Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35704 * 116.99657 * 2 1 4 4 C 1.39006 * 119.90752 * 180.02562 * 3 2 1 5 5 C 1.37702 * 120.08896 * 180.02562 * 4 3 2 6 6 C 1.39747 * 119.90986 * 359.97438 * 5 4 3 7 7 C 1.47561 * 120.09133 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99698 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00467 * 180.02562 * 7 6 5 10 10 C 1.39167 * 120.00577 * 185.45525 * 9 7 6 11 11 C 1.38871 * 120.16682 * 317.08358 * 10 9 7 12 12 C 1.38017 * 120.07171 * 180.02562 * 11 10 9 13 13 C 1.38598 * 120.42735 * 0.02562 * 12 11 10 14 14 C 1.37758 * 120.34712 * 359.97438 * 13 12 11 15 15 C 1.39785 * 119.91787 * 0.02562 * 14 13 12 16 16 C 1.47315 * 120.21259 * 180.02562 * 15 14 13 17 17 O 1.21541 * 120.00216 * 178.38923 * 16 15 14 18 18 O 1.34779 * 119.99636 * 358.38918 * 16 15 14 19 19 C 1.34862 * 116.99866 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99759 * 359.97438 * 19 18 16 21 21 C 1.38794 * 120.00486 * 180.02562 * 19 18 16 22 22 N 1.31426 * 119.99511 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00429 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47108 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47434 * 119.99800 * 23 21 19 26 26 H 1.48508 * 109.46817 * 239.99724 * 23 21 19 27 27 C 1.39757 * 119.82347 * 0.25507 * 6 5 4 28 28 C 1.37701 * 119.90664 * 359.53054 * 27 6 5 29 29 H 1.09005 * 109.47167 * 60.00323 * 1 2 3 30 30 H 1.09003 * 109.47088 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47242 * 300.00415 * 1 2 3 32 32 H 1.07999 * 119.95687 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.04284 * 179.97438 * 5 4 3 34 34 H 0.97009 * 119.99689 * 5.45330 * 9 7 6 35 35 H 1.07993 * 119.96400 * 0.02562 * 11 10 9 36 36 H 1.07994 * 119.78663 * 180.28251 * 12 11 10 37 37 H 1.08004 * 119.82628 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.04222 * 180.02562 * 14 13 12 39 39 H 0.97008 * 119.99960 * 179.97438 * 22 21 19 40 40 H 1.08005 * 120.04813 * 179.72600 * 27 6 5 41 41 H 1.07996 * 119.95228 * 180.18690 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 -0.0005 5 6 4.0623 2.5048 0.0000 6 6 3.3030 3.6779 0.0005 7 6 3.9728 4.9928 0.0017 8 8 5.1870 5.0564 0.0026 9 7 3.2388 6.1230 0.0027 10 6 3.8660 7.3602 -0.1108 11 6 5.0275 7.6220 0.6040 12 6 5.6475 8.8498 0.4904 13 6 5.1184 9.8297 -0.3348 14 6 3.9670 9.5887 -1.0517 15 6 3.3272 8.3503 -0.9475 16 6 2.0959 8.0854 -1.7117 17 8 1.5589 6.9973 -1.6409 18 8 1.5649 9.0497 -2.4894 19 6 0.4370 8.7421 -3.1618 20 1 0.0007 7.7591 -3.0631 21 6 -0.1624 9.6884 -3.9812 22 7 0.3689 10.8844 -4.1016 23 14 -1.7250 9.2626 -4.9120 24 1 -2.1168 7.8630 -4.6073 25 1 -2.8142 10.1832 -4.4981 26 1 -1.4859 9.4029 -6.3709 27 6 1.9075 3.6026 0.0059 28 6 1.2862 2.3738 0.0009 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0195 0.3727 -0.0005 33 1 5.1409 2.5587 0.0000 34 1 2.2733 6.0742 0.0826 35 1 5.4460 6.8641 1.2494 36 1 6.5531 9.0469 1.0448 37 1 5.6113 10.7872 -0.4161 38 1 3.5592 10.3556 -1.6936 39 1 -0.0498 11.5457 -4.6746 40 1 1.3171 4.5070 0.0108 41 1 0.2078 2.3147 0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010191319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -87.407323 kcal Electronic energy + Delta-G solvation = -28414.118761 eV Core-core repulsion = 24225.290305 eV Total energy + Delta-G solvation = -4188.828456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78476 -40.08686 -39.03477 -38.00244 -37.03419 -35.42458 -34.35606 -32.30022 -31.47737 -30.89835 -30.71774 -29.13130 -27.58770 -25.70396 -23.98247 -23.36132 -22.88784 -21.94511 -20.36517 -20.17666 -18.58635 -17.85174 -17.68671 -17.27845 -16.90205 -16.14691 -16.03703 -15.46521 -15.21471 -15.02728 -14.60223 -14.48208 -14.45931 -14.17587 -13.94567 -13.73662 -13.61956 -13.41838 -12.80531 -12.74046 -12.56983 -12.34626 -12.14218 -11.77981 -11.56985 -11.32693 -11.29569 -11.21305 -11.03117 -10.57594 -10.49006 -10.08040 -9.93803 -9.80595 -9.23583 -9.08007 -8.71942 -8.59818 -8.47590 -7.92639 -6.54948 -4.17662 0.75188 1.18869 1.22207 1.66202 2.85091 2.95762 3.04734 3.11679 3.18784 3.28074 3.50322 3.80066 3.83539 4.28143 4.46544 4.53739 4.66356 4.78020 4.82694 4.87221 5.06001 5.09939 5.18901 5.21876 5.23953 5.28768 5.43266 5.50185 5.74596 5.76884 5.81657 5.95016 6.11232 6.18508 6.24602 6.37950 6.46025 6.54387 6.73141 6.78865 6.87448 7.07791 7.22995 7.28072 7.66117 7.82607 8.29379 8.58549 8.93547 9.71763 10.62478 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.008410 B = 0.003672 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.448557 B = 7623.479934 C =10732.619884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.152 3.848 4 C -0.165 4.165 5 C -0.018 4.018 6 C -0.171 4.171 7 C 0.565 3.435 8 O -0.533 6.533 9 N -0.651 5.651 10 C 0.189 3.811 11 C -0.129 4.129 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.057 4.057 15 C -0.114 4.114 16 C 0.436 3.564 17 O -0.561 6.561 18 O -0.200 6.200 19 C -0.374 4.374 20 H 0.099 0.901 21 C 0.042 3.958 22 N -0.856 5.856 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.032 4.032 28 C -0.216 4.216 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.420 0.580 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.272 0.728 40 H 0.137 0.863 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -13.316 10.143 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.228 6.228 3 C 0.106 3.894 4 C -0.183 4.183 5 C -0.037 4.037 6 C -0.174 4.174 7 C 0.355 3.645 8 O -0.411 6.411 9 N -0.300 5.300 10 C 0.093 3.907 11 C -0.149 4.149 12 C -0.110 4.110 13 C -0.163 4.163 14 C -0.076 4.076 15 C -0.118 4.118 16 C 0.286 3.714 17 O -0.461 6.461 18 O -0.106 6.106 19 C -0.450 4.450 20 H 0.117 0.883 21 C -0.163 4.163 22 N -0.492 5.492 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.051 4.051 28 C -0.235 4.235 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.263 0.737 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.155 0.845 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.897 -13.565 10.005 17.301 hybrid contribution -1.577 0.052 -0.618 1.694 sum 2.320 -13.513 9.387 16.616 Atomic orbital electron populations 1.23134 0.77958 1.04123 1.01872 1.86028 1.21801 1.26955 1.87996 1.19323 0.92444 0.84174 0.93509 1.20361 0.91183 0.98616 1.08171 1.21055 1.00639 0.89838 0.92188 1.19728 0.93704 0.93158 1.10834 1.18218 0.86775 0.83930 0.75622 1.90754 1.13367 1.87432 1.49594 1.43377 1.12224 1.03462 1.70909 1.17542 0.94070 0.84637 0.94411 1.21014 0.95901 0.97606 1.00342 1.21117 0.99163 0.92732 0.98000 1.21096 0.96898 0.99727 0.98555 1.21479 0.93726 0.95595 0.96791 1.19350 0.97138 0.95945 0.99353 1.20544 0.85249 0.83768 0.81868 1.90480 1.63443 1.25484 1.66706 1.83907 1.38296 1.38901 1.49521 1.21354 0.99461 1.00792 1.23429 0.88350 1.25394 0.99451 0.94645 0.96841 1.69986 1.39127 1.03911 1.36142 0.85587 0.79635 0.79030 0.78861 1.18894 1.20040 1.20045 1.21281 0.93450 0.98030 0.92347 1.21193 1.00495 0.91891 1.09920 0.92180 0.88095 0.92318 0.84511 0.83865 0.73708 0.84796 0.85716 0.85578 0.83777 0.91855 0.84512 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.27 10.48 -18.82 -0.20 -3.47 16 3 C 0.15 1.75 6.70 -39.01 -0.26 1.49 16 4 C -0.16 -1.87 9.97 -39.49 -0.39 -2.27 16 5 C -0.02 -0.23 9.58 -39.21 -0.38 -0.61 16 6 C -0.17 -2.51 5.87 -104.96 -0.62 -3.12 16 7 C 0.56 9.71 7.58 -12.46 -0.09 9.62 16 8 O -0.53 -10.06 14.27 5.29 0.08 -9.99 16 9 N -0.65 -11.59 4.27 -10.61 -0.05 -11.64 16 10 C 0.19 3.54 6.16 -83.49 -0.51 3.02 16 11 C -0.13 -2.10 8.66 -39.43 -0.34 -2.44 16 12 C -0.09 -1.29 10.03 -39.53 -0.40 -1.69 16 13 C -0.14 -2.14 10.02 -39.62 -0.40 -2.53 16 14 C -0.06 -1.05 9.61 -39.18 -0.38 -1.42 16 15 C -0.11 -2.37 5.89 -104.82 -0.62 -2.98 16 16 C 0.44 10.76 7.82 34.42 0.27 11.03 16 17 O -0.56 -13.99 13.33 -19.30 -0.26 -14.25 16 18 O -0.20 -5.58 8.99 -21.79 -0.20 -5.77 16 19 C -0.37 -10.67 9.65 30.94 0.30 -10.37 16 20 H 0.10 2.79 6.86 -52.49 -0.36 2.43 16 21 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 22 N -0.86 -24.15 13.67 55.49 0.76 -23.39 16 23 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 24 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.03 -0.43 9.53 -39.21 -0.37 -0.81 16 28 C -0.22 -2.51 9.01 -39.49 -0.36 -2.87 16 29 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.71 7.64 -52.49 -0.40 1.31 16 34 H 0.42 7.29 4.97 -40.82 -0.20 7.08 16 35 H 0.13 2.10 6.79 -52.49 -0.36 1.75 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 38 H 0.14 2.76 7.61 -52.49 -0.40 2.36 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 40 H 0.14 1.82 6.41 -52.48 -0.34 1.49 16 41 H 0.14 1.26 6.28 -52.49 -0.33 0.93 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -33.41 359.76 -7.12 -40.53 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.01 Total: 10.81 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.65 Total: -3.74 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.71 Total: -35.03 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.58 Total: -33.48 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.41 -7.12 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010191319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.875 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds