Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39634 * 120.44205 * 1.02822 * 3 2 1 5 5 C 1.39735 * 118.31438 * 180.25980 * 4 3 2 6 6 C 1.47187 * 120.43239 * 179.75431 * 5 4 3 7 7 O 1.21650 * 119.99464 * 185.77663 * 6 5 4 8 8 N 1.34776 * 120.00321 * 5.77350 * 6 5 4 9 9 C 1.39842 * 120.00285 * 184.43974 * 8 6 5 10 10 C 1.38895 * 120.06905 * 324.60283 * 9 8 6 11 11 C 1.38108 * 119.93005 * 179.79424 * 10 9 8 12 12 C 1.38292 * 120.06941 * 0.48443 * 11 10 9 13 13 C 1.38283 * 120.14276 * 359.74629 * 12 11 10 14 14 C 1.38114 * 120.07452 * 0.02562 * 13 12 11 15 15 C 1.40972 * 119.12904 * 359.73396 * 5 4 3 16 16 N 1.37958 * 119.59697 * 179.97438 * 15 5 4 17 17 N 1.32258 * 120.80391 * 0.02562 * 15 5 4 18 18 C 1.32506 * 121.84693 * 359.97195 * 17 15 5 19 19 S 1.76202 * 119.60152 * 180.02562 * 18 17 15 20 20 C 1.76197 * 100.00397 * 0.02562 * 19 18 17 21 21 H 1.08003 * 119.99965 * 0.02562 * 20 19 18 22 22 C 1.38872 * 119.99984 * 179.72203 * 20 19 18 23 23 N 1.31486 * 120.00096 * 0.27500 * 22 20 19 24 24 Si 1.86798 * 119.99665 * 180.27617 * 22 20 19 25 25 H 1.48491 * 109.47294 * 60.00193 * 24 22 20 26 26 H 1.48500 * 109.46723 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47194 * 299.99678 * 24 22 20 28 28 H 1.07993 * 120.84047 * 359.97438 * 4 3 2 29 29 H 0.97004 * 119.99710 * 4.43100 * 8 6 5 30 30 H 1.08001 * 120.03696 * 0.02562 * 10 9 8 31 31 H 1.07999 * 119.96870 * 180.22905 * 11 10 9 32 32 H 1.07993 * 119.92560 * 179.72222 * 12 11 10 33 33 H 1.08001 * 119.96410 * 179.97438 * 13 12 11 34 34 H 1.08003 * 120.03534 * 179.97438 * 14 13 12 35 35 H 0.96990 * 119.99705 * 204.94458 * 16 15 5 36 36 H 0.97002 * 119.99403 * 24.94441 * 16 15 5 37 37 H 0.96998 * 120.00172 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -1.2027 -0.0216 5 6 4.6724 -1.1503 -0.0151 6 6 5.4650 -2.3904 -0.0317 7 8 6.6754 -2.3401 0.0801 8 7 4.8500 -3.5816 -0.1706 9 6 5.5916 -4.7646 -0.0934 10 6 6.8864 -4.8084 -0.5943 11 6 7.6177 -5.9771 -0.5127 12 6 7.0586 -7.1059 0.0580 13 6 5.7681 -7.0670 0.5533 14 6 5.0331 -5.9001 0.4790 15 6 5.3119 0.1058 0.0071 16 7 6.6900 0.1688 0.0142 17 7 4.6067 1.2247 0.0222 18 6 3.2817 1.2161 0.0167 19 16 2.4014 2.7423 0.0369 20 6 3.7515 3.8742 0.0593 21 1 4.7663 3.5044 0.0570 22 6 3.5109 5.2418 0.0737 23 7 2.2756 5.6921 0.0760 24 14 4.9425 6.4418 0.0896 25 1 5.7740 6.2365 -1.1234 26 1 4.4222 7.8326 0.1043 27 1 5.7690 6.2102 1.3014 28 1 2.7576 -2.1499 -0.0382 29 1 3.8929 -3.6182 -0.3241 30 1 7.3221 -3.9283 -1.0437 31 1 8.6258 -6.0107 -0.8986 32 1 7.6309 -8.0198 0.1165 33 1 5.3342 -7.9504 0.9980 34 1 4.0251 -5.8706 0.8657 35 1 7.1380 0.9462 0.3825 36 1 7.2108 -0.5645 -0.3491 37 1 2.1075 6.6473 0.0863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012800344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = 60.344543 kcal Electronic energy + Delta-G solvation = -24877.285584 eV Core-core repulsion = 21131.795319 eV Total energy + Delta-G solvation = -3745.490265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84408 -39.49128 -38.15588 -36.22044 -35.11615 -33.91682 -32.96882 -32.39310 -31.05276 -30.08147 -28.90189 -26.02457 -24.72122 -23.23006 -23.11106 -22.56808 -20.78194 -19.09650 -18.46599 -17.87272 -17.13363 -16.98237 -16.51636 -16.27423 -15.41533 -15.16950 -15.08830 -14.80587 -14.41194 -14.17738 -13.90845 -13.88462 -13.48678 -13.26092 -12.95561 -12.90320 -12.66193 -12.53801 -12.13922 -11.85721 -11.48874 -11.42969 -11.30688 -11.20993 -10.52233 -10.47976 -10.35820 -9.96200 -9.90186 -9.33008 -9.13990 -9.08480 -8.90951 -8.30282 -7.85311 -7.11771 -6.72408 -4.43707 0.87813 1.21483 1.26535 1.35528 2.67004 2.86778 2.96003 3.07403 3.08230 3.11715 3.18544 3.52781 3.69947 3.77066 3.99501 4.29860 4.37238 4.68221 4.69594 4.76312 4.79434 4.91143 5.00246 5.05223 5.25115 5.40024 5.43572 5.46563 5.62891 5.85376 5.89396 6.15044 6.18549 6.21489 6.35797 6.40829 6.55172 6.90032 7.27288 7.33218 7.64477 7.77468 8.01237 8.12163 8.18566 8.61817 8.79456 10.33898 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002729 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.067832 B =10258.573046 C =11698.473345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.275 3.725 3 C -0.165 4.165 4 C 0.064 3.936 5 C -0.322 4.322 6 C 0.587 3.413 7 O -0.538 6.538 8 N -0.677 5.677 9 C 0.154 3.846 10 C -0.121 4.121 11 C -0.104 4.104 12 C -0.141 4.141 13 C -0.103 4.103 14 C -0.149 4.149 15 C 0.500 3.500 16 N -0.831 5.831 17 N -0.540 5.540 18 C 0.189 3.811 19 S 0.184 5.816 20 C -0.543 4.543 21 H 0.116 0.884 22 C 0.076 3.924 23 N -0.862 5.862 24 Si 0.935 3.065 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.267 1.267 28 H 0.132 0.868 29 H 0.409 0.591 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.401 0.599 36 H 0.417 0.583 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -19.413 -0.789 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.039 4.039 3 C -0.182 4.182 4 C 0.034 3.966 5 C -0.338 4.338 6 C 0.380 3.620 7 O -0.418 6.418 8 N -0.321 5.321 9 C 0.059 3.941 10 C -0.141 4.141 11 C -0.122 4.122 12 C -0.160 4.160 13 C -0.122 4.122 14 C -0.170 4.170 15 C 0.248 3.752 16 N -0.379 5.379 17 N -0.265 5.265 18 C -0.066 4.066 19 S 0.441 5.559 20 C -0.691 4.691 21 H 0.134 0.866 22 C -0.136 4.136 23 N -0.494 5.494 24 Si 0.760 3.240 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.192 1.192 28 H 0.150 0.850 29 H 0.246 0.754 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.230 0.770 36 H 0.256 0.744 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.770 -17.794 -0.696 18.719 hybrid contribution 1.912 -0.261 -0.007 1.930 sum 7.682 -18.055 -0.703 19.634 Atomic orbital electron populations 1.81154 1.11789 1.07254 1.11300 1.25207 0.92094 0.93691 0.92917 1.15971 0.85123 0.93813 1.23274 1.21107 0.91946 0.96321 0.87178 1.19419 0.93160 0.92125 1.29116 1.17942 0.87130 0.82507 0.74432 1.90540 1.14108 1.86210 1.50905 1.43395 1.11986 1.04239 1.72493 1.17774 0.92873 0.85875 0.97559 1.21344 0.93898 0.98983 0.99862 1.21078 0.99709 0.92504 0.98929 1.21119 0.95733 0.98542 1.00623 1.20916 0.94464 0.97334 0.99466 1.20945 1.01159 0.93032 1.01846 1.18353 0.86051 0.87351 0.83459 1.42590 1.02500 1.25837 1.67008 1.67969 1.05925 1.26417 1.26165 1.24249 0.91959 0.99280 0.91064 1.83845 1.09773 0.89034 1.73223 1.23648 0.96006 0.91855 1.57599 0.86573 1.25283 0.97454 0.98041 0.92786 1.69896 1.19491 1.16252 1.43744 0.85923 0.80408 0.78042 0.79615 1.19224 1.20644 1.19212 0.85033 0.75379 0.84201 0.85896 0.86239 0.85892 0.85756 0.77013 0.74432 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.35 18.54 41.84 0.78 -7.57 16 2 C 0.28 4.91 14.28 -22.47 -0.32 4.59 16 3 C -0.17 -2.82 5.77 -106.42 -0.61 -3.43 16 4 C 0.06 0.87 9.32 -38.50 -0.36 0.51 16 5 C -0.32 -4.68 5.90 -104.67 -0.62 -5.30 16 6 C 0.59 7.82 7.57 -12.63 -0.10 7.72 16 7 O -0.54 -7.96 11.27 5.23 0.06 -7.90 16 8 N -0.68 -7.18 5.27 -10.90 -0.06 -7.24 16 9 C 0.15 1.68 6.29 -83.72 -0.53 1.15 16 10 C -0.12 -1.37 8.69 -39.39 -0.34 -1.71 16 11 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16 12 C -0.14 -1.19 10.04 -39.54 -0.40 -1.59 16 13 C -0.10 -0.86 10.04 -39.61 -0.40 -1.25 16 14 C -0.15 -1.37 9.97 -39.39 -0.39 -1.76 16 15 C 0.50 8.41 7.74 -155.45 -1.20 7.21 16 16 N -0.83 -11.95 8.50 31.27 0.27 -11.69 16 17 N -0.54 -10.71 8.43 -10.61 -0.09 -10.80 16 18 C 0.19 3.82 7.01 -16.23 -0.11 3.70 16 19 S 0.18 4.31 20.61 -107.50 -2.22 2.09 16 20 C -0.54 -13.79 9.26 30.97 0.29 -13.51 16 21 H 0.12 2.92 6.53 -52.48 -0.34 2.58 16 22 C 0.08 1.91 5.49 -17.46 -0.10 1.82 16 23 N -0.86 -22.77 13.22 55.49 0.73 -22.03 16 24 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 H 0.13 1.23 6.56 -52.49 -0.34 0.88 16 29 H 0.41 3.27 6.96 -40.82 -0.28 2.99 16 30 H 0.14 1.72 6.25 -52.49 -0.33 1.39 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.40 5.36 8.95 -40.82 -0.37 4.99 16 36 H 0.42 5.62 6.08 -40.82 -0.25 5.37 16 37 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -29.17 346.01 -8.67 -37.84 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -2.74 Total: 10.76 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -5.59 Total: -3.23 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 1.63 Total: -59.33 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.06 Total: -7.90 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -2.22 Total: 2.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.17 -8.67 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012800344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.184 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds