Wall clock time and date at job start Tue Mar 31 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.80992 * 2 1 4 4 C 1.53050 * 109.65875 * 239.46898 * 2 1 3 5 5 C 1.50482 * 109.73442 * 289.06168 * 4 2 1 6 6 C 1.40407 * 119.40242 * 163.37391 * 5 4 2 7 7 C 1.43198 * 120.46863 * 359.55624 * 6 5 4 8 8 N 5.04524 * 99.69406 * 246.09340 * 2 1 3 9 9 C 1.40525 * 119.06572 * 179.53145 * 6 5 4 10 10 O 1.35382 * 119.86613 * 180.02562 * 9 6 5 11 11 C 1.34855 * 116.99825 * 179.97438 * 10 9 6 12 12 H 1.08001 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.38687 * 119.99735 * 180.02562 * 11 10 9 14 14 N 1.31523 * 120.00021 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99780 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47276 * 59.99818 * 15 13 11 17 17 H 1.48495 * 109.47333 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47054 * 299.99840 * 15 13 11 19 19 N 1.32116 * 120.26414 * 0.04072 * 9 6 5 20 20 C 1.32867 * 121.54384 * 0.09272 * 19 9 6 21 21 C 1.47426 * 119.46638 * 179.97438 * 20 19 9 22 22 C 1.36179 * 125.95832 * 324.98184 * 21 20 19 23 23 C 1.40718 * 106.73426 * 180.02562 * 22 21 20 24 24 C 1.34890 * 107.05876 * 359.97438 * 23 22 21 25 25 O 1.34176 * 108.70690 * 359.73912 * 24 23 22 26 26 C 1.36373 * 121.77873 * 343.13968 * 5 4 2 27 27 C 1.50547 * 121.59971 * 0.55775 * 26 5 4 28 28 O 1.42765 * 110.25728 * 343.88745 * 27 26 5 29 29 H 1.09006 * 109.46965 * 299.47368 * 1 2 3 30 30 H 1.09002 * 109.47423 * 59.47156 * 1 2 3 31 31 H 1.08999 * 109.47395 * 179.47332 * 1 2 3 32 32 H 1.09001 * 109.47045 * 180.52931 * 3 2 1 33 33 H 1.09000 * 109.47398 * 300.52564 * 3 2 1 34 34 H 1.08993 * 109.47466 * 60.52699 * 3 2 1 35 35 H 1.09004 * 109.42197 * 168.98221 * 4 2 1 36 36 H 1.08997 * 109.38936 * 49.12408 * 4 2 1 37 37 H 0.96993 * 119.99739 * 180.02562 * 14 13 11 38 38 H 1.08006 * 126.62988 * 359.96356 * 22 21 20 39 39 H 1.07997 * 126.47328 * 180.02562 * 23 22 21 40 40 H 1.08000 * 125.64343 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.34063 * 223.65302 * 27 26 5 42 42 H 1.08999 * 109.21279 * 104.04741 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0485 1.4394 0.0000 4 6 2.0449 -0.7322 -1.2415 5 6 1.7802 -2.2075 -1.1076 6 6 1.8403 -3.0248 -2.2476 7 6 2.1411 -2.4620 -3.5296 8 7 2.3796 -2.0154 -4.5465 9 6 1.6017 -4.4031 -2.1128 10 8 1.6560 -5.2063 -3.2013 11 6 1.4182 -6.5192 -3.0057 12 1 1.1971 -6.8862 -2.0143 13 6 1.4584 -7.3984 -4.0776 14 7 1.7281 -6.9515 -5.2849 15 14 1.1282 -9.2169 -3.8069 16 1 -0.2361 -9.3945 -3.2483 17 1 1.2299 -9.9366 -5.1018 18 1 2.1279 -9.7652 -2.8554 19 7 1.3243 -4.9181 -0.9282 20 6 1.2604 -4.1605 0.1614 21 6 0.9466 -4.7833 1.4603 22 6 0.1010 -5.8317 1.6609 23 6 0.1016 -6.0939 3.0435 24 6 0.9385 -5.2035 3.6147 25 8 1.4513 -4.4180 2.6553 26 6 1.4866 -2.7782 0.0957 27 6 1.3990 -1.9600 1.3564 28 8 2.0115 -0.6851 1.1619 29 1 -0.3633 0.5057 0.8947 30 1 -0.3634 0.5220 -0.8852 31 1 -0.3634 -1.0276 -0.0094 32 1 3.1385 1.4330 -0.0095 33 1 1.6806 1.9582 -0.8852 34 1 1.6960 1.9526 0.8946 35 1 3.1171 -0.5639 -1.3429 36 1 1.5330 -0.3507 -2.1249 37 1 1.7559 -7.5663 -6.0345 38 1 -0.4620 -6.3592 0.9051 39 1 -0.4610 -6.8633 3.5512 40 1 1.1620 -5.1367 4.6692 41 1 1.9083 -2.4856 2.1641 42 1 0.3509 -1.8202 1.6212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012325079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:12 Heat of formation + Delta-G solvation = 9.833910 kcal Electronic energy + Delta-G solvation = -29635.886811 eV Core-core repulsion = 25548.993714 eV Total energy + Delta-G solvation = -4086.893098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.49500 -40.74708 -39.05044 -37.08860 -35.95520 -33.89944 -33.15042 -32.77774 -32.38136 -31.36579 -28.90193 -27.93296 -27.30822 -25.67417 -25.00974 -23.78907 -22.22033 -21.42707 -20.67600 -19.57256 -18.45473 -18.03963 -17.93135 -16.71992 -16.35221 -16.01474 -15.80188 -15.34477 -15.02817 -14.70825 -14.57212 -14.01712 -13.86771 -13.71205 -13.37551 -13.12102 -12.80856 -12.75101 -12.65145 -12.53611 -12.36060 -12.33170 -12.11849 -12.01851 -11.96002 -11.84553 -11.78100 -11.44448 -11.27958 -11.02533 -10.65115 -10.62384 -10.27261 -9.86994 -9.64819 -9.23328 -9.10702 -8.94089 -8.45406 -7.63517 -6.74516 -4.27503 0.75351 1.73525 1.95015 2.70008 2.81956 3.02273 3.06069 3.07821 3.39706 3.67287 3.71430 3.81930 4.31677 4.35860 4.50378 4.55581 4.76970 4.80974 4.88314 4.90612 5.03779 5.07012 5.12488 5.23147 5.47685 5.48539 5.53875 5.60069 5.65511 5.70203 5.72653 5.78967 5.87205 5.91288 5.98613 6.05085 6.11556 6.12215 6.20055 6.33048 6.53456 6.61270 6.84836 7.14641 7.16113 7.25812 7.73158 8.20374 8.37149 8.71771 9.23299 10.39874 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009503 B = 0.004900 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.685411 B = 5712.385206 C = 8387.492171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.112 3.888 3 C -0.137 4.137 4 C -0.108 4.108 5 C 0.068 3.932 6 C -0.159 4.159 7 C 0.283 3.717 8 N -0.444 5.444 9 C 0.347 3.653 10 O -0.131 6.131 11 C -0.371 4.371 12 H 0.116 0.884 13 C 0.038 3.962 14 N -0.843 5.843 15 Si 0.953 3.047 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.265 1.265 19 N -0.514 5.514 20 C 0.287 3.713 21 C 0.024 3.976 22 C -0.153 4.153 23 C -0.216 4.216 24 C -0.035 4.035 25 O -0.166 6.166 26 C -0.258 4.258 27 C 0.122 3.878 28 O -0.367 6.367 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.278 0.722 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.205 0.795 41 H 0.107 0.893 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 7.747 16.734 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.073 3.927 3 C -0.194 4.194 4 C -0.145 4.145 5 C 0.060 3.940 6 C -0.168 4.168 7 C -0.030 4.030 8 N -0.123 5.123 9 C 0.164 3.836 10 O -0.022 6.022 11 C -0.446 4.446 12 H 0.133 0.867 13 C -0.169 4.169 14 N -0.474 5.474 15 Si 0.776 3.224 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.190 1.190 19 N -0.240 5.240 20 C 0.142 3.858 21 C -0.026 4.026 22 C -0.173 4.173 23 C -0.235 4.235 24 C -0.103 4.103 25 O -0.062 6.062 26 C -0.263 4.263 27 C 0.045 3.955 28 O -0.285 6.285 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.221 0.779 41 H 0.125 0.875 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.830 7.759 14.621 16.792 hybrid contribution -0.441 -0.881 0.182 1.002 sum -3.271 6.878 14.803 16.647 Atomic orbital electron populations 1.22466 0.95173 1.03436 1.02723 1.21480 0.93477 0.92567 0.85169 1.21750 1.02043 0.93035 1.02541 1.21210 1.03250 0.90723 0.99362 1.18785 0.90644 0.94504 0.90104 1.15482 1.22333 0.90938 0.88054 1.25011 0.92870 0.92876 0.92250 1.81100 1.11435 1.09608 1.10112 1.19499 0.91575 0.87066 0.85441 1.84135 1.71111 1.20679 1.26279 1.21717 1.47265 0.78178 0.97477 0.86669 1.25577 0.96004 1.01205 0.94148 1.70048 1.41091 1.36833 0.99425 0.85579 0.79697 0.78878 0.78229 1.18985 1.20115 1.18971 1.67238 1.21042 1.38118 0.97607 1.17831 0.92137 0.87885 0.87947 1.19853 1.00497 0.98856 0.83373 1.21940 1.01581 0.97195 0.96587 1.21797 1.04237 1.03132 0.94374 1.24167 0.98794 0.93653 0.93699 1.84061 1.56515 1.50651 1.14958 1.19973 1.15488 0.94436 0.96367 1.21171 0.98051 0.82304 0.93946 1.88080 1.65225 1.30408 1.44832 0.91672 0.91377 0.91283 0.91613 0.91041 0.91624 0.88760 0.89296 0.91198 0.82646 0.83242 0.77881 0.87491 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 7.80 37.16 0.29 -1.72 16 2 C 0.11 1.37 1.13 -90.59 -0.10 1.27 16 3 C -0.14 -1.32 8.86 37.16 0.33 -0.99 16 4 C -0.11 -1.54 4.16 -27.96 -0.12 -1.65 16 5 C 0.07 1.19 5.37 -104.58 -0.56 0.62 16 6 C -0.16 -3.31 5.78 -106.29 -0.61 -3.93 16 7 C 0.28 6.20 13.61 -22.47 -0.31 5.89 16 8 N -0.44 -10.15 18.54 41.84 0.78 -9.37 16 9 C 0.35 8.15 7.46 -16.57 -0.12 8.03 16 10 O -0.13 -3.60 9.18 1.10 0.01 -3.59 16 11 C -0.37 -9.97 9.64 30.90 0.30 -9.67 16 12 H 0.12 2.94 6.71 -52.49 -0.35 2.59 16 13 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 14 N -0.84 -23.80 13.67 55.48 0.76 -23.04 16 15 Si 0.95 19.74 29.55 -169.99 -5.02 14.72 16 16 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 19 N -0.51 -11.11 8.51 -9.52 -0.08 -11.19 16 20 C 0.29 5.25 6.68 -82.93 -0.55 4.70 16 21 C 0.02 0.38 6.44 -36.58 -0.24 0.15 16 22 C -0.15 -2.22 10.76 -39.39 -0.42 -2.64 16 23 C -0.22 -2.44 10.88 -39.83 -0.43 -2.87 16 24 C -0.03 -0.35 12.08 29.54 0.36 0.00 16 25 O -0.17 -2.23 8.09 4.76 0.04 -2.20 16 26 C -0.26 -4.29 5.12 -104.62 -0.54 -4.83 16 27 C 0.12 1.70 5.26 35.93 0.19 1.89 16 28 O -0.37 -5.10 10.35 -35.23 -0.36 -5.46 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.87 5.79 -51.93 -0.30 0.57 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 36 H 0.09 1.22 7.54 -51.93 -0.39 0.83 16 37 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.16 2.30 8.06 -52.48 -0.42 1.88 16 39 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.20 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.11 1.45 5.75 -51.93 -0.30 1.15 16 42 H 0.06 0.73 6.80 -51.93 -0.35 0.37 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -31.08 359.60 -5.74 -36.82 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.63 Total: 2.73 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.64 Total: -4.84 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 1.45 Total: -43.60 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.32 Total: -11.25 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.08 -5.74 -36.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012325079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.657 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds