Wall clock time and date at job start Tue Mar 31 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35993 * 116.99703 * 2 1 4 4 C 1.38564 * 120.07631 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.00089 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.14599 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.14267 * 359.68236 * 6 5 4 8 8 C 1.38558 * 120.00284 * 0.59055 * 7 6 5 9 9 O 1.35998 * 120.07517 * 179.70250 * 8 7 6 10 10 C 1.42895 * 116.99827 * 5.27970 * 9 8 7 11 11 H 1.09003 * 109.47194 * 35.03142 * 10 9 8 12 12 C 1.53001 * 109.47507 * 275.03054 * 10 9 8 13 13 C 1.50697 * 109.47247 * 155.03053 * 10 9 8 14 14 O 1.21288 * 120.00154 * 5.00007 * 13 10 9 15 15 N 1.34773 * 120.00349 * 184.99988 * 13 10 9 16 16 C 1.39241 * 120.00094 * 174.40424 * 15 13 10 17 17 C 1.39483 * 119.83397 * 325.30187 * 16 15 13 18 18 C 1.36368 * 120.16727 * 180.23470 * 17 16 15 19 19 C 1.40875 * 119.83147 * 359.49745 * 18 17 16 20 20 C 1.41148 * 120.16818 * 180.25746 * 19 18 17 21 21 H 1.08000 * 120.00186 * 34.61793 * 20 19 18 22 22 C 1.39900 * 120.00020 * 214.62747 * 20 19 18 23 23 N 1.30882 * 120.00108 * 5.44759 * 22 20 19 24 24 Si 1.86800 * 120.00357 * 185.45763 * 22 20 19 25 25 H 1.48498 * 109.47649 * 89.99051 * 24 22 20 26 26 H 1.48496 * 109.47531 * 209.99756 * 24 22 20 27 27 H 1.48508 * 109.46836 * 329.99405 * 24 22 20 28 28 C 1.40872 * 119.66952 * 0.49785 * 19 18 17 29 29 C 1.36380 * 119.82685 * 359.75668 * 28 19 18 30 30 H 1.09005 * 109.46989 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46840 * 299.99962 * 1 2 3 32 32 H 1.08998 * 109.47119 * 60.00164 * 1 2 3 33 33 H 1.08002 * 119.99820 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.92709 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.92332 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.99366 * 180.32398 * 7 6 5 37 37 H 1.09003 * 109.46965 * 300.00229 * 12 10 9 38 38 H 1.09005 * 109.47111 * 59.99704 * 12 10 9 39 39 H 1.08992 * 109.47510 * 180.02562 * 12 10 9 40 40 H 0.97003 * 120.00118 * 354.41263 * 15 13 10 41 41 H 1.07992 * 119.91597 * 359.95401 * 17 16 15 42 42 H 1.08004 * 120.08556 * 179.74966 * 18 17 16 43 43 H 0.96997 * 119.99637 * 180.02562 * 23 22 20 44 44 H 1.08001 * 120.08638 * 179.73236 * 28 19 18 45 45 H 1.07998 * 119.91362 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 3.3029 3.6799 0.0005 7 6 4.0602 2.5233 0.0061 8 6 3.4359 1.2864 -0.0002 9 8 4.1795 0.1477 -0.0008 10 6 5.5953 0.2974 0.1223 11 1 5.8159 1.1396 0.7781 12 6 6.2031 0.5532 -1.2583 13 6 6.1847 -0.9611 0.7053 14 8 5.4779 -1.9267 0.9031 15 7 7.4972 -1.0136 1.0069 16 6 8.0190 -2.1318 1.6521 17 6 7.2472 -2.8132 2.5930 18 6 7.7532 -3.9062 3.2324 19 6 9.0552 -4.3530 2.9328 20 6 9.5841 -5.4867 3.5864 21 1 8.9360 -6.3095 3.8498 22 6 10.9478 -5.5446 3.8932 23 7 11.7131 -4.5062 3.6717 24 14 11.6767 -7.1039 4.6189 25 1 12.1397 -7.9912 3.5218 26 1 12.8264 -6.7538 5.4910 27 1 10.6431 -7.8067 5.4210 28 6 9.8287 -3.6596 1.9813 29 6 9.3109 -2.5650 1.3538 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2146 2.3196 0.0005 34 1 1.3341 4.5115 0.0011 35 1 3.7907 4.6434 0.0005 36 1 5.1385 2.5841 0.0110 37 1 5.9824 -0.2891 -1.9141 38 1 5.7768 1.4634 -1.6800 39 1 7.2830 0.6669 -1.1645 40 1 8.0783 -0.2725 0.7746 41 1 6.2479 -2.4717 2.8190 42 1 7.1559 -4.4305 3.9637 43 1 12.6586 -4.5465 3.8841 44 1 10.8293 -3.9936 1.7496 45 1 9.9028 -2.0321 0.6244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008492368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:05 Heat of formation + Delta-G solvation = -53.526370 kcal Electronic energy + Delta-G solvation = -28338.953467 eV Core-core repulsion = 24287.427294 eV Total energy + Delta-G solvation = -4051.526173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.90969 -39.82212 -38.54168 -37.31685 -36.79701 -34.46678 -33.14687 -32.00580 -30.58087 -29.86391 -29.58298 -28.78380 -27.40517 -25.49268 -24.35280 -22.66945 -22.44917 -21.45954 -20.73968 -19.57539 -18.93009 -17.64048 -17.39876 -17.17497 -16.28870 -16.13471 -16.04571 -15.47967 -15.18965 -15.02571 -14.86491 -14.55051 -14.26916 -13.91153 -13.62058 -13.27701 -13.04660 -12.76700 -12.66510 -12.54917 -12.32242 -12.14324 -12.05623 -11.76442 -11.50941 -11.44081 -11.32243 -11.27437 -11.18038 -11.07952 -10.92836 -10.55331 -10.03680 -9.78292 -9.34734 -9.19820 -8.97364 -8.78058 -7.99592 -7.57691 -6.91279 -6.67884 -4.33049 1.03133 1.21855 2.47186 2.72466 2.98429 3.06241 3.10055 3.10648 3.13738 3.31927 3.50245 3.80285 3.97522 4.52512 4.54632 4.66479 4.67501 4.76156 4.81439 4.90041 4.92317 4.95406 5.11878 5.17438 5.30002 5.33615 5.42673 5.46073 5.65084 5.88414 5.94476 6.01588 6.16055 6.23646 6.37358 6.42433 6.70297 6.83715 6.93808 7.04359 7.17322 7.26470 7.42017 7.58951 7.67987 7.83973 8.04211 8.20378 8.27662 8.58754 8.69455 8.90446 8.97458 10.27879 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002052 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.901695 B =13640.204739 C =14348.622714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.101 3.899 4 C -0.175 4.175 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.178 4.178 8 C 0.106 3.894 9 O -0.271 6.271 10 C 0.067 3.933 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.503 3.497 14 O -0.504 6.504 15 N -0.647 5.647 16 C 0.005 3.995 17 C -0.081 4.081 18 C -0.204 4.204 19 C 0.107 3.893 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.072 3.928 23 N -0.810 5.810 24 Si 0.913 3.087 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.139 4.139 29 C -0.116 4.116 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.395 0.605 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.278 0.722 44 H 0.122 0.878 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.773 17.151 -8.561 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.214 6.214 3 C 0.055 3.945 4 C -0.193 4.193 5 C -0.140 4.140 6 C -0.135 4.135 7 C -0.197 4.197 8 C 0.060 3.940 9 O -0.183 6.183 10 C 0.007 3.993 11 H 0.113 0.887 12 C -0.233 4.233 13 C 0.287 3.713 14 O -0.378 6.378 15 N -0.292 5.292 16 C -0.087 4.087 17 C -0.101 4.101 18 C -0.224 4.224 19 C 0.104 3.896 20 C -0.494 4.494 21 H 0.095 0.905 22 C -0.144 4.144 23 N -0.437 5.437 24 Si 0.738 3.262 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.159 4.159 29 C -0.136 4.136 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.229 0.771 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.055 16.125 -8.390 22.978 hybrid contribution 0.632 0.168 0.273 0.708 sum -13.424 16.293 -8.118 22.617 Atomic orbital electron populations 1.23074 0.78713 1.04147 1.00917 1.86278 1.20857 1.25594 1.88676 1.18308 0.89165 0.85438 1.01569 1.21069 0.99919 0.91543 1.06809 1.20834 0.94599 0.96906 1.01622 1.20851 0.93731 0.97782 1.01165 1.21164 1.00657 0.91123 1.06747 1.18363 0.88453 0.86264 1.00964 1.86348 1.16967 1.27557 1.87464 1.22238 0.80578 0.97908 0.98614 0.88717 1.22335 1.01557 1.03771 0.95634 1.19939 0.83056 0.88653 0.79649 1.90756 1.59556 1.36125 1.51321 1.42855 1.07900 1.19988 1.58475 1.17161 0.95392 0.94123 1.02019 1.20263 0.98063 0.96789 0.95024 1.20794 0.98433 0.99240 1.03963 1.17697 0.90529 0.92063 0.89306 1.19505 0.93177 1.02950 1.33731 0.90486 1.25865 0.97028 0.97139 0.94339 1.69786 1.06736 1.28866 1.38329 0.86233 0.78888 0.81709 0.79370 1.19451 1.20369 1.18723 1.20942 1.00886 0.96694 0.97385 1.20256 0.94082 0.98446 1.00861 0.88099 0.92791 0.92854 0.84848 0.85683 0.85561 0.84498 0.90501 0.90854 0.90201 0.77075 0.88095 0.88471 0.91090 0.86043 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.16 10.28 -34.22 -0.35 -4.51 16 3 C 0.10 1.30 6.70 -39.12 -0.26 1.04 16 4 C -0.17 -1.69 9.04 -39.46 -0.36 -2.04 16 5 C -0.12 -1.02 10.04 -39.57 -0.40 -1.42 16 6 C -0.12 -1.01 10.04 -39.57 -0.40 -1.41 16 7 C -0.18 -1.84 8.25 -39.46 -0.33 -2.16 16 8 C 0.11 1.43 6.61 -39.12 -0.26 1.17 16 9 O -0.27 -4.36 9.12 -47.34 -0.43 -4.79 16 10 C 0.07 0.90 2.64 -27.88 -0.07 0.82 16 11 H 0.10 1.01 6.30 -51.93 -0.33 0.69 16 12 C -0.18 -1.79 9.11 37.16 0.34 -1.45 16 13 C 0.50 9.09 6.89 -10.99 -0.08 9.01 16 14 O -0.50 -11.66 14.27 -14.31 -0.20 -11.86 16 15 N -0.65 -11.24 5.27 -9.74 -0.05 -11.30 16 16 C 0.00 0.11 6.26 -83.57 -0.52 -0.42 16 17 C -0.08 -1.98 8.57 -39.79 -0.34 -2.32 16 18 C -0.20 -5.24 9.74 -39.26 -0.38 -5.62 16 19 C 0.11 2.87 5.50 -106.80 -0.59 2.28 16 20 C -0.46 -12.40 9.03 -37.86 -0.34 -12.74 16 21 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 22 C 0.07 1.81 5.31 -17.33 -0.09 1.72 16 23 N -0.81 -20.90 10.96 55.55 0.61 -20.29 16 24 Si 0.91 18.95 29.56 -169.99 -5.03 13.93 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 28 C -0.14 -3.56 8.57 -39.26 -0.34 -3.89 16 29 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 32 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 33 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 34 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.14 1.13 5.43 -52.48 -0.29 0.84 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.62 6.93 -51.93 -0.36 0.26 16 39 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 40 H 0.40 5.19 8.41 -40.82 -0.34 4.84 16 41 H 0.10 2.45 6.50 -52.49 -0.34 2.11 16 42 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 43 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 44 H 0.12 3.18 6.46 -52.49 -0.34 2.84 16 45 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -33.67 376.88 -9.20 -42.87 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.61 Total: 9.51 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.81 Total: -19.23 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.56 Total: -31.59 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.99 Total: -21.17 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.67 -9.20 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008492368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.656 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds