Wall clock time and date at job start Tue Mar 31 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38229 * 120.04950 * 2 1 4 4 Cl 1.73603 * 119.97339 * 0.02562 * 3 2 1 5 5 C 1.38393 * 120.04932 * 180.02562 * 3 2 1 6 6 C 1.38292 * 120.14020 * 0.02562 * 5 3 2 7 7 C 1.38074 * 120.09219 * 0.25314 * 6 5 3 8 8 C 1.38896 * 120.03883 * 180.02562 * 2 1 3 9 9 N 1.39710 * 120.07385 * 359.96779 * 8 2 1 10 10 C 1.39038 * 120.00231 * 186.51683 * 9 8 2 11 11 N 1.29588 * 125.40137 * 4.18090 * 10 9 8 12 12 N 1.37770 * 115.62382 * 179.97438 * 11 10 9 13 13 C 1.29670 * 115.59907 * 359.97438 * 12 11 10 14 14 S 1.76199 * 125.41181 * 180.02562 * 13 12 11 15 15 C 1.81405 * 102.99996 * 359.97362 * 14 13 12 16 16 C 1.50699 * 109.46892 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00568 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00078 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47095 * 60.00391 * 20 18 16 22 22 H 1.48503 * 109.47003 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47064 * 300.00439 * 20 18 16 24 24 S 1.76035 * 125.40305 * 183.87926 * 10 9 8 25 25 H 1.08995 * 109.47159 * 89.99291 * 1 2 3 26 26 H 1.09001 * 109.47349 * 209.99988 * 1 2 3 27 27 H 1.09000 * 109.46731 * 329.99721 * 1 2 3 28 28 H 1.07999 * 119.92401 * 179.97438 * 5 3 2 29 29 H 1.08004 * 119.94902 * 179.97438 * 6 5 3 30 30 H 1.07997 * 120.02971 * 179.74696 * 7 6 5 31 31 H 0.97002 * 119.99823 * 6.51965 * 9 8 2 32 32 H 1.08996 * 109.47283 * 299.99887 * 15 14 13 33 33 H 1.09005 * 109.46584 * 60.00484 * 15 14 13 34 34 H 0.96999 * 120.00198 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1965 0.0000 4 17 1.3318 2.7003 0.0007 5 6 3.5832 1.1965 -0.0005 6 6 4.2775 0.0005 -0.0016 7 6 3.5920 -1.1980 -0.0074 8 6 2.2023 -1.2024 -0.0005 9 7 1.5062 -2.4137 -0.0004 10 6 2.1970 -3.6126 0.1357 11 7 3.4709 -3.7254 0.3452 12 7 3.9458 -5.0145 0.4485 13 6 3.0573 -5.9507 0.3235 14 16 3.3780 -7.6810 0.4115 15 6 5.1672 -7.7501 0.7029 16 6 5.6044 -9.1887 0.8044 17 1 4.8786 -9.9821 0.7032 18 6 6.9311 -9.4921 1.0253 19 7 7.8149 -8.5260 1.1479 20 14 7.4731 -11.2753 1.1503 21 1 7.1499 -11.9809 -0.1157 22 1 8.9378 -11.3319 1.3890 23 1 6.7627 -11.9308 2.2776 24 16 1.4788 -5.2179 0.0584 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 4.1219 2.1325 -0.0010 29 1 5.3576 0.0041 -0.0024 30 1 4.1353 -2.1313 -0.0124 31 1 0.5408 -2.4183 -0.0953 32 1 5.6889 -7.2689 -0.1243 33 1 5.4041 -7.2323 1.6324 34 1 8.7484 -8.7394 1.3030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008353714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:01 Heat of formation + Delta-G solvation = 86.399399 kcal Electronic energy + Delta-G solvation = -20743.343912 eV Core-core repulsion = 17341.584830 eV Total energy + Delta-G solvation = -3401.759082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.012 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48250 -38.98516 -36.98472 -35.86751 -33.29769 -33.15997 -30.79390 -29.70845 -28.68548 -27.24269 -25.11182 -23.24063 -22.89468 -22.18558 -20.65612 -19.42816 -17.94037 -17.22276 -16.63650 -16.16596 -15.72854 -15.47373 -15.12554 -14.78227 -14.52524 -14.42983 -13.74051 -13.40422 -13.10376 -13.02272 -12.75320 -12.69397 -12.48792 -12.33413 -11.89935 -11.77582 -11.40981 -11.05148 -11.02541 -10.94205 -10.72237 -10.53267 -10.06049 -9.77129 -9.68582 -9.35211 -9.31249 -8.86178 -8.72195 -8.06274 -7.11065 -6.29271 -4.38602 0.45279 0.65046 0.98674 1.15416 1.31922 1.75709 1.90053 2.42599 2.74626 3.21855 3.23983 3.26242 3.34306 3.47387 4.25561 4.39361 4.44228 4.59486 4.77528 5.07305 5.09603 5.16429 5.22241 5.26898 5.34219 5.54179 5.74199 5.95709 6.01212 6.21287 6.61617 6.69767 6.89420 6.94804 7.05191 7.57476 7.80708 8.10128 8.61935 9.25839 10.80924 Molecular weight = 341.01amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.002199 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.296046 B =12731.635735 C =13786.708355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.126 4.126 3 C -0.009 4.009 4 Cl -0.070 7.070 5 C -0.139 4.139 6 C -0.078 4.078 7 C -0.156 4.156 8 C 0.185 3.815 9 N -0.618 5.618 10 C 0.282 3.718 11 N -0.332 5.332 12 N -0.268 5.268 13 C 0.050 3.950 14 S -0.024 6.024 15 C 0.075 3.925 16 C -0.529 4.529 17 H 0.069 0.931 18 C 0.072 3.928 19 N -0.881 5.881 20 Si 0.910 3.090 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.272 1.272 24 S 0.062 5.938 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.184 0.816 31 H 0.424 0.576 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.191 17.734 -3.140 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.131 4.131 3 C -0.037 4.037 4 Cl -0.042 7.042 5 C -0.159 4.159 6 C -0.097 4.097 7 C -0.179 4.179 8 C 0.085 3.915 9 N -0.249 5.249 10 C -0.101 4.101 11 N -0.165 5.165 12 N -0.097 5.097 13 C -0.348 4.348 14 S 0.206 5.794 15 C -0.074 4.074 16 C -0.569 4.569 17 H 0.087 0.913 18 C -0.134 4.134 19 N -0.517 5.517 20 Si 0.736 3.264 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 S 0.296 5.704 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.200 0.800 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.300 17.124 -3.118 23.174 hybrid contribution 0.677 0.425 0.165 0.816 sum -14.622 17.548 -2.953 23.032 Atomic orbital electron populations 1.20764 0.90340 1.03374 1.02869 1.19101 0.96325 0.89955 1.07727 1.20362 0.92108 0.85861 1.05328 1.98350 1.77075 1.31803 1.96922 1.21006 0.91712 0.99376 1.03846 1.21036 1.00427 0.90824 0.97431 1.22440 0.92456 1.02216 1.00756 1.17429 0.91678 0.83221 0.99136 1.41259 1.08799 0.99401 1.75474 1.25855 0.93120 0.90747 1.00330 1.74887 1.06836 1.12185 1.22597 1.75693 1.24217 0.91466 1.18314 1.30974 0.93052 1.07100 1.03713 1.85708 1.20756 0.87089 1.85880 1.21523 0.81869 1.01960 1.02021 1.20515 0.93813 0.89491 1.53119 0.91278 1.24945 0.95808 0.98373 0.94248 1.69959 1.02897 1.32183 1.46710 0.86359 0.77635 0.83353 0.79009 1.19756 1.20891 1.19762 1.85404 1.12126 0.95433 1.77483 0.90613 0.91826 0.90212 0.85040 0.84582 0.79964 0.73579 0.92730 0.92742 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.13 36.01 0.33 -0.52 16 2 C -0.13 -1.28 5.90 -104.38 -0.62 -1.90 16 3 C -0.01 -0.10 6.31 -39.53 -0.25 -0.35 16 4 Cl -0.07 -0.63 27.29 -51.86 -1.42 -2.04 16 5 C -0.14 -1.40 9.83 -39.50 -0.39 -1.79 16 6 C -0.08 -0.87 10.04 -39.62 -0.40 -1.27 16 7 C -0.16 -2.08 9.12 -39.37 -0.36 -2.44 16 8 C 0.19 2.21 6.60 -83.75 -0.55 1.66 16 9 N -0.62 -6.92 5.44 -10.35 -0.06 -6.97 16 10 C 0.28 4.08 8.29 -87.34 -0.72 3.36 16 11 N -0.33 -5.93 8.28 30.86 0.26 -5.67 16 12 N -0.27 -5.51 11.62 31.12 0.36 -5.14 16 13 C 0.05 0.93 7.82 51.85 0.41 1.34 16 14 S -0.02 -0.49 22.08 -107.50 -2.37 -2.86 16 15 C 0.07 1.87 5.30 36.01 0.19 2.06 16 16 C -0.53 -14.04 9.13 -34.44 -0.31 -14.35 16 17 H 0.07 1.77 7.71 -52.49 -0.40 1.36 16 18 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 19 N -0.88 -24.99 13.29 55.43 0.74 -24.25 16 20 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 S 0.06 0.86 23.39 -107.50 -2.51 -1.66 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.38 6.65 -51.93 -0.35 0.04 16 27 H 0.08 0.56 6.90 -51.93 -0.36 0.20 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 30 H 0.18 2.88 4.60 -62.99 -0.29 2.59 16 31 H 0.42 3.36 6.92 -40.82 -0.28 3.08 16 32 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.05 1.46 8.14 -51.92 -0.42 1.04 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -29.18 336.80 -10.66 -39.83 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -2.93 Total: 0.68 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -2.77 Total: -12.35 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.30 Total: -42.04 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -4.89 Total: -4.52 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.42 Total: -2.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.18 -10.66 -39.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008353714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.233 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds