1102 12 6 4.7602 -4.5265 0.7555 13 6 5.2182 -5.5857 1.6560 14 6 5.2651 -5.3658 2.9917 15 6 5.7023 -6.3917 3.8626 16 8 5.9548 -7.4984 3.4216 17 7 5.8394 -6.1440 5.1804 18 6 5.4380 -4.8496 5.7536 19 6 4.5318 -5.1224 6.9649 20 8 5.1925 -6.0305 7.8496 21 6 5.4527 -7.3162 7.2814 22 6 6.4008 -7.1578 6.0873 23 6 4.6499 -4.6023 -0.7136 24 6 4.9137 -5.5960 -1.6529 25 6 4.6994 -5.3444 -2.9904 26 6 4.2242 -4.1078 -3.4026 27 6 3.9591 -3.1158 -2.4840 28 6 4.1686 -3.3506 -1.1289 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 4.2995 -2.8966 2.1211 33 1 5.5188 -6.5426 1.2553 34 1 4.9649 -4.4089 3.3924 35 1 6.3231 -4.2981 6.0705 36 1 4.8921 -4.2715 5.0081 37 1 3.5922 -5.5606 6.6285 38 1 4.3310 -4.1868 7.4868 39 1 4.5164 -7.7624 6.9463 40 1 5.9149 -7.9593 8.0305 41 1 6.4927 -8.1089 5.5628 42 1 7.3815 -6.8351 6.4367 43 1 5.2843 -6.5591 -1.3344 44 1 4.9034 -6.1128 -3.7213 45 1 4.0602 -3.9212 -4.4538 46 1 3.5891 -2.1569 -2.8157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008023771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:09 Heat of formation + Delta-G solvation = 5.949315 kcal Electronic energy + Delta-G solvation = -28382.825517 eV Core-core repulsion = 24431.597065 eV Total energy + Delta-G solvation = -3951.228452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.97837 -40.37809 -38.42445 -36.74908 -34.82994 -34.47907 -33.05614 -31.87340 -31.05389 -29.99341 -28.60229 -28.23240 -26.99074 -24.72858 -23.77231 -22.93155 -22.28409 -21.47985 -20.70365 -19.42401 -18.23837 -17.75826 -17.30487 -16.64817 -16.26471 -16.14542 -15.74872 -15.52367 -15.29128 -15.15812 -14.83326 -14.68530 -14.05754 -13.98272 -13.65121 -13.46833 -13.31613 -13.26091 -12.73748 -12.60105 -12.58229 -12.09872 -12.07128 -11.71868 -11.66295 -11.47079 -11.16910 -11.08378 -10.95587 -10.89786 -10.60722 -10.44866 -10.40305 -10.02245 -9.75490 -9.65622 -8.95723 -8.84935 -8.62164 -7.82355 -6.96183 -6.42871 -4.48924 0.97795 1.64745 2.08385 2.86577 3.01485 3.07154 3.08153 3.10871 3.43688 3.54165 3.73635 4.05706 4.31808 4.48017 4.63353 4.75570 4.81799 4.84345 4.97047 4.98196 5.01609 5.08688 5.19925 5.29799 5.34113 5.37902 5.42425 5.51114 5.56334 5.60831 5.67556 5.75259 5.92595 6.00238 6.10243 6.20266 6.22659 6.25609 6.32829 6.55231 6.67215 6.80005 6.86460 6.93844 7.07596 7.08635 7.19995 7.36283 7.65768 7.68512 8.11411 8.26699 8.61288 9.11411 10.69092 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.003078 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.460571 B = 9093.315323 C =11615.799412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.082 3.918 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.203 3.797 10 N -0.433 5.433 11 C 0.131 3.869 12 C -0.222 4.222 13 C 0.087 3.913 14 C -0.301 4.301 15 C 0.567 3.433 16 O -0.561 6.561 17 N -0.623 5.623 18 C 0.073 3.927 19 C 0.046 3.954 20 O -0.382 6.382 21 C 0.048 3.952 22 C 0.078 3.922 23 C -0.083 4.083 24 C -0.087 4.087 25 C -0.144 4.144 26 C -0.117 4.117 27 C -0.103 4.103 28 C 0.097 3.903 29 H 0.271 0.729 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.170 0.830 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 -8.411 7.665 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.101 0.899 9 C 0.083 3.917 10 N -0.107 5.107 11 C -0.006 4.006 12 C -0.229 4.229 13 C 0.066 3.934 14 C -0.322 4.322 15 C 0.363 3.637 16 O -0.443 6.443 17 N -0.358 5.358 18 C -0.050 4.050 19 C -0.032 4.032 20 O -0.300 6.300 21 C -0.030 4.030 22 C -0.045 4.045 23 C -0.087 4.087 24 C -0.105 4.105 25 C -0.162 4.162 26 C -0.136 4.136 27 C -0.123 4.123 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.187 0.813 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.404 -8.421 7.586 16.078 hybrid contribution 0.019 1.145 -0.156 1.156 sum 11.423 -7.276 7.429 15.447 Atomic orbital electron populations 1.69869 1.06209 1.27628 1.47970 1.24833 0.94819 0.98901 0.93812 0.86903 0.80287 0.83733 0.79183 1.19581 1.20381 1.18923 1.21165 0.87847 0.95667 1.54289 0.89930 1.20205 0.97100 0.75439 0.98910 1.44312 1.48973 1.13509 1.03911 1.22203 0.95230 0.91156 0.91966 1.18863 1.17660 0.95010 0.91350 1.21620 0.84686 0.95546 0.91528 1.21462 1.15901 1.00695 0.94155 1.17047 0.76938 0.88364 0.81340 1.90783 1.52845 1.24810 1.75866 1.47983 1.64646 1.15522 1.07625 1.22565 0.99890 0.85715 0.96852 1.23100 0.94569 0.94499 0.91026 1.87947 1.79227 1.23619 1.39256 1.22987 0.98811 0.85455 0.95722 1.22196 0.96836 0.94349 0.91080 1.18991 1.03581 0.93797 0.92325 1.20334 1.00487 0.97705 0.92006 1.20805 1.02967 0.97220 0.95254 1.20720 1.01017 0.93229 0.98665 1.20197 1.02098 1.00455 0.89568 1.18253 1.02761 0.90962 0.88833 0.91920 0.93369 0.94080 0.81315 0.85402 0.85976 0.90604 0.88004 0.92337 0.87522 0.92588 0.87818 0.88108 0.91033 0.86454 0.86451 0.86154 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.83 13.96 55.43 0.77 -24.06 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 18.82 27.47 -169.99 -4.67 14.15 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.32 6.54 56.52 0.37 -4.95 16 7 C -0.55 -14.16 9.94 -34.44 -0.34 -14.50 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.20 4.28 4.77 -5.19 -0.02 4.26 16 10 N -0.43 -8.49 2.73 -115.37 -0.31 -8.81 16 11 C 0.13 2.23 10.66 -16.45 -0.18 2.05 16 12 C -0.22 -3.69 6.24 -103.41 -0.65 -4.34 16 13 C 0.09 1.31 9.67 -37.31 -0.36 0.95 16 14 C -0.30 -4.12 8.70 -39.34 -0.34 -4.47 16 15 C 0.57 8.28 7.46 -15.02 -0.11 8.16 16 16 O -0.56 -9.89 15.58 5.12 0.08 -9.81 16 17 N -0.62 -7.37 3.01 -175.47 -0.53 -7.89 16 18 C 0.07 0.67 6.52 -3.32 -0.02 0.65 16 19 C 0.05 0.40 7.00 37.53 0.26 0.66 16 20 O -0.38 -3.90 10.74 -35.23 -0.38 -4.28 16 21 C 0.05 0.42 6.98 37.31 0.26 0.68 16 22 C 0.08 0.80 6.65 -3.53 -0.02 0.78 16 23 C -0.08 -1.48 6.36 -104.93 -0.67 -2.15 16 24 C -0.09 -1.35 10.09 -39.38 -0.40 -1.74 16 25 C -0.14 -2.05 10.03 -39.56 -0.40 -2.45 16 26 C -0.12 -1.76 10.01 -39.56 -0.40 -2.16 16 27 C -0.10 -1.84 9.97 -39.42 -0.39 -2.23 16 28 C 0.10 1.88 6.79 -83.96 -0.57 1.31 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.05 0.96 7.17 -51.93 -0.37 0.59 16 31 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 32 H 0.17 2.33 7.19 -52.49 -0.38 1.95 16 33 H 0.13 1.92 7.46 -52.48 -0.39 1.53 16 34 H 0.12 1.42 4.67 -52.49 -0.25 1.18 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.85 5.48 -51.93 -0.28 0.57 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.11 7.06 -51.93 -0.37 0.75 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 46 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -31.59 381.62 -9.98 -41.57 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.25 Total: 5.88 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -4.44 Total: -12.51 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.07 Total: -40.76 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.30 Total: -14.09 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.67 Total: 14.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.59 -9.98 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008023771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.522 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds