Wall clock time and date at job start Tue Mar 31 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34754 * 125.90598 * 2 1 4 4 C 1.41047 * 107.51359 * 180.02562 * 3 2 1 5 5 C 1.34753 * 107.51049 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.90566 * 179.97438 * 5 4 3 7 7 N 1.36766 * 125.90761 * 179.68685 * 2 1 3 8 8 C 1.38874 * 125.70160 * 0.02562 * 7 2 1 9 9 N 1.28887 * 124.84601 * 0.02637 * 8 7 2 10 10 C 1.33845 * 118.15401 * 180.02562 * 9 8 7 11 11 C 1.41485 * 128.55591 * 180.02562 * 10 9 8 12 12 C 1.35659 * 120.77696 * 179.97438 * 11 10 9 13 13 C 1.40248 * 120.60074 * 0.02562 * 12 11 10 14 14 C 1.47400 * 120.17932 * 180.02562 * 13 12 11 15 15 O 1.21642 * 120.00018 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99783 * 0.02562 * 14 13 12 17 17 C 1.36894 * 119.99556 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.39024 * 119.99583 * 180.02562 * 17 16 14 20 20 N 1.31380 * 120.00377 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47371 * 89.99679 * 21 19 17 23 23 H 1.48501 * 109.46831 * 209.99750 * 21 19 17 24 24 H 1.48498 * 109.47081 * 329.99132 * 21 19 17 25 25 C 1.39344 * 119.64203 * 0.02562 * 13 12 11 26 26 C 1.38814 * 119.93126 * 359.97438 * 25 13 12 27 27 S 1.75833 * 124.85352 * 179.71804 * 8 7 2 28 28 H 1.09002 * 109.47152 * 90.02751 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02851 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02832 * 1 2 3 31 31 H 1.07998 * 126.24680 * 359.97237 * 3 2 1 32 32 H 1.07997 * 126.24519 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47543 * 90.02275 * 6 5 4 34 34 H 1.09004 * 109.47482 * 210.02261 * 6 5 4 35 35 H 1.09005 * 109.47490 * 330.02837 * 6 5 4 36 36 H 1.08006 * 119.60695 * 359.95454 * 11 10 9 37 37 H 1.07997 * 119.70229 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00408 * 359.97438 * 16 14 13 39 39 H 0.97001 * 120.00479 * 180.02562 * 20 19 17 40 40 H 1.08006 * 120.03406 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.0915 0.0000 4 6 3.6357 0.6464 -0.0006 5 6 3.6150 -0.7009 -0.0004 6 6 4.8219 -1.6034 -0.0014 7 7 2.3091 -1.1077 0.0061 8 6 1.8710 -2.4255 0.0128 9 7 0.6349 -2.7906 0.0137 10 6 0.3635 -4.1013 0.0210 11 6 -0.8987 -4.7404 0.0231 12 6 -0.9915 -6.0938 0.0304 13 6 0.1641 -6.8886 0.0366 14 6 0.0525 -8.3583 0.0439 15 8 1.0569 -9.0445 0.0498 16 7 -1.1624 -8.9419 0.0441 17 6 -1.2660 -10.3069 0.0515 18 1 -0.3743 -10.9161 0.0567 19 6 -2.5191 -10.9089 0.0512 20 7 -3.6040 -10.1678 0.0443 21 14 -2.6605 -12.7715 0.0605 22 1 -2.7018 -13.2579 1.4629 23 1 -3.9051 -13.1769 -0.6409 24 1 -1.4872 -13.3605 -0.6335 25 6 1.4182 -6.2813 0.0358 26 6 1.5173 -4.8967 0.0284 27 16 2.9232 -3.8343 0.0134 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9663 2.1195 -0.0004 32 1 4.5164 1.2715 -0.0004 33 1 5.1136 -1.8212 1.0260 34 1 4.5796 -2.5337 -0.5152 35 1 5.6456 -1.1081 -0.5156 36 1 -1.7990 -4.1438 0.0191 37 1 -1.9639 -6.5636 0.0314 38 1 -1.9633 -8.3948 0.0398 39 1 -4.4783 -10.5878 0.0445 40 1 2.3123 -6.8873 0.0410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008991112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:29 Heat of formation + Delta-G solvation = 74.150499 kcal Electronic energy + Delta-G solvation = -25434.541535 eV Core-core repulsion = 21727.764374 eV Total energy + Delta-G solvation = -3706.777161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95719 -40.23105 -38.46548 -36.30759 -34.27539 -33.02845 -32.67018 -31.62849 -30.89939 -29.49031 -29.08967 -25.60532 -24.71890 -24.49873 -22.90580 -22.45790 -20.83893 -20.02087 -19.08498 -18.49954 -17.88819 -16.91932 -16.59060 -16.15498 -15.71251 -15.00068 -14.82012 -14.39637 -14.20252 -14.09455 -13.86197 -13.62174 -13.55170 -13.50165 -13.41944 -13.25753 -12.72435 -12.56134 -12.53145 -12.32376 -12.09982 -11.79013 -11.64020 -11.53730 -11.22870 -10.69940 -10.54515 -10.43776 -10.18239 -9.82368 -9.80696 -9.53409 -8.68157 -8.28359 -8.24385 -8.15387 -7.97168 -6.75296 -4.02900 0.03143 0.68743 1.30883 1.48314 1.62549 2.28392 2.47476 2.67858 3.05081 3.12527 3.18055 3.49674 3.94312 3.95205 4.27841 4.53955 4.62283 4.71535 4.84680 4.91393 5.09341 5.11530 5.18166 5.22853 5.32617 5.40266 5.49732 5.50380 5.58090 5.59152 5.74119 5.88183 5.94283 5.96017 6.08015 6.18833 6.42003 6.57991 6.63259 6.71044 6.83008 6.99988 7.25084 7.51273 7.77542 8.30963 8.87433 9.21523 9.79203 10.40550 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.002303 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.109686 B =12157.087609 C =13083.735480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.048 3.952 3 C -0.192 4.192 4 C -0.168 4.168 5 C 0.007 3.993 6 C -0.092 4.092 7 N -0.367 5.367 8 C 0.301 3.699 9 N -0.475 5.475 10 C 0.090 3.910 11 C -0.066 4.066 12 C -0.089 4.089 13 C -0.068 4.068 14 C 0.458 3.542 15 O -0.597 6.597 16 N -0.533 5.533 17 C -0.288 4.288 18 H 0.112 0.888 19 C 0.024 3.976 20 N -0.880 5.880 21 Si 0.938 3.062 22 H -0.274 1.274 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.034 4.034 26 C -0.186 4.186 27 S 0.105 5.895 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.395 0.605 39 H 0.279 0.721 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.750 19.797 -0.060 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.216 4.216 4 C -0.193 4.193 5 C -0.099 4.099 6 C -0.150 4.150 7 N -0.047 5.047 8 C -0.070 4.070 9 N -0.192 5.192 10 C -0.030 4.030 11 C -0.087 4.087 12 C -0.110 4.110 13 C -0.075 4.075 14 C 0.247 3.753 15 O -0.484 6.484 16 N -0.166 5.166 17 C -0.418 4.418 18 H 0.130 0.870 19 C -0.181 4.181 20 N -0.518 5.518 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.059 4.059 26 C -0.303 4.303 27 S 0.357 5.643 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.230 0.770 39 H 0.089 0.911 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.741 19.215 -0.069 21.543 hybrid contribution -1.541 -0.797 -0.011 1.735 sum 8.200 18.418 -0.081 20.161 Atomic orbital electron populations 1.20502 0.87248 1.04003 1.03082 1.20728 0.94255 0.84083 1.07078 1.20805 0.92503 0.97651 1.10675 1.20757 0.97760 0.92199 1.08598 1.20495 0.82865 0.95109 1.11474 1.20532 0.93566 0.97329 1.03554 1.40759 1.06629 1.00543 1.56737 1.23577 0.91345 0.88961 1.03148 1.65655 1.16964 1.17485 1.19144 1.18605 0.94489 0.84772 1.05149 1.20241 0.94330 0.93985 1.00121 1.20995 0.99034 0.92874 0.98109 1.20324 0.92622 0.95169 0.99426 1.17450 0.84602 0.85862 0.87410 1.90631 1.35829 1.63901 1.58057 1.41971 1.06558 1.07915 1.60181 1.19951 0.94443 0.81532 1.45837 0.87048 1.25471 0.94585 1.01588 0.96453 1.69585 0.98502 1.36999 1.46759 0.85718 0.78222 0.80896 0.78784 1.19945 1.20536 1.18981 1.20296 0.98521 0.89737 0.97314 1.23793 0.96078 0.99314 1.11131 1.85038 1.06177 0.95046 1.78016 0.91027 0.90627 0.89292 0.83716 0.83572 0.90058 0.91381 0.88842 0.84603 0.84077 0.76992 0.91057 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.74 36.01 0.35 -0.61 16 2 C 0.05 0.58 6.86 -81.62 -0.56 0.02 16 3 C -0.19 -1.99 10.76 -39.75 -0.43 -2.42 16 4 C -0.17 -1.66 10.76 -39.75 -0.43 -2.09 16 5 C 0.01 0.08 6.86 -81.62 -0.56 -0.48 16 6 C -0.09 -0.76 9.35 36.01 0.34 -0.42 16 7 N -0.37 -4.82 2.95 -55.05 -0.16 -4.98 16 8 C 0.30 4.34 8.05 -88.07 -0.71 3.63 16 9 N -0.48 -7.34 8.03 -10.96 -0.09 -7.43 16 10 C 0.09 1.46 6.93 -85.04 -0.59 0.87 16 11 C -0.07 -0.99 10.03 -39.27 -0.39 -1.38 16 12 C -0.09 -1.46 9.44 -39.75 -0.38 -1.84 16 13 C -0.07 -1.31 5.87 -105.00 -0.62 -1.93 16 14 C 0.46 10.87 7.71 -12.53 -0.10 10.77 16 15 O -0.60 -16.09 15.91 5.24 0.08 -16.01 16 16 N -0.53 -13.00 5.23 -11.96 -0.06 -13.06 16 17 C -0.29 -7.57 9.68 -15.00 -0.15 -7.72 16 18 H 0.11 3.06 7.15 -52.49 -0.38 2.68 16 19 C 0.02 0.59 5.50 -17.45 -0.10 0.50 16 20 N -0.88 -22.16 13.05 55.50 0.72 -21.44 16 21 Si 0.94 19.58 29.55 -169.99 -5.02 14.55 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.03 -0.61 9.62 -38.96 -0.37 -0.98 16 26 C -0.19 -3.01 6.51 -38.65 -0.25 -3.26 16 27 S 0.10 1.39 19.42 -107.50 -2.09 -0.70 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.09 6.28 -51.93 -0.33 0.77 16 31 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.62 5.01 -34.24 -0.17 0.45 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.14 2.18 6.38 -52.49 -0.34 1.84 16 38 H 0.39 8.98 5.91 -40.82 -0.24 8.74 16 39 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 40 H 0.14 2.53 7.64 -52.48 -0.40 2.13 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -30.32 352.56 -10.19 -40.51 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -3.94 Total: 10.60 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -4.94 Total: -7.36 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.41 Total: -46.91 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.09 Total: -0.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.32 -10.19 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008991112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.660 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds