Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47005 * 224.66525 * 3 2 1 5 5 N 1.46504 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99880 * 270.00471 * 5 4 3 7 7 C 1.50703 * 109.47077 * 269.99336 * 6 5 4 8 8 H 1.08005 * 119.99703 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00292 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46723 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46911 * 119.99623 * 11 9 7 14 14 H 1.48497 * 109.46876 * 240.00029 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21274 * 120.00135 * 180.27973 * 15 5 4 17 17 C 1.50706 * 119.99766 * 0.02562 * 15 5 4 18 18 S 1.81003 * 109.46851 * 179.97438 * 17 15 5 19 19 C 1.76196 * 99.99843 * 180.02562 * 18 17 15 20 20 S 1.71201 * 120.00218 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99601 * 180.02562 * 19 18 17 22 22 C 1.47015 * 125.65142 * 359.68731 * 21 19 18 23 23 C 1.54320 * 107.27792 * 180.97204 * 22 21 19 24 24 C 1.55156 * 102.86138 * 22.52714 * 23 22 21 25 25 C 1.47428 * 125.64281 * 180.02562 * 21 19 18 26 26 H 1.08994 * 109.46905 * 104.66793 * 3 2 1 27 27 H 1.08996 * 109.47181 * 344.66715 * 3 2 1 28 28 H 1.09001 * 109.46783 * 60.00107 * 4 3 2 29 29 H 1.08996 * 109.47306 * 300.00114 * 4 3 2 30 30 H 1.08997 * 109.47682 * 29.99532 * 6 5 4 31 31 H 1.09004 * 109.47271 * 149.99629 * 6 5 4 32 32 H 0.96999 * 119.99754 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47161 * 299.99737 * 17 15 5 34 34 H 1.09001 * 109.46740 * 59.99879 * 17 15 5 35 35 H 1.09000 * 109.88602 * 300.51860 * 22 21 19 36 36 H 1.09007 * 109.88357 * 61.68279 * 22 21 19 37 37 H 1.09005 * 110.92322 * 264.11600 * 23 22 21 38 38 H 1.08988 * 110.59058 * 140.78925 * 23 22 21 39 39 H 1.09005 * 111.00472 * 206.23590 * 24 23 22 40 40 H 1.08991 * 111.00373 * 82.37618 * 24 23 22 41 41 H 1.09002 * 110.36693 * 274.66454 * 25 21 19 42 42 H 1.09000 * 110.36786 * 36.88582 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0268 1.0140 5 7 4.5826 1.0271 1.0145 6 6 5.3149 0.1355 1.9172 7 6 5.5656 0.8404 3.2254 8 1 5.2142 1.8513 3.3700 9 6 6.2436 0.1948 4.2375 10 7 6.6711 -1.0364 4.0615 11 14 6.5538 1.0683 5.8593 12 1 5.9757 2.4350 5.8038 13 1 5.9164 0.3052 6.9623 14 1 8.0161 1.1593 6.1007 15 6 5.2565 1.8476 0.1844 16 8 6.4693 1.8442 0.1812 17 6 4.5031 2.7651 -0.7438 18 16 5.6794 3.7327 -1.7217 19 6 4.5594 4.6894 -2.6886 20 16 2.8707 4.4918 -2.4880 21 7 5.0322 5.5767 -3.5861 22 6 6.4515 5.8506 -3.8544 23 6 6.5097 6.9507 -4.9351 24 6 5.1263 7.6403 -4.8009 25 6 4.2116 6.4385 -4.4565 26 1 2.9712 0.2610 -0.9941 27 1 2.9718 -0.9902 0.2717 28 1 2.7543 0.7664 2.0082 29 1 2.7538 2.0177 0.7423 30 1 4.7260 -0.7641 2.0962 31 1 6.2675 -0.1383 1.4636 32 1 7.1478 -1.4908 4.7737 33 1 3.8764 2.1728 -1.4106 34 1 3.8764 3.4387 -0.1592 35 1 6.9409 6.1965 -2.9440 36 1 6.9405 4.9478 -4.2206 37 1 6.6290 6.5157 -5.9274 38 1 7.3139 7.6549 -4.7224 39 1 4.8269 8.1021 -5.7418 40 1 5.1310 8.3714 -3.9926 41 1 3.9307 5.9037 -5.3638 42 1 3.3219 6.7768 -3.9253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009256732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = 16.083694 kcal Electronic energy + Delta-G solvation = -24285.870698 eV Core-core repulsion = 20712.019523 eV Total energy + Delta-G solvation = -3573.851175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84421 -39.34994 -36.80718 -35.32228 -33.68179 -32.97303 -30.87384 -30.35245 -29.84949 -27.14531 -26.48114 -24.04465 -22.96011 -22.15419 -21.91237 -18.99579 -17.96780 -17.76858 -17.50175 -16.82915 -16.70968 -16.48065 -15.53443 -15.22271 -14.81969 -14.68912 -14.25624 -14.20042 -14.06288 -13.90178 -13.62153 -13.36869 -13.02794 -12.74032 -12.39434 -12.34067 -12.13426 -12.09923 -11.92664 -11.84061 -11.66898 -11.44750 -11.39959 -11.30948 -10.98104 -10.85364 -10.67797 -10.41105 -10.23636 -9.74541 -9.35816 -8.59904 -8.50891 -8.01033 -7.94153 -7.66745 -6.12555 -4.17281 0.44361 0.71615 1.58086 1.99524 2.49927 2.80133 2.92525 3.08732 3.26840 3.35064 3.38767 3.60283 3.85865 3.92886 4.18210 4.25731 4.38963 4.59367 4.68226 4.81776 4.94991 5.05215 5.06514 5.12338 5.20714 5.20980 5.23559 5.23646 5.30885 5.47292 5.50726 5.55341 5.69174 5.84696 6.10362 6.30496 6.80951 7.25523 7.33855 7.68020 7.83072 8.08195 8.11944 8.64248 8.88434 9.48504 10.95684 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.003109 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.298076 B = 9004.446187 C =10792.815075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.217 3.783 3 C -0.049 4.049 4 C 0.112 3.888 5 N -0.585 5.585 6 C 0.245 3.755 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.525 3.475 16 O -0.523 6.523 17 C -0.143 4.143 18 S 0.057 5.943 19 C 0.297 3.703 20 S -0.595 6.595 21 N -0.517 5.517 22 C 0.071 3.929 23 C -0.129 4.129 24 C -0.135 4.135 25 C 0.094 3.906 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 13.814 -18.877 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.101 4.101 3 C -0.090 4.090 4 C -0.014 4.014 5 N -0.316 5.316 6 C 0.126 3.874 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.308 3.692 16 O -0.399 6.399 17 C -0.295 4.295 18 S 0.290 5.710 19 C -0.069 4.069 20 S -0.465 6.465 21 N -0.219 5.219 22 C -0.054 4.054 23 C -0.167 4.167 24 C -0.173 4.173 25 C -0.031 4.031 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.843 13.543 -18.673 23.083 hybrid contribution 0.016 0.494 0.824 0.961 sum -0.827 14.037 -17.849 22.722 Atomic orbital electron populations 1.81197 1.13030 1.08914 1.08854 1.28993 0.95024 0.93023 0.93032 1.19838 0.81635 1.04396 1.03160 1.21425 0.81578 0.98361 1.00033 1.48113 1.05237 1.40013 1.38243 1.19445 0.92681 0.87954 0.87296 1.21442 1.36776 1.00667 0.97985 0.92180 1.24909 0.95236 0.94895 0.98879 1.69927 1.38210 1.11467 1.33554 0.86454 0.78089 0.79755 0.83227 1.19729 1.20943 1.20877 1.19420 0.87667 0.81119 0.80946 1.90734 1.13128 1.67488 1.68591 1.24416 1.01257 1.02125 1.01742 1.86356 1.07027 1.39441 1.38216 1.27927 1.03155 0.88136 0.87712 1.93316 0.95412 1.78333 1.79445 1.47649 1.08777 1.33084 1.32402 1.22703 0.81089 1.00749 1.00854 1.22668 0.98472 0.96916 0.98674 1.22855 0.94294 0.96742 1.03425 1.22822 0.95658 0.90267 0.94329 0.87581 0.86453 0.88363 0.90049 0.94280 0.93327 0.92668 0.85100 0.84857 0.89140 0.89166 0.89784 0.89047 0.88771 0.89975 0.89403 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.10 18.54 42.15 0.78 -6.32 16 2 C 0.22 2.89 15.43 -20.76 -0.32 2.57 16 3 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 4 C 0.11 1.54 5.17 -4.04 -0.02 1.52 16 5 N -0.58 -10.50 2.46 -175.06 -0.43 -10.93 16 6 C 0.24 5.64 5.16 -5.19 -0.03 5.61 16 7 C -0.53 -13.87 9.39 -34.44 -0.32 -14.19 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 11 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.52 9.41 7.69 -10.98 -0.08 9.33 16 16 O -0.52 -11.47 15.44 5.56 0.09 -11.38 16 17 C -0.14 -2.01 3.47 36.01 0.12 -1.88 16 18 S 0.06 0.75 20.45 -107.48 -2.20 -1.45 16 19 C 0.30 3.68 7.48 54.06 0.40 4.08 16 20 S -0.59 -9.11 27.12 -107.48 -2.92 -12.03 16 21 N -0.52 -4.77 3.33 -170.82 -0.57 -5.34 16 22 C 0.07 0.45 6.37 -3.07 -0.02 0.43 16 23 C -0.13 -0.46 6.95 -24.90 -0.17 -0.63 16 24 C -0.13 -0.54 7.08 -24.59 -0.17 -0.72 16 25 C 0.09 0.67 6.62 -2.53 -0.02 0.65 16 26 H 0.11 1.01 7.22 -51.93 -0.38 0.64 16 27 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 29 H 0.08 1.00 6.44 -51.93 -0.33 0.67 16 30 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.13 1.64 6.77 -51.92 -0.35 1.29 16 34 H 0.13 1.84 6.98 -51.91 -0.36 1.48 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.22 8.14 -51.94 -0.42 -0.21 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.91 7.50 -51.93 -0.39 0.52 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -34.67 383.49 -10.62 -45.29 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.96 Total: -2.91 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -0.91 Total: 7.65 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.52 Total: -46.92 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -5.11 Total: -13.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.67 -10.62 -45.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009256732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.374 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds