Wall clock time and date at job start Tue Mar 31 2020 05:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00242 * 2 1 4 4 N 1.34783 * 119.99919 * 180.02562 * 2 1 3 5 5 C 1.47079 * 120.88096 * 6.26303 * 4 2 1 6 6 C 1.53236 * 108.52222 * 231.21223 * 5 4 2 7 7 N 1.46900 * 109.33654 * 306.16949 * 6 5 4 8 8 C 1.38081 * 110.99718 * 187.25320 * 7 6 5 9 9 N 1.32407 * 119.46270 * 295.72546 * 8 7 6 10 10 C 1.32374 * 122.53120 * 179.97438 * 9 8 7 11 11 N 1.38070 * 119.46615 * 180.27992 * 10 9 8 12 12 C 1.40567 * 121.06759 * 0.02562 * 10 9 8 13 13 C 1.43204 * 120.60637 * 179.97438 * 12 10 9 14 14 N 9.35277 * 130.52639 * 129.07268 * 4 1 2 15 15 C 1.42269 * 118.77714 * 359.97438 * 12 10 9 16 16 C 1.40458 * 121.11649 * 180.02562 * 15 12 10 17 17 H 1.08006 * 119.99416 * 310.41759 * 16 15 12 18 18 C 1.40514 * 120.00210 * 130.40884 * 16 15 12 19 19 N 1.30488 * 120.00028 * 157.74261 * 18 16 15 20 20 Si 1.86805 * 119.99887 * 337.74587 * 18 16 15 21 21 H 1.48500 * 109.46792 * 95.63753 * 20 18 16 22 22 H 1.48503 * 109.46793 * 215.63715 * 20 18 16 23 23 H 1.48501 * 109.47052 * 335.63911 * 20 18 16 24 24 C 1.40518 * 119.45987 * 115.70792 * 8 7 6 25 25 C 1.43195 * 120.61331 * 0.04213 * 24 8 7 26 26 N 6.89494 * 119.51775 * 190.57367 * 2 1 3 27 27 C 1.46898 * 111.27126 * 63.10948 * 7 6 5 28 28 C 1.47071 * 120.87816 * 186.29085 * 4 2 1 29 29 H 1.09004 * 109.46686 * 265.69555 * 1 2 3 30 30 H 1.09003 * 109.46749 * 25.69391 * 1 2 3 31 31 H 1.08994 * 109.46986 * 145.69721 * 1 2 3 32 32 H 1.08997 * 109.62615 * 111.49686 * 5 4 2 33 33 H 1.09005 * 109.78830 * 351.01733 * 5 4 2 34 34 H 1.08995 * 109.49537 * 186.21536 * 6 5 4 35 35 H 1.08996 * 109.49427 * 66.13013 * 6 5 4 36 36 H 0.96994 * 120.00270 * 179.72196 * 11 10 9 37 37 H 0.96994 * 119.99815 * 359.73023 * 11 10 9 38 38 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.49442 * 56.84552 * 27 7 6 40 40 H 1.09004 * 109.49858 * 176.93246 * 27 7 6 41 41 H 1.08998 * 109.63406 * 248.49584 * 28 4 2 42 42 H 1.08998 * 109.63312 * 9.07925 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4717 -2.4483 -0.1388 6 6 1.9227 -3.3789 0.9920 7 7 3.3884 -3.4766 0.9861 8 6 3.8244 -4.4299 1.8849 9 7 3.6070 -4.2527 3.1789 10 6 3.9979 -5.1270 4.0927 11 7 3.7328 -4.8811 5.4252 12 6 4.6738 -6.3043 3.7280 13 6 5.0927 -7.2432 4.7249 14 7 5.4247 -7.9882 5.5156 15 6 4.9340 -6.5459 2.3503 16 6 5.6051 -7.7063 1.9309 17 1 6.5318 -7.9950 2.4046 18 6 5.0709 -8.4915 0.8954 19 7 5.8479 -9.2862 0.2117 20 14 3.2481 -8.3976 0.4972 21 1 3.0335 -7.4389 -0.6163 22 1 2.7596 -9.7411 0.0950 23 1 2.5026 -7.9382 1.6965 24 6 4.4911 -5.5726 1.4112 25 6 4.7214 -5.7540 0.0096 26 7 4.9041 -5.8981 -1.1010 27 6 4.0104 -2.1738 1.2577 28 6 3.6449 -1.1937 0.1378 29 1 -0.3633 -0.0771 1.0248 30 1 -0.3633 0.9261 -0.4456 31 1 -0.3633 -0.8489 -0.5791 32 1 1.7131 -2.8983 -1.1017 33 1 0.3963 -2.2840 -0.0708 34 1 1.4917 -4.3688 0.8422 35 1 1.5887 -2.9773 1.9486 36 1 4.0121 -5.5184 6.1010 37 1 3.2672 -4.0711 5.6856 38 1 5.4791 -9.8285 -0.5029 39 1 3.6473 -1.7889 2.2106 40 1 5.0935 -2.2896 1.3006 41 1 4.0953 -1.5232 -0.7985 42 1 4.0069 -0.1972 0.3907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013132952.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:58 Heat of formation + Delta-G solvation = 77.280931 kcal Electronic energy + Delta-G solvation = -29511.474055 eV Core-core repulsion = 25492.091181 eV Total energy + Delta-G solvation = -4019.382873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.54577 -39.62872 -37.87099 -36.07783 -35.65289 -34.80094 -34.34709 -33.15565 -31.83952 -31.49182 -29.88215 -28.97749 -27.10658 -26.49939 -23.75731 -22.92828 -22.16090 -21.15754 -19.41172 -19.14202 -18.18274 -17.43713 -17.18824 -16.47759 -16.06665 -15.95032 -15.60617 -15.35637 -15.17911 -14.78236 -14.34427 -14.26891 -13.90636 -13.61488 -13.30592 -13.14281 -12.99826 -12.75487 -12.52375 -12.33635 -12.24574 -12.12122 -12.07060 -12.00558 -11.84127 -11.62119 -11.42230 -11.33967 -11.23361 -10.98028 -10.88118 -10.40287 -9.95892 -9.85822 -9.53011 -9.32863 -8.82754 -8.53879 -8.40755 -7.39888 -7.33498 -5.18208 1.34276 2.04731 2.49745 2.85590 2.91007 2.95140 3.04994 3.49762 3.54971 3.63295 3.69498 3.88320 3.94825 4.23078 4.31000 4.41952 4.75169 4.84545 4.93215 4.98633 5.02054 5.12032 5.15344 5.21152 5.24034 5.32852 5.40903 5.45347 5.60088 5.68294 5.76554 5.86511 5.98773 6.10039 6.27598 6.36110 6.51944 6.67539 6.91028 7.01120 7.27050 7.40410 7.54630 7.76363 7.84475 7.93324 8.03547 8.18601 8.45514 8.64910 8.78108 9.59115 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.004193 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.255110 B = 6676.637415 C = 7904.440159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.553 6.553 4 N -0.613 5.613 5 C 0.109 3.891 6 C 0.048 3.952 7 N -0.488 5.488 8 C 0.411 3.589 9 N -0.632 5.632 10 C 0.493 3.507 11 N -0.847 5.847 12 C -0.246 4.246 13 C 0.301 3.699 14 N -0.486 5.486 15 C 0.193 3.807 16 C -0.430 4.430 17 H 0.111 0.889 18 C 0.096 3.904 19 N -0.754 5.754 20 Si 0.877 3.123 21 H -0.241 1.241 22 H -0.272 1.272 23 H -0.241 1.241 24 C -0.184 4.184 25 C 0.306 3.694 26 N -0.468 5.468 27 C 0.051 3.949 28 C 0.116 3.884 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.405 0.595 37 H 0.400 0.600 38 H 0.296 0.704 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 11.170 1.393 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.303 3.697 3 O -0.431 6.431 4 N -0.347 5.347 5 C -0.014 4.014 6 C -0.080 4.080 7 N -0.212 5.212 8 C 0.182 3.818 9 N -0.358 5.358 10 C 0.253 3.747 11 N -0.389 5.389 12 C -0.260 4.260 13 C -0.011 4.011 14 N -0.165 5.165 15 C 0.181 3.819 16 C -0.458 4.458 17 H 0.129 0.871 18 C -0.131 4.131 19 N -0.374 5.374 20 Si 0.698 3.302 21 H -0.165 1.165 22 H -0.198 1.198 23 H -0.163 1.163 24 C -0.197 4.197 25 C -0.007 4.007 26 N -0.146 5.146 27 C -0.076 4.076 28 C -0.006 4.006 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.235 0.765 37 H 0.229 0.771 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.431 10.752 0.485 14.988 hybrid contribution -0.644 -0.471 0.758 1.101 sum -11.075 10.281 1.243 15.162 Atomic orbital electron populations 1.21966 0.92013 1.04850 1.04692 1.20777 0.90574 0.82968 0.75426 1.90702 1.70790 1.31098 1.50484 1.48225 1.07890 1.06198 1.72374 1.21982 0.96826 0.82927 0.99709 1.22445 0.86753 1.00484 0.98274 1.59885 1.07549 1.06990 1.46758 1.18866 0.88378 0.88869 0.85705 1.66876 1.33781 1.33642 1.01504 1.17652 0.85657 0.86578 0.84809 1.42146 1.65509 1.27193 1.04006 1.16276 1.21227 0.97400 0.91130 1.25178 0.91798 0.92273 0.91833 1.81099 1.12997 1.10379 1.11988 1.17128 0.85771 0.91384 0.87587 1.19456 1.07799 1.05184 1.13357 0.87102 1.26193 1.01215 0.93697 0.92015 1.69511 1.38439 1.16832 1.12638 0.86768 0.81463 0.79821 0.82153 1.16505 1.19775 1.16336 1.16605 1.18262 0.98277 0.86574 1.24661 0.92264 0.91914 0.91873 1.80963 1.11363 1.09773 1.12510 1.22446 1.00336 0.87293 0.97533 1.21748 0.79473 1.00190 0.99222 0.88834 0.89098 0.89807 0.90161 0.88834 0.89334 0.92377 0.76541 0.77095 0.89280 0.92489 0.89190 0.90580 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.48 36.01 0.34 -0.93 16 2 C 0.51 6.04 7.80 -10.98 -0.09 5.95 16 3 O -0.55 -8.72 16.59 5.56 0.09 -8.63 16 4 N -0.61 -6.96 3.01 -172.46 -0.52 -7.48 16 5 C 0.11 1.05 6.43 -3.60 -0.02 1.02 16 6 C 0.05 0.58 5.41 -3.70 -0.02 0.56 16 7 N -0.49 -7.23 3.93 -172.74 -0.68 -7.91 16 8 C 0.41 7.09 5.26 -155.38 -0.82 6.27 16 9 N -0.63 -10.33 9.67 -11.33 -0.11 -10.44 16 10 C 0.49 8.17 7.74 -155.40 -1.20 6.96 16 11 N -0.85 -10.76 8.96 31.23 0.28 -10.48 16 12 C -0.25 -4.76 5.84 -105.54 -0.62 -5.37 16 13 C 0.30 5.99 13.26 -22.47 -0.30 5.69 16 14 N -0.49 -10.09 18.54 41.84 0.78 -9.32 16 15 C 0.19 4.11 4.51 -105.95 -0.48 3.63 16 16 C -0.43 -10.16 8.29 -37.89 -0.31 -10.48 16 17 H 0.11 2.81 8.06 -52.48 -0.42 2.38 16 18 C 0.10 2.27 4.61 -17.27 -0.08 2.19 16 19 N -0.75 -18.40 13.91 55.58 0.77 -17.62 16 20 Si 0.88 18.43 25.00 -169.99 -4.25 14.18 16 21 H -0.24 -5.13 5.90 56.52 0.33 -4.80 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.24 -4.93 7.11 56.52 0.40 -4.53 16 24 C -0.18 -3.70 4.78 -105.55 -0.50 -4.20 16 25 C 0.31 6.61 10.22 -22.52 -0.23 6.38 16 26 N -0.47 -10.68 17.82 41.79 0.74 -9.93 16 27 C 0.05 0.67 5.36 -3.70 -0.02 0.65 16 28 C 0.12 1.42 6.58 -3.60 -0.02 1.40 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.44 6.22 -51.93 -0.32 0.12 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.61 5.55 -51.93 -0.29 0.32 16 34 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 35 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.40 4.91 7.62 -40.82 -0.31 4.60 16 37 H 0.40 4.14 8.94 -40.82 -0.37 3.77 16 38 H 0.30 6.62 8.29 -40.82 -0.34 6.28 16 39 H 0.06 0.77 8.01 -51.93 -0.42 0.35 16 40 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.20 7.11 -51.93 -0.37 0.83 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -28.82 359.76 -6.49 -35.31 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.65 Total: 7.18 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: -4.37 Total: 19.72 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: 1.27 Total: -73.18 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.25 Total: 14.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.82 -6.49 -35.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013132952.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.588 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds