Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00370 * 2 1 4 4 H 1.48501 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47346 * 300.00494 * 3 2 1 6 6 H 1.48508 * 109.47012 * 60.00152 * 3 2 1 7 7 C 1.37880 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00160 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00207 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00057 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00256 * 179.97438 * 11 10 9 14 14 O 1.42897 * 109.47591 * 179.97438 * 13 11 10 15 15 C 1.34932 * 117.00536 * 179.97438 * 14 13 11 16 16 O 1.21659 * 119.99919 * 0.02562 * 15 14 13 17 17 C 1.41764 * 120.00329 * 179.97438 * 15 14 13 18 18 C 1.35234 * 119.99743 * 180.02562 * 17 15 14 19 19 C 1.46699 * 119.99639 * 180.02562 * 18 17 15 20 20 C 1.39225 * 120.67642 * 0.23435 * 19 18 17 21 21 C 1.38675 * 120.62051 * 180.29728 * 20 19 18 22 22 C 1.36245 * 121.74381 * 359.45333 * 21 20 19 23 23 C 1.40395 * 120.68381 * 0.26323 * 22 21 20 24 24 C 1.40784 * 121.42224 * 179.97438 * 23 22 21 25 25 C 1.36654 * 118.13014 * 180.02562 * 24 23 22 26 26 C 1.39220 * 119.95335 * 0.02562 * 25 24 23 27 27 N 1.31289 * 121.66782 * 359.97438 * 26 25 24 28 28 C 1.33165 * 121.28706 * 0.02562 * 27 26 25 29 29 H 0.97000 * 119.99132 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46954 * 60.00667 * 9 7 2 31 31 H 1.08995 * 109.47407 * 300.00545 * 9 7 2 32 32 H 0.97000 * 119.99766 * 0.02562 * 10 9 7 33 33 H 1.08999 * 109.46835 * 59.99928 * 13 11 10 34 34 H 1.09000 * 109.47368 * 300.00425 * 13 11 10 35 35 H 1.07994 * 119.99730 * 0.02562 * 17 15 14 36 36 H 1.08004 * 120.00542 * 0.02562 * 18 17 15 37 37 H 1.08002 * 119.69045 * 0.03314 * 20 19 18 38 38 H 1.08002 * 119.13141 * 179.74179 * 21 20 19 39 39 H 1.07995 * 119.66123 * 180.27968 * 22 21 20 40 40 H 1.08002 * 120.93518 * 0.02562 * 24 23 22 41 41 H 1.08004 * 120.02282 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.16036 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5612 -5.1049 -0.0020 13 6 2.7327 -6.0289 -0.0016 14 8 2.0182 -7.2664 -0.0015 15 6 2.7530 -8.3981 -0.0025 16 8 3.9679 -8.3345 -0.0030 17 6 2.1094 -9.6612 -0.0019 18 6 2.8459 -10.7954 -0.0024 19 6 2.1798 -12.1024 -0.0024 20 6 0.7904 -12.1916 -0.0067 21 6 0.1620 -13.4278 -0.0005 22 6 0.8699 -14.5919 -0.0010 23 6 2.2738 -14.5766 -0.0024 24 6 3.0208 -15.7699 -0.0025 25 6 4.3841 -15.6766 -0.0034 26 6 4.9953 -14.4257 -0.0037 27 7 4.2938 -13.3159 -0.0036 28 6 2.9624 -13.3393 -0.0028 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8896 32 1 3.1565 -3.4355 -0.0002 33 1 3.3594 -5.9715 0.8883 34 1 3.3594 -5.9708 -0.8916 35 1 1.0309 -9.7176 -0.0011 36 1 3.9245 -10.7389 -0.0029 37 1 0.1965 -11.2896 -0.0107 38 1 -0.9173 -13.4689 0.0002 39 1 0.3458 -15.5361 -0.0006 40 1 2.5301 -16.7321 -0.0018 41 1 4.9871 -16.5727 -0.0030 42 1 6.0737 -14.3669 -0.0040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012552765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = -49.237351 kcal Electronic energy + Delta-G solvation = -26242.948541 eV Core-core repulsion = 22153.493922 eV Total energy + Delta-G solvation = -4089.454620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20059 -40.60999 -38.72378 -37.74206 -36.51542 -34.99397 -34.21194 -32.95769 -32.38137 -31.08741 -30.08806 -28.95411 -26.78718 -25.36596 -24.28809 -24.05498 -22.59772 -21.61788 -19.97680 -19.82144 -18.69191 -18.05417 -17.55947 -17.23083 -17.11531 -16.61274 -16.19923 -15.50881 -15.17035 -15.06314 -14.87831 -14.81684 -14.53206 -14.46932 -14.11344 -13.81788 -13.58280 -13.08921 -13.01390 -12.65834 -12.41716 -12.34179 -12.20962 -11.97328 -11.74915 -11.59073 -11.39570 -10.97176 -10.92441 -10.66338 -10.57079 -10.32801 -10.18171 -9.97447 -9.40202 -9.33276 -9.12846 -8.76588 -8.35744 -7.95480 -6.18059 -4.25137 -0.52805 0.32283 0.74096 1.68195 2.42924 2.62049 2.97691 3.23063 3.24046 3.31045 3.34306 3.62718 3.64555 3.89993 4.12380 4.17862 4.27697 4.36197 4.37210 4.47781 4.57572 4.77814 4.84833 4.92091 5.04806 5.12597 5.18285 5.24183 5.31560 5.36128 5.39960 5.41377 5.50533 5.62177 5.81012 5.88750 6.00960 6.14459 6.27065 6.41918 7.25513 7.34702 7.42078 7.48345 7.62365 7.76709 7.93998 8.53680 8.73981 9.00210 9.41279 10.92173 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.001498 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.826932 B =18688.042335 C =19507.422091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.048 3.952 14 O -0.322 6.322 15 C 0.500 3.500 16 O -0.515 6.515 17 C -0.199 4.199 18 C 0.013 3.987 19 C -0.057 4.057 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.082 4.082 23 C -0.107 4.107 24 C -0.054 4.054 25 C -0.177 4.177 26 C 0.135 3.865 27 N -0.472 5.472 28 C 0.148 3.852 29 H 0.266 0.734 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.393 0.607 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -35.655 -0.005 36.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.413 6.413 13 C -0.030 4.030 14 O -0.237 6.237 15 C 0.348 3.652 16 O -0.406 6.406 17 C -0.218 4.218 18 C -0.005 4.005 19 C -0.058 4.058 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.101 4.101 23 C -0.109 4.109 24 C -0.080 4.080 25 C -0.197 4.197 26 C -0.035 4.035 27 N -0.180 5.180 28 C 0.024 3.976 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.226 0.774 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.860 -34.720 -0.007 35.211 hybrid contribution 0.600 0.218 0.000 0.638 sum 6.460 -34.502 -0.006 35.102 Atomic orbital electron populations 1.69991 1.06118 1.27258 1.48853 1.24956 0.94931 0.99494 0.94630 0.86335 0.79833 0.82832 0.77753 1.19598 1.20784 1.20779 1.21259 0.93392 0.90313 1.53299 0.91696 1.19176 0.88201 0.81581 0.98025 1.46357 1.11501 1.05372 1.72468 1.19910 0.89101 0.83997 0.78658 1.90699 1.16361 1.84577 1.49640 1.22462 0.94576 0.81514 1.04450 1.86256 1.39960 1.13874 1.83627 1.19933 0.85870 0.85648 0.73782 1.90896 1.14958 1.88359 1.46408 1.21304 1.01828 0.89529 1.09143 1.22338 1.01271 0.89208 0.87701 1.19717 0.92234 0.90762 1.03086 1.21698 0.93177 0.98962 0.95226 1.20791 1.00927 0.91858 1.00006 1.21067 0.92142 0.99195 0.97685 1.18770 0.94915 0.93785 1.03419 1.21526 0.94194 0.97634 0.94598 1.21932 0.95620 0.99701 1.02461 1.23072 1.00693 0.87371 0.92397 1.67828 1.06365 1.31511 1.12258 1.19790 0.89417 0.91501 0.96854 0.92456 0.95249 0.95259 0.77413 0.88770 0.88758 0.83932 0.83311 0.83885 0.84786 0.84984 0.84135 0.84259 0.82033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.86 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.64 7.60 -52.48 -0.40 1.25 16 9 C 0.25 6.64 5.43 -5.20 -0.03 6.61 16 10 N -0.71 -14.97 5.55 -61.48 -0.34 -15.31 16 11 C 0.50 10.35 7.91 -10.99 -0.09 10.26 16 12 O -0.54 -13.37 16.50 -14.35 -0.24 -13.61 16 13 C 0.05 0.78 5.86 36.01 0.21 0.99 16 14 O -0.32 -5.39 9.64 -47.89 -0.46 -5.86 16 15 C 0.50 7.39 7.70 32.08 0.25 7.64 16 16 O -0.51 -8.47 15.88 -19.39 -0.31 -8.77 16 17 C -0.20 -2.29 9.34 -39.31 -0.37 -2.66 16 18 C 0.01 0.15 9.24 -37.24 -0.34 -0.20 16 19 C -0.06 -0.55 6.04 -102.85 -0.62 -1.17 16 20 C -0.07 -0.53 9.41 -39.05 -0.37 -0.90 16 21 C -0.12 -0.69 9.88 -40.14 -0.40 -1.08 16 22 C -0.08 -0.47 9.72 -39.49 -0.38 -0.85 16 23 C -0.11 -0.80 5.74 -106.84 -0.61 -1.41 16 24 C -0.05 -0.28 9.90 -39.19 -0.39 -0.67 16 25 C -0.18 -0.86 10.02 -39.79 -0.40 -1.26 16 26 C 0.13 0.91 11.15 -17.42 -0.19 0.72 16 27 N -0.47 -4.72 9.73 -9.55 -0.09 -4.81 16 28 C 0.15 1.45 6.77 -82.74 -0.56 0.89 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 33 H 0.09 1.34 8.13 -51.93 -0.42 0.91 16 34 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 35 H 0.14 1.32 6.10 -52.49 -0.32 1.00 16 36 H 0.15 1.80 7.16 -52.48 -0.38 1.42 16 37 H 0.14 0.84 6.17 -52.49 -0.32 0.52 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 41 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 42 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -36.47 376.77 -9.45 -45.92 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.70 Total: 2.71 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -4.71 Total: 3.51 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.30 Total: -45.42 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -1.01 Total: -28.24 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.47 -9.45 -45.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012552765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.315 kcal (2) G-P(sol) polarization free energy of solvation -36.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds