Wall clock time and date at job start Tue Mar 31 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35984 * 116.99961 * 2 1 4 4 C 1.38695 * 119.99681 * 179.97438 * 3 2 1 5 5 C 1.38136 * 119.99791 * 180.29854 * 4 3 2 6 6 C 1.38704 * 119.99803 * 359.44242 * 5 4 3 7 7 O 1.35979 * 119.99786 * 180.29663 * 6 5 4 8 8 C 1.42901 * 117.00402 * 354.11936 * 7 6 5 9 9 H 1.08998 * 109.47058 * 325.48768 * 8 7 6 10 10 C 1.53008 * 109.47030 * 85.48513 * 8 7 6 11 11 C 1.50700 * 109.47266 * 205.48633 * 8 7 6 12 12 O 1.21282 * 120.00064 * 359.97438 * 11 8 7 13 13 N 1.34777 * 119.99893 * 180.02562 * 11 8 7 14 14 C 1.39234 * 119.99791 * 185.96915 * 13 11 8 15 15 C 1.39482 * 119.82986 * 215.63171 * 14 13 11 16 16 C 1.36377 * 120.16978 * 179.75885 * 15 14 13 17 17 C 1.40866 * 119.82461 * 0.50763 * 16 15 14 18 18 C 1.41162 * 120.16260 * 179.72015 * 17 16 15 19 19 H 1.07993 * 119.99812 * 161.24064 * 18 17 16 20 20 C 1.39908 * 119.99915 * 341.23902 * 18 17 16 21 21 N 1.30869 * 119.99868 * 327.95353 * 20 18 17 22 22 Si 1.86797 * 119.99947 * 147.95146 * 20 18 17 23 23 H 1.48507 * 109.46906 * 94.99074 * 22 20 18 24 24 H 1.48496 * 109.47351 * 214.98861 * 22 20 18 25 25 H 1.48505 * 109.46899 * 334.99268 * 22 20 18 26 26 C 1.40866 * 119.67471 * 359.74536 * 17 16 15 27 27 C 1.36376 * 119.82646 * 359.97438 * 26 17 16 28 28 C 1.38691 * 119.99821 * 0.55946 * 6 5 4 29 29 C 1.38128 * 120.00306 * 359.71571 * 28 6 5 30 30 H 1.09000 * 109.47177 * 300.00513 * 1 2 3 31 31 H 1.09001 * 109.46786 * 59.99553 * 1 2 3 32 32 H 1.08994 * 109.47201 * 179.97438 * 1 2 3 33 33 H 1.07994 * 120.00076 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00284 * 179.70018 * 5 4 3 35 35 H 1.09000 * 109.46554 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47169 * 300.00070 * 10 8 7 37 37 H 1.08998 * 109.46991 * 60.00214 * 10 8 7 38 38 H 0.97001 * 119.99810 * 5.96042 * 13 11 8 39 39 H 1.08001 * 119.91646 * 0.02562 * 15 14 13 40 40 H 1.07996 * 120.08831 * 180.25215 * 16 15 14 41 41 H 0.97006 * 120.00044 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.08936 * 179.97438 * 26 17 16 43 43 H 1.08003 * 119.91260 * 179.97438 * 27 26 17 44 44 H 1.08006 * 119.99734 * 179.70156 * 28 6 5 45 45 H 1.08003 * 120.00432 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2842 0.0005 5 6 4.0586 2.5149 0.0068 6 6 3.3032 3.6782 0.0008 7 8 3.9206 4.8898 0.0008 8 6 5.3430 4.8931 0.1376 9 1 5.6470 4.0766 0.7926 10 6 5.9881 4.7108 -1.2378 11 6 5.7875 6.2051 0.7310 12 8 4.9671 7.0539 1.0090 13 7 7.0970 6.4356 0.9519 14 6 7.4982 7.5935 1.6129 15 6 8.6826 8.2295 1.2414 16 6 9.0797 9.3667 1.8809 17 6 8.2956 9.8928 2.9262 18 6 8.7029 11.0662 3.5970 19 1 7.9872 11.6362 4.1707 20 6 10.0337 11.4907 3.5185 21 7 10.9961 10.6103 3.4119 22 14 10.4368 13.3140 3.5659 23 1 10.7628 13.7128 4.9587 24 1 11.6027 13.5862 2.6874 25 1 9.2653 14.0924 3.0893 26 6 7.1034 9.2418 3.2994 27 6 6.7164 8.1086 2.6467 28 6 1.9182 3.6056 0.0003 29 6 1.2910 2.3749 -0.0002 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.0196 0.3784 0.0005 34 1 5.1371 2.5715 0.0121 35 1 7.0731 4.7129 -1.1333 36 1 5.6666 3.7618 -1.6670 37 1 5.6841 5.5274 -1.8927 38 1 7.7598 5.7948 0.6504 39 1 9.2847 7.8228 0.4423 40 1 9.9949 9.8604 1.5894 41 1 11.9189 10.9045 3.3579 42 1 6.4973 9.6391 4.1002 43 1 5.8028 7.6082 2.9319 44 1 1.3300 4.5114 0.0005 45 1 0.2125 2.3183 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010391045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:09 Heat of formation + Delta-G solvation = -57.053000 kcal Electronic energy + Delta-G solvation = -27845.850388 eV Core-core repulsion = 23794.171289 eV Total energy + Delta-G solvation = -4051.679099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.83449 -39.91702 -38.90882 -37.28563 -36.39618 -34.52018 -33.29023 -32.15175 -31.13845 -29.59881 -29.46498 -28.89947 -27.41049 -25.48185 -24.26649 -23.16112 -22.25289 -21.43092 -20.72259 -19.59735 -18.76765 -17.93460 -17.55234 -17.30103 -16.36433 -16.07788 -16.01043 -15.66110 -15.24412 -14.98402 -14.82477 -14.32710 -14.05263 -13.93163 -13.59573 -13.46283 -13.12937 -12.91783 -12.76638 -12.72168 -12.56927 -12.22774 -12.10071 -12.01324 -11.86973 -11.63257 -11.40296 -11.16187 -10.98127 -10.89823 -10.65557 -10.56654 -10.15622 -9.75899 -9.46864 -9.34161 -9.13118 -8.72202 -7.93622 -7.58153 -7.18311 -6.93370 -4.29824 0.99320 1.24243 2.49877 2.72283 2.91523 3.01964 3.03021 3.07180 3.10122 3.33449 3.50070 3.83702 3.86384 4.45929 4.49633 4.52588 4.59582 4.73597 4.78828 4.80918 4.89375 4.90916 5.05732 5.11685 5.27289 5.38683 5.43931 5.65496 5.67449 5.73902 5.88571 6.05258 6.09964 6.16080 6.30728 6.36732 6.73015 6.88856 6.96199 7.02694 7.10914 7.24343 7.30035 7.53081 7.65297 7.86104 7.98809 8.21431 8.23461 8.51569 8.69401 8.80986 8.95982 9.97405 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.036759 B = 0.001767 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.537470 B =15839.496713 C =16161.323372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.110 4.110 5 C -0.173 4.173 6 C 0.101 3.899 7 O -0.282 6.282 8 C 0.068 3.932 9 H 0.096 0.904 10 C -0.176 4.176 11 C 0.501 3.499 12 O -0.510 6.510 13 N -0.643 5.643 14 C -0.023 4.023 15 C -0.100 4.100 16 C -0.172 4.172 17 C 0.110 3.890 18 C -0.460 4.460 19 H 0.082 0.918 20 C 0.087 3.913 21 N -0.768 5.768 22 Si 0.898 3.102 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.224 4.224 27 C -0.065 4.065 28 C -0.110 4.110 29 C -0.166 4.166 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.394 0.606 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.284 0.716 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 -18.403 -8.457 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.040 3.960 4 C -0.129 4.129 5 C -0.192 4.192 6 C 0.056 3.944 7 O -0.195 6.195 8 C 0.008 3.992 9 H 0.114 0.886 10 C -0.234 4.234 11 C 0.285 3.715 12 O -0.384 6.384 13 N -0.288 5.288 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.192 4.192 17 C 0.108 3.892 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.135 4.135 21 N -0.390 5.390 22 Si 0.721 3.279 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.244 4.244 27 C -0.085 4.085 28 C -0.129 4.129 29 C -0.185 4.185 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.228 0.772 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.154 0.846 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.525 -17.844 -8.261 22.792 hybrid contribution 0.587 0.393 -0.119 0.716 sum -10.938 -17.451 -8.379 22.235 Atomic orbital electron populations 1.23033 0.78584 1.03818 1.01331 1.86065 1.21182 1.26758 1.89417 1.18890 0.92283 0.84209 1.00640 1.20186 0.91365 0.97956 1.03351 1.21157 1.00365 0.91403 1.06266 1.18986 0.92351 0.84390 0.98691 1.86246 1.19759 1.25990 1.87501 1.22231 0.80509 0.97940 0.98517 0.88618 1.22349 1.01349 1.03909 0.95763 1.19938 0.83472 0.87969 0.80077 1.90738 1.52090 1.45327 1.50251 1.42800 1.05994 1.22602 1.57367 1.16986 1.00033 0.93253 1.01179 1.20145 0.95765 0.96630 0.99488 1.20683 1.02003 0.97658 0.98828 1.17611 0.90487 0.90985 0.90157 1.19555 0.94271 1.07382 1.27587 0.89962 1.25973 0.96072 0.99851 0.91619 1.69942 1.01265 1.36512 1.31310 0.86472 0.79172 0.83116 0.79119 1.19412 1.19840 1.18047 1.20549 1.01130 0.98656 1.04041 1.20188 0.97659 0.96841 0.93837 1.20257 0.91503 0.98159 1.02955 1.21048 1.00044 0.91355 1.06069 0.92678 0.92731 0.88362 0.84898 0.84467 0.90233 0.90860 0.90529 0.77233 0.89210 0.87018 0.90540 0.88698 0.88440 0.84610 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.03 10.50 -19.69 -0.21 -3.24 16 3 C 0.08 0.86 6.69 -39.24 -0.26 0.60 16 4 C -0.11 -1.09 9.98 -39.45 -0.39 -1.48 16 5 C -0.17 -1.79 8.26 -39.45 -0.33 -2.12 16 6 C 0.10 1.27 6.60 -39.24 -0.26 1.01 16 7 O -0.28 -4.20 9.33 -39.58 -0.37 -4.57 16 8 C 0.07 0.88 2.65 -27.88 -0.07 0.81 16 9 H 0.10 1.01 6.30 -51.93 -0.33 0.68 16 10 C -0.18 -1.73 9.07 37.16 0.34 -1.40 16 11 C 0.50 8.90 6.93 -10.99 -0.08 8.82 16 12 O -0.51 -11.56 14.37 -14.35 -0.21 -11.76 16 13 N -0.64 -11.13 5.23 -9.74 -0.05 -11.18 16 14 C -0.02 -0.51 6.24 -83.58 -0.52 -1.03 16 15 C -0.10 -2.26 9.90 -39.79 -0.39 -2.66 16 16 C -0.17 -4.36 8.75 -39.26 -0.34 -4.70 16 17 C 0.11 2.94 5.61 -106.80 -0.60 2.34 16 18 C -0.46 -12.09 8.95 -37.85 -0.34 -12.43 16 19 H 0.08 2.09 8.01 -52.49 -0.42 1.67 16 20 C 0.09 2.12 4.82 -17.34 -0.08 2.03 16 21 N -0.77 -19.04 11.53 55.55 0.64 -18.40 16 22 Si 0.90 18.02 29.66 -169.99 -5.04 12.98 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 C -0.22 -5.71 9.74 -39.26 -0.38 -6.10 16 27 C -0.07 -1.59 8.57 -39.79 -0.34 -1.93 16 28 C -0.11 -1.25 9.98 -39.45 -0.39 -1.65 16 29 C -0.17 -1.61 9.03 -39.45 -0.36 -1.97 16 30 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.14 5.43 -52.49 -0.28 0.86 16 35 H 0.08 0.62 7.44 -51.93 -0.39 0.23 16 36 H 0.07 0.60 6.94 -51.93 -0.36 0.24 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.39 5.18 8.08 -40.82 -0.33 4.85 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.11 2.87 6.28 -52.49 -0.33 2.54 16 41 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 42 H 0.09 2.31 8.06 -52.49 -0.42 1.88 16 43 H 0.10 2.34 6.61 -52.48 -0.35 1.99 16 44 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 45 H 0.13 0.95 6.29 -52.48 -0.33 0.62 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -32.22 377.03 -8.95 -41.17 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.58 Total: 10.02 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -3.82 Total: -20.69 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.59 Total: -29.59 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.78 Total: -19.57 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.04 Total: 12.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.22 -8.95 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010391045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.884 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds