Wall clock time and date at job start Tue Mar 31 2020 04:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 C 1.53000 * 109.46929 * 240.00570 * 2 1 3 5 5 C 1.50696 * 109.47632 * 120.00307 * 2 1 3 6 6 N 1.26876 * 118.79459 * 0.18095 * 5 2 1 7 7 N 1.37810 * 127.54347 * 179.90425 * 6 5 2 8 8 C 1.46500 * 117.00090 * 135.34298 * 7 6 5 9 9 C 1.50696 * 109.46944 * 269.74457 * 8 7 6 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 C 1.33636 * 125.99431 * 315.06381 * 7 6 5 18 18 O 1.21676 * 119.24576 * 187.87912 * 17 7 6 19 19 C 1.47016 * 121.50879 * 7.89997 * 17 7 6 20 20 C 1.35615 * 127.03371 * 214.42369 * 19 17 7 21 21 C 1.41673 * 107.71320 * 181.34106 * 20 19 17 22 22 C 1.40091 * 133.31052 * 179.77866 * 21 20 19 23 23 C 1.36431 * 119.86043 * 180.42953 * 22 21 20 24 24 C 1.38935 * 120.59068 * 359.97438 * 23 22 21 25 25 C 1.37629 * 120.65779 * 359.84040 * 24 23 22 26 26 C 1.39235 * 119.86898 * 0.03118 * 25 24 23 27 27 N 1.37149 * 133.33425 * 180.75550 * 26 25 24 28 28 C 1.46826 * 127.11624 * 2.47957 * 27 26 25 29 29 H 1.08994 * 109.47109 * 299.99411 * 1 2 3 30 30 H 1.09000 * 109.47722 * 59.99939 * 1 2 3 31 31 H 1.09007 * 109.46949 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47268 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47468 * 300.00578 * 3 2 1 34 34 H 1.09008 * 109.46805 * 60.00442 * 3 2 1 35 35 H 1.09004 * 109.47378 * 299.99378 * 4 2 1 36 36 H 1.09001 * 109.47426 * 60.00035 * 4 2 1 37 37 H 1.09008 * 109.46911 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.46609 * 149.74639 * 8 7 6 39 39 H 1.08999 * 109.46486 * 29.74718 * 8 7 6 40 40 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 41 41 H 1.08005 * 126.14735 * 1.31700 * 20 19 17 42 42 H 1.08005 * 120.06977 * 0.42509 * 22 21 20 43 43 H 1.08000 * 119.70800 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.66863 * 179.81873 * 24 23 22 45 45 H 1.08000 * 120.06634 * 180.02562 * 25 24 23 46 46 H 1.09006 * 109.72785 * 241.19562 * 28 27 26 47 47 H 1.09005 * 109.72998 * 1.83113 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2303 6 7 1.1879 -1.1870 2.0486 7 7 1.4445 -1.8662 3.2199 8 6 0.6544 -1.4886 4.3944 9 6 1.3660 -0.3946 5.1479 10 1 2.3123 -0.0185 4.7881 11 6 0.8094 0.1255 6.2972 12 7 -0.3398 -0.3371 6.7387 13 14 1.6918 1.4811 7.2316 14 1 1.2527 2.8033 6.7175 15 1 1.3662 1.3789 8.6768 16 1 3.1579 1.3388 7.0433 17 6 2.3440 -2.8412 3.3816 18 8 2.3711 -3.4570 4.4306 19 6 3.3019 -3.1863 2.3211 20 6 3.7843 -4.4189 2.0257 21 6 4.7007 -4.2778 0.9546 22 6 5.4953 -5.1866 0.2437 23 6 6.3063 -4.7405 -0.7587 24 6 6.3522 -3.3903 -1.0831 25 6 5.5785 -2.4783 -0.4021 26 6 4.7404 -2.9084 0.6232 27 7 3.8624 -2.2616 1.4549 28 6 3.5193 -0.8340 1.4436 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2072 -2.1393 37 1 3.1300 -0.7207 -1.2496 38 1 0.5310 -2.3557 5.0432 39 1 -0.3246 -1.1319 4.0743 40 1 -0.7979 -1.0412 6.2537 41 1 3.5181 -5.3422 2.5188 42 1 5.4659 -6.2381 0.4886 43 1 6.9181 -5.4432 -1.3048 44 1 7.0017 -3.0532 -1.8773 45 1 5.6214 -1.4310 -0.6625 46 1 3.7927 -0.3823 2.3972 47 1 4.0509 -0.3342 0.6338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013564667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:09 Heat of formation + Delta-G solvation = 67.983759 kcal Electronic energy + Delta-G solvation = -30468.188996 eV Core-core repulsion = 26617.369222 eV Total energy + Delta-G solvation = -3850.819774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84756 -39.54205 -38.45635 -36.87906 -35.75491 -33.54493 -33.03371 -31.47949 -30.29079 -29.38668 -27.74345 -27.41351 -26.99217 -26.22199 -24.21548 -23.19511 -22.41885 -21.64549 -20.61589 -19.81621 -18.55387 -17.27805 -17.18569 -16.68409 -16.02806 -15.76868 -15.49584 -15.19357 -14.55782 -14.35855 -14.23947 -14.16258 -13.83029 -13.81040 -13.74689 -13.33449 -13.02495 -12.67608 -12.55133 -12.45975 -12.17333 -11.86058 -11.79377 -11.69501 -11.68063 -11.43726 -11.34115 -11.14528 -10.99678 -10.93303 -10.80303 -10.70845 -10.25784 -10.20235 -9.87064 -9.38884 -9.13172 -8.49783 -8.22481 -7.97312 -7.65328 -6.51478 -4.25083 0.80400 1.54456 1.83104 2.19539 2.68344 2.86333 3.34306 3.39951 3.50595 3.55407 3.83980 4.14556 4.16053 4.43200 4.52939 4.61163 4.77145 4.84641 4.86394 4.89778 5.00481 5.19804 5.25274 5.28300 5.32109 5.37358 5.44759 5.55025 5.61905 5.63703 5.66138 5.78899 5.87781 5.90538 5.94209 5.94681 6.07235 6.21779 6.24693 6.37888 6.46351 6.50187 6.66140 6.66758 6.81183 6.90364 6.98385 7.11041 7.15529 7.80986 8.19119 8.33654 8.65162 8.87141 9.43751 10.86655 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.004330 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.496650 B = 6465.103809 C = 7710.796640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.006 4.006 3 C -0.141 4.141 4 C -0.138 4.138 5 C 0.108 3.892 6 N -0.226 5.226 7 N -0.419 5.419 8 C 0.242 3.758 9 C -0.615 4.615 10 H 0.047 0.953 11 C 0.027 3.973 12 N -0.902 5.902 13 Si 1.074 2.926 14 H -0.286 1.286 15 H -0.280 1.280 16 H -0.290 1.290 17 C 0.560 3.440 18 O -0.505 6.505 19 C 0.026 3.974 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.061 4.061 23 C -0.153 4.153 24 C -0.093 4.093 25 C -0.129 4.129 26 C 0.115 3.885 27 N -0.463 5.463 28 C 0.109 3.891 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.270 0.730 41 H 0.153 0.847 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.687 -1.194 -20.516 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.008 4.008 3 C -0.199 4.199 4 C -0.196 4.196 5 C -0.087 4.087 6 N -0.029 5.029 7 N -0.237 5.237 8 C 0.124 3.876 9 C -0.653 4.653 10 H 0.065 0.935 11 C -0.178 4.178 12 N -0.537 5.537 13 Si 0.902 3.098 14 H -0.212 1.212 15 H -0.206 1.206 16 H -0.216 1.216 17 C 0.345 3.655 18 O -0.377 6.377 19 C -0.082 4.082 20 C -0.149 4.149 21 C -0.119 4.119 22 C -0.079 4.079 23 C -0.173 4.173 24 C -0.113 4.113 25 C -0.150 4.150 26 C 0.006 3.994 27 N -0.147 5.147 28 C -0.015 4.015 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.171 0.829 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.137 0.863 46 H 0.118 0.882 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.611 -0.400 -18.195 20.133 hybrid contribution 1.119 -0.964 -1.271 1.949 sum 9.729 -1.365 -19.466 21.805 Atomic orbital electron populations 1.21714 0.92259 1.02780 1.02082 1.19489 0.97434 0.94515 0.89390 1.21900 1.00906 0.93958 1.03143 1.21880 1.00935 1.00627 0.96151 1.24981 0.90374 0.95637 0.97694 1.71836 1.31594 1.04826 0.94626 1.48507 1.36299 1.30826 1.08096 1.19664 0.91159 0.97177 0.79564 1.22133 1.08689 1.21939 1.12555 0.93490 1.25787 0.96224 1.00707 0.95109 1.70761 1.14847 1.27218 1.40874 0.83466 0.74831 0.74962 0.76550 1.21227 1.20553 1.21582 1.17364 0.80064 0.82007 0.86070 1.90866 1.69576 1.51240 1.26058 1.20699 1.01872 0.90089 0.95555 1.20708 0.99375 0.96170 0.98634 1.18202 1.01543 0.92480 0.99718 1.20368 0.94501 0.98569 0.94480 1.20571 1.01465 0.95744 0.99488 1.20787 0.98419 0.92952 0.99142 1.19992 0.98622 0.99779 0.96599 1.18257 0.94833 0.91569 0.94779 1.44464 1.35312 1.06830 1.28116 1.21631 0.95038 0.79473 1.05376 0.91286 0.92563 0.92158 0.92519 0.91306 0.91441 0.92393 0.91346 0.92611 0.93034 0.94302 0.91943 0.82901 0.85898 0.86071 0.85761 0.86310 0.88238 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 7.67 37.16 0.28 -1.32 16 2 C -0.01 -0.06 0.80 -155.66 -0.12 -0.19 16 3 C -0.14 -1.35 8.29 37.16 0.31 -1.04 16 4 C -0.14 -1.33 8.29 37.16 0.31 -1.02 16 5 C 0.11 1.70 5.38 -79.36 -0.43 1.27 16 6 N -0.23 -4.45 9.11 34.51 0.31 -4.14 16 7 N -0.42 -9.76 3.21 -62.98 -0.20 -9.97 16 8 C 0.24 6.48 4.54 -5.20 -0.02 6.45 16 9 C -0.61 -17.58 9.37 -34.44 -0.32 -17.90 16 10 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 11 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 12 N -0.90 -27.21 13.65 55.43 0.76 -26.45 16 13 Si 1.07 25.40 29.90 -169.99 -5.08 20.31 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.56 13.04 7.33 -13.21 -0.10 12.94 16 18 O -0.51 -13.37 16.16 5.21 0.08 -13.28 16 19 C 0.03 0.51 6.37 -82.21 -0.52 -0.01 16 20 C -0.12 -2.10 10.75 -39.21 -0.42 -2.52 16 21 C -0.11 -1.71 6.16 -106.86 -0.66 -2.37 16 22 C -0.06 -0.72 10.06 -39.54 -0.40 -1.12 16 23 C -0.15 -1.54 9.97 -39.97 -0.40 -1.94 16 24 C -0.09 -0.91 10.01 -39.55 -0.40 -1.31 16 25 C -0.13 -1.47 9.89 -39.43 -0.39 -1.86 16 26 C 0.11 1.67 6.86 -84.09 -0.58 1.09 16 27 N -0.46 -7.57 2.96 -111.41 -0.33 -7.90 16 28 C 0.11 1.59 5.79 -5.01 -0.03 1.56 16 29 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.06 0.46 7.06 -51.93 -0.37 0.10 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.49 7.14 -51.92 -0.37 0.12 16 38 H 0.05 1.50 6.90 -51.93 -0.36 1.14 16 39 H 0.04 1.05 7.99 -51.93 -0.42 0.64 16 40 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 41 H 0.15 2.41 8.06 -52.48 -0.42 1.99 16 42 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.12 1.07 7.76 -52.49 -0.41 0.66 16 46 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 47 H 0.11 1.20 5.72 -51.93 -0.30 0.90 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -34.16 384.05 -9.43 -43.59 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.78 Total: 0.64 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -3.98 Total: -8.61 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.54 Total: -48.45 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.16 -9.43 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013564667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.578 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds