Wall clock time and date at job start Tue Mar 31 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53111 * 109.52417 * 2 1 4 4 C 1.53033 * 109.28085 * 182.37685 * 3 2 1 5 5 N 1.46848 * 109.52039 * 59.18121 * 4 3 2 6 6 C 1.46905 * 111.00112 * 174.15877 * 5 4 3 7 7 C 1.50704 * 109.46999 * 293.39651 * 6 5 4 8 8 O 1.21400 * 120.00098 * 354.56128 * 7 6 5 9 9 C 1.41729 * 119.99318 * 174.56579 * 7 6 5 10 10 C 1.37857 * 126.91677 * 0.03921 * 9 7 6 11 11 N 1.34672 * 109.62167 * 179.97438 * 10 9 7 12 12 C 1.46495 * 124.64463 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46750 * 264.97064 * 12 11 10 14 14 H 1.08000 * 120.00153 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99881 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00074 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47203 * 59.99885 * 17 15 13 19 19 H 1.48495 * 109.47528 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47072 * 300.00632 * 17 15 13 21 21 C 1.38020 * 110.70673 * 359.97438 * 11 10 9 22 22 C 1.39143 * 133.03713 * 179.97438 * 21 11 10 23 23 C 1.37776 * 119.94816 * 180.02562 * 22 21 11 24 24 C 1.38725 * 120.63437 * 0.02562 * 23 22 21 25 25 C 1.37793 * 120.27180 * 0.15976 * 24 23 22 26 26 C 1.39190 * 119.67251 * 359.63792 * 25 24 23 27 27 C 1.46845 * 111.20176 * 298.25933 * 5 4 3 28 28 C 1.53038 * 109.52326 * 61.74090 * 27 5 4 29 29 H 1.09000 * 109.47072 * 59.99739 * 1 2 3 30 30 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46935 * 299.99834 * 1 2 3 32 32 H 1.08997 * 109.52198 * 120.13049 * 2 1 3 33 33 H 1.09000 * 109.50489 * 62.43638 * 3 2 1 34 34 H 1.09004 * 109.53684 * 302.33961 * 3 2 1 35 35 H 1.08991 * 109.46521 * 299.16759 * 4 3 2 36 36 H 1.09005 * 109.45629 * 179.18765 * 4 3 2 37 37 H 1.08990 * 109.47267 * 173.39201 * 6 5 4 38 38 H 1.09001 * 109.46717 * 53.39356 * 6 5 4 39 39 H 1.07999 * 125.19103 * 359.97438 * 10 9 7 40 40 H 1.09001 * 109.47532 * 24.97280 * 12 11 10 41 41 H 1.08996 * 109.47505 * 144.97532 * 12 11 10 42 42 H 0.96996 * 120.00078 * 180.02562 * 16 15 13 43 43 H 1.08001 * 120.03029 * 0.06794 * 22 21 11 44 44 H 1.07999 * 119.68170 * 180.02562 * 23 22 21 45 45 H 1.07998 * 119.86230 * 179.97438 * 24 23 22 46 46 H 1.08005 * 120.16712 * 179.72498 * 25 24 23 47 47 H 1.08991 * 109.46395 * 181.75887 * 27 5 4 48 48 H 1.09006 * 109.45876 * 301.72921 * 27 5 4 49 49 H 1.08996 * 109.50441 * 180.88249 * 28 27 5 50 50 H 1.08998 * 109.50552 * 60.76283 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0418 1.4431 0.0000 4 6 3.5709 1.4370 -0.0599 5 7 4.0116 0.7425 -1.2764 6 6 5.4686 0.8373 -1.4384 7 6 5.8527 2.2711 -1.6992 8 8 4.9909 3.1137 -1.8439 9 6 7.2202 2.6355 -1.7756 10 6 8.3086 1.8012 -1.6350 11 7 9.4441 2.5121 -1.7722 12 6 10.7942 1.9505 -1.6833 13 6 11.3175 2.1203 -0.2803 14 1 10.7054 2.5984 0.4702 15 6 12.5773 1.6644 0.0455 16 7 13.3224 1.0818 -0.8682 17 14 13.2257 1.8743 1.7848 18 1 12.3310 1.1664 2.7354 19 1 14.5942 1.3051 1.8750 20 1 13.2673 3.3188 2.1266 21 6 9.1616 3.8421 -2.0091 22 6 9.9626 4.9608 -2.2164 23 6 9.3825 6.1916 -2.4327 24 6 8.0022 6.3301 -2.4458 25 6 7.1923 5.2347 -2.2387 26 6 7.7655 3.9847 -2.0233 27 6 3.5722 -0.6587 -1.2767 28 6 2.0430 -0.7151 -1.2531 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8943 -0.5157 0.8885 33 1 1.7153 1.9450 0.9108 34 1 1.6457 1.9703 -0.8679 35 1 3.9666 0.9223 0.8156 36 1 3.9378 2.4633 -0.0746 37 1 5.7817 0.2185 -2.2791 38 1 5.9586 0.4896 -0.5289 39 1 8.2583 0.7394 -1.4440 40 1 10.7639 0.8901 -1.9339 41 1 11.4506 2.4701 -2.3812 42 1 14.2085 0.7607 -0.6389 43 1 11.0383 4.8643 -2.2085 44 1 10.0083 7.0570 -2.5935 45 1 7.5607 7.3009 -2.6160 46 1 6.1179 5.3452 -2.2448 47 1 3.9400 -1.1545 -2.1750 48 1 3.9679 -1.1635 -0.3954 49 1 1.7174 -1.7552 -1.2375 50 1 1.6469 -0.2225 -2.1410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008318182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:16 Heat of formation + Delta-G solvation = 8.334737 kcal Electronic energy + Delta-G solvation = -29184.729383 eV Core-core repulsion = 25369.437466 eV Total energy + Delta-G solvation = -3815.291918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.00970 -39.53258 -37.92538 -36.65622 -34.50312 -33.63141 -31.93142 -30.88482 -29.89118 -29.69890 -28.40871 -27.39146 -25.59774 -23.60599 -23.23739 -22.60789 -22.03817 -21.23642 -20.37938 -19.72973 -18.46277 -16.95012 -16.57165 -16.21073 -15.67804 -15.37258 -15.09499 -15.07462 -14.64771 -14.53524 -14.38734 -14.15643 -13.97334 -13.62922 -13.36333 -13.34404 -13.18387 -12.81217 -12.47606 -12.45317 -12.11842 -12.07086 -11.86692 -11.79246 -11.48182 -11.44268 -11.25475 -11.18191 -10.95423 -10.91976 -10.79596 -10.60528 -10.41139 -10.33933 -10.25845 -9.82149 -9.09553 -9.02492 -8.81203 -8.24441 -7.75870 -7.15113 -6.42593 -4.53573 1.35455 1.97347 2.37074 3.11975 3.17118 3.19791 3.53261 3.69681 3.78362 4.15398 4.43468 4.56278 4.68181 4.69581 4.72258 4.90879 5.12595 5.16831 5.24464 5.25751 5.31752 5.36251 5.44843 5.47453 5.50668 5.53307 5.56262 5.57799 5.61923 5.71058 5.75115 5.87900 5.94364 5.95560 6.00975 6.07589 6.08325 6.14751 6.16186 6.33617 6.37853 6.50111 6.58325 6.76358 6.91740 7.03539 7.06143 7.12129 7.19897 7.33908 7.48113 7.66197 7.77520 7.82929 8.28332 8.53323 9.15365 10.63715 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.002870 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.064883 B = 9753.565462 C =11419.461837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.108 4.108 4 C 0.052 3.948 5 N -0.522 5.522 6 C 0.009 3.991 7 C 0.431 3.569 8 O -0.469 6.469 9 C -0.312 4.312 10 C 0.153 3.847 11 N -0.424 5.424 12 C 0.227 3.773 13 C -0.548 4.548 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.888 5.888 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.084 3.916 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.082 4.082 26 C -0.058 4.058 27 C 0.054 3.946 28 C -0.110 4.110 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.173 0.827 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.270 0.730 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.074 0.926 48 H 0.031 0.969 49 H 0.064 0.936 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 -1.756 -0.867 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.146 4.146 4 C -0.075 4.075 5 N -0.247 5.247 6 C -0.119 4.119 7 C 0.312 3.688 8 O -0.347 6.347 9 C -0.321 4.321 10 C 0.011 3.989 11 N -0.097 5.097 12 C 0.109 3.891 13 C -0.586 4.586 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.021 4.021 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.162 4.162 25 C -0.101 4.101 26 C -0.061 4.061 27 C -0.074 4.074 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.190 0.810 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.142 0.858 47 H 0.093 0.907 48 H 0.049 0.951 49 H 0.082 0.918 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.766 -1.293 -1.366 16.871 hybrid contribution 1.215 -0.627 1.691 2.175 sum -15.550 -1.921 0.325 15.672 Atomic orbital electron populations 1.21805 0.95267 1.01386 1.01776 1.21207 0.95482 0.96618 0.98123 1.21602 0.94839 0.96005 1.02128 1.22186 0.95721 1.00218 0.89389 1.61682 1.10971 1.13423 1.38630 1.22473 0.88810 0.98192 1.02472 1.19767 0.86940 0.89084 0.73034 1.90459 1.52318 1.52401 1.39546 1.19634 0.93761 0.93335 1.25357 1.22525 0.84734 0.97460 0.94186 1.44594 1.08648 1.05689 1.50780 1.19932 0.74466 0.95442 0.99249 1.21254 1.01356 1.41186 0.94761 0.91580 1.24934 0.96151 0.94178 0.98277 1.69898 1.10813 1.38010 1.33785 0.86411 0.78030 0.78937 0.83375 1.19845 1.20848 1.19796 1.18326 0.93753 0.85315 1.04688 1.20198 0.99381 0.90353 1.02136 1.20702 0.94789 0.96209 1.02448 1.20853 0.93507 0.98080 1.03801 1.20485 0.99731 0.90517 0.99346 1.18839 0.91429 0.92859 1.02976 1.22115 0.95922 0.88734 1.00614 1.21626 0.94628 0.99959 0.98525 0.92582 0.92946 0.92852 0.91758 0.91872 0.90901 0.95558 0.89371 0.87917 0.92025 0.81034 0.92957 0.93149 0.91996 0.85813 0.86282 0.86584 0.85808 0.90740 0.95061 0.91784 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.21 37.16 0.34 -0.78 16 2 C -0.10 -0.88 2.79 -90.49 -0.25 -1.13 16 3 C -0.11 -1.16 5.38 -26.66 -0.14 -1.31 16 4 C 0.05 0.67 5.12 -3.84 -0.02 0.65 16 5 N -0.52 -6.72 4.35 -236.12 -1.03 -7.75 16 6 C 0.01 0.12 4.73 -4.97 -0.02 0.09 16 7 C 0.43 7.12 6.50 -32.97 -0.21 6.91 16 8 O -0.47 -8.84 14.32 5.45 0.08 -8.76 16 9 C -0.31 -5.59 6.11 -104.88 -0.64 -6.23 16 10 C 0.15 2.66 10.70 -16.45 -0.18 2.48 16 11 N -0.42 -8.60 2.70 -115.29 -0.31 -8.91 16 12 C 0.23 5.15 5.68 -5.19 -0.03 5.12 16 13 C -0.55 -13.80 9.39 -34.44 -0.32 -14.12 16 14 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -23.50 13.29 55.43 0.74 -22.76 16 17 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.08 1.70 6.78 -83.95 -0.57 1.13 16 22 C -0.10 -1.89 9.96 -39.41 -0.39 -2.29 16 23 C -0.12 -1.97 10.01 -39.57 -0.40 -2.37 16 24 C -0.14 -2.28 10.03 -39.56 -0.40 -2.67 16 25 C -0.08 -1.47 9.80 -39.39 -0.39 -1.85 16 26 C -0.06 -1.12 6.24 -104.92 -0.65 -1.78 16 27 C 0.05 0.56 5.46 -3.83 -0.02 0.54 16 28 C -0.11 -1.01 5.38 -26.65 -0.14 -1.15 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 1.33 6.05 -51.93 -0.31 1.01 16 37 H 0.10 1.16 7.97 -51.93 -0.41 0.74 16 38 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.17 2.37 7.91 -52.49 -0.42 1.96 16 40 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.12 2.16 7.38 -52.48 -0.39 1.77 16 47 H 0.07 0.71 8.01 -51.93 -0.42 0.29 16 48 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -28.53 403.62 -12.25 -40.78 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.25 Total: 3.47 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -4.54 Total: -17.09 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.60 Total: -39.43 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -28.53 -12.25 -40.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008318182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.118 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds