Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42099 * 110.54398 * 2 1 4 4 O 1.42112 * 110.53980 * 223.25063 * 2 1 3 5 5 N 1.65599 * 104.45232 * 111.62785 * 2 1 3 6 6 C 1.37799 * 120.00075 * 64.99519 * 5 2 1 7 7 N 1.29096 * 124.82437 * 359.96122 * 6 5 2 8 8 C 1.34415 * 117.97074 * 180.02562 * 7 6 5 9 9 C 1.41454 * 128.55831 * 179.97438 * 8 7 6 10 10 C 1.35682 * 120.77260 * 180.02562 * 9 8 7 11 11 C 1.40239 * 120.57645 * 0.04748 * 10 9 8 12 12 C 1.47356 * 120.17982 * 179.97438 * 11 10 9 13 13 O 1.21647 * 119.99731 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00199 * 359.97438 * 12 11 10 15 15 C 1.36899 * 119.99900 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00099 * 359.97438 * 15 14 12 17 17 C 1.39015 * 119.99968 * 180.02562 * 15 14 12 18 18 N 1.31390 * 120.00267 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00145 * 359.97438 * 17 15 14 20 20 H 1.48490 * 109.47117 * 90.00174 * 19 17 15 21 21 H 1.48500 * 109.46914 * 210.00454 * 19 17 15 22 22 H 1.48500 * 109.46876 * 329.99847 * 19 17 15 23 23 C 1.39412 * 119.63543 * 359.97438 * 11 10 9 24 24 C 1.38742 * 119.93940 * 359.97438 * 23 11 10 25 25 S 1.75806 * 124.82515 * 180.02562 * 6 5 2 26 26 H 1.09003 * 109.46956 * 308.37498 * 1 2 3 27 27 H 1.08999 * 109.47350 * 68.37340 * 1 2 3 28 28 H 1.09001 * 109.47377 * 188.38068 * 1 2 3 29 29 H 0.96996 * 119.99739 * 245.00065 * 5 2 1 30 30 H 1.08000 * 119.61461 * 0.02562 * 9 8 7 31 31 H 1.08001 * 119.71203 * 180.02562 * 10 9 8 32 32 H 0.96998 * 120.00333 * 359.97438 * 14 12 11 33 33 H 0.96996 * 120.00502 * 180.02562 * 18 17 15 34 34 H 1.08000 * 120.02857 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.9108 -1.8887 1.8293 7 7 1.2949 -2.7222 1.0596 8 6 1.0555 -3.9578 1.5317 9 6 0.4051 -5.0367 0.8884 10 6 0.2472 -6.2276 1.5191 11 6 0.7257 -6.4126 2.8243 12 6 0.5490 -7.7095 3.5012 13 8 0.9658 -7.8665 4.6332 14 7 -0.0744 -8.7217 2.8662 15 6 -0.2390 -9.9264 3.4953 16 1 0.1310 -10.0658 4.5003 17 6 -0.8816 -10.9706 2.8402 18 7 -1.0401 -12.1267 3.4441 19 14 -1.5210 -10.7298 1.1015 20 1 -0.4621 -11.1007 0.1289 21 1 -2.7122 -11.5906 0.8886 22 1 -1.8972 -9.3067 0.9052 23 6 1.3695 -5.3629 3.4778 24 6 1.5336 -4.1441 2.8354 25 16 2.2869 -2.6441 3.3717 26 1 -0.3633 0.6380 0.8057 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3634 -1.0167 0.1498 29 1 2.6921 -0.0237 2.1255 30 1 0.0298 -4.9111 -0.1165 31 1 -0.2517 -7.0401 1.0117 32 1 -0.4071 -8.5965 1.9637 33 1 -1.4881 -12.8554 2.9869 34 1 1.7401 -5.4982 4.4831 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013683051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = -34.252712 kcal Electronic energy + Delta-G solvation = -23791.453042 eV Core-core repulsion = 19943.752927 eV Total energy + Delta-G solvation = -3847.700115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.034 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.50385 -38.83664 -37.61194 -37.13526 -36.41930 -34.74676 -34.28504 -32.02388 -31.03502 -29.93587 -29.43769 -25.59728 -24.64288 -22.79432 -22.41738 -20.28824 -19.66965 -19.20792 -18.96059 -18.00389 -17.34731 -16.80505 -16.35700 -15.83358 -15.76084 -15.28586 -15.19054 -14.54950 -14.07590 -13.92524 -13.83077 -13.69208 -13.56220 -13.16113 -12.96441 -12.76094 -12.68051 -12.51460 -12.47027 -12.39810 -12.17462 -11.50549 -11.39135 -10.93287 -10.79176 -10.75243 -10.27506 -10.19700 -10.01078 -9.80413 -8.79383 -8.45215 -8.38928 -8.13376 -6.59827 -4.00067 -0.41510 0.16162 0.77845 1.20200 1.38534 1.91270 2.02526 2.88057 2.93668 3.01800 3.24269 3.35932 3.39892 3.76187 3.88259 4.18740 4.33320 4.35762 4.55449 4.62194 4.89354 5.09072 5.19305 5.27439 5.30340 5.34683 5.62484 5.78212 5.90091 6.12429 6.25495 6.43614 6.62034 7.28269 7.32127 7.90448 8.33207 8.68609 9.14339 9.60977 10.50994 Molecular weight = 341.03amu Principal moments of inertia in cm(-1) A = 0.024462 B = 0.002606 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.376194 B =10742.667600 C =11679.524579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.605 3.395 3 O -0.949 6.949 4 O -0.920 6.920 5 N -1.004 6.004 6 C 0.336 3.664 7 N -0.508 5.508 8 C 0.107 3.893 9 C -0.069 4.069 10 C -0.090 4.090 11 C -0.077 4.077 12 C 0.470 3.530 13 O -0.579 6.579 14 N -0.562 5.562 15 C -0.294 4.294 16 H 0.127 0.873 17 C 0.043 3.957 18 N -0.857 5.857 19 Si 0.879 3.121 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.266 1.266 23 C -0.026 4.026 24 C -0.174 4.174 25 S 0.089 5.911 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.439 0.561 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.373 0.627 33 H 0.280 0.720 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 23.856 -7.017 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.697 3.303 3 O -0.940 6.940 4 O -0.910 6.910 5 N -0.755 5.755 6 C -0.041 4.041 7 N -0.230 5.230 8 C -0.013 4.013 9 C -0.090 4.090 10 C -0.111 4.111 11 C -0.085 4.085 12 C 0.259 3.741 13 O -0.464 6.464 14 N -0.198 5.198 15 C -0.423 4.423 16 H 0.144 0.856 17 C -0.163 4.163 18 N -0.495 5.495 19 Si 0.704 3.296 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.191 1.191 23 C -0.051 4.051 24 C -0.293 4.293 25 S 0.337 5.663 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.277 0.723 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.207 0.793 33 H 0.090 0.910 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.513 24.271 -6.703 25.305 hybrid contribution -1.366 -0.452 -1.195 1.871 sum 1.147 23.819 -7.898 25.121 Atomic orbital electron populations 1.30361 1.26066 1.12932 1.11712 1.05381 0.78412 0.73723 0.72734 1.93660 1.78560 1.36998 1.84749 1.93683 1.76901 1.60668 1.59720 1.53102 1.69344 1.15078 1.37963 1.23021 0.97821 0.89174 0.94072 1.66017 1.20499 1.03321 1.33189 1.18573 1.01776 0.89963 0.90942 1.20214 0.98619 0.90094 1.00118 1.20905 0.98832 0.97137 0.94242 1.20246 0.98815 0.95269 0.94137 1.17295 0.85936 0.83484 0.87336 1.90672 1.54505 1.82606 1.18650 1.42249 1.50041 1.12055 1.15429 1.19612 1.34464 0.85779 1.02427 0.85586 1.25170 0.97129 0.95093 0.98903 1.69603 1.39644 1.02499 1.37730 0.86666 0.80037 0.78924 0.83982 1.18962 1.19578 1.19083 1.20311 0.96422 0.88298 1.00032 1.23262 1.08247 0.99067 0.98734 1.84932 1.62080 1.04993 1.14263 0.85259 0.84751 0.84005 0.72256 0.84419 0.84785 0.79265 0.90952 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.52 10.75 101.05 1.09 -2.43 16 2 S 2.61 21.27 5.81 -107.50 -0.62 20.65 16 3 O -0.95 -9.46 18.08 -57.54 -1.04 -10.50 16 4 O -0.92 -11.59 17.20 -57.54 -0.99 -12.58 16 5 N -1.00 -7.55 5.72 30.46 0.17 -7.37 16 6 C 0.34 3.60 7.94 -88.94 -0.71 2.89 16 7 N -0.51 -6.54 8.53 -11.09 -0.09 -6.64 16 8 C 0.11 1.52 6.94 -84.81 -0.59 0.93 16 9 C -0.07 -0.92 10.03 -39.27 -0.39 -1.32 16 10 C -0.09 -1.32 9.44 -39.74 -0.38 -1.70 16 11 C -0.08 -1.36 5.87 -105.00 -0.62 -1.98 16 12 C 0.47 10.59 7.71 -12.55 -0.10 10.49 16 13 O -0.58 -15.23 15.91 5.24 0.08 -15.15 16 14 N -0.56 -12.82 5.03 -11.98 -0.06 -12.88 16 15 C -0.29 -7.85 10.16 -15.00 -0.15 -8.00 16 16 H 0.13 3.84 7.38 -52.49 -0.39 3.45 16 17 C 0.04 1.11 5.50 -17.45 -0.10 1.01 16 18 N -0.86 -23.39 13.96 55.50 0.77 -22.62 16 19 Si 0.88 17.89 27.74 -169.99 -4.71 13.18 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -4.84 6.52 56.52 0.37 -4.47 16 23 C -0.03 -0.42 9.61 -38.96 -0.37 -0.80 16 24 C -0.17 -2.48 6.50 -38.69 -0.25 -2.73 16 25 S 0.09 0.96 23.39 -107.50 -2.51 -1.56 16 26 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.14 0.93 7.30 -51.92 -0.38 0.55 16 29 H 0.44 1.89 8.91 -34.47 -0.31 1.58 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.77 6.38 -52.49 -0.34 1.44 16 32 H 0.37 7.35 3.78 -40.82 -0.15 7.20 16 33 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.14 2.35 7.64 -52.49 -0.40 1.95 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -35.65 326.61 -9.05 -44.70 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -2.40 Total: 9.48 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.57 Total: -3.63 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.79 Total: -49.51 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.95 Total: -38.23 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -4.71 Total: 13.18 kcal Atomic # 16 Polarization: 22.23 SS G_CDS: -3.14 Total: 19.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.65 -9.05 -44.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013683051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.444 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds